RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 DEFB105AQ8NG35 78 aa12.4□□□□□ -0.42
VIM-203ENST00000469543 C9orf153Q5TBE3 101 aa12.4□□□□□ -0.42
VIM-203ENST00000469543 UBL5Q9BZL1 73 aa12.4□□□□□ -0.42
VIM-203ENST00000469543 LOC110117498A0A087WWA1 95 aa12.39□□□□□ -0.43
VIM-203ENST00000469543 NKAPP1Q8N9T2 125 aa12.39□□□□□ -0.43
VIM-203ENST00000469543 HAMPP81172 84 aa12.38□□□□□ -0.43
VIM-203ENST00000469543 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.38□□□□□ -0.43
VIM-203ENST00000469543 KRTAP7-1Q8IUC3 87 aa12.38□□□□□ -0.43
VIM-203ENST00000469543 UQCRQO14949 82 aa12.36□□□□□ -0.43
VIM-203ENST00000469543 SCXQ7RTU7 201 aa12.36□□□□□ -0.43
VIM-203ENST00000469543 COX7CP15954 63 aa12.35□□□□□ -0.43
VIM-203ENST00000469543 Q6ZVQ6 151 aa12.35□□□□□ -0.43
VIM-203ENST00000469543 ATOX1O00244 68 aa12.34□□□□□ -0.43
VIM-203ENST00000469543 SMIM20Q8N5G0 67 aa12.34□□□□□ -0.43
VIM-203ENST00000469543 LINC01547P58512 204 aaPredicted RBP12.34□□□□□ -0.43
VIM-203ENST00000469543 KRTAP1-5Q9BYS1 174 aa12.34□□□□□ -0.43
VIM-203ENST00000469543 TRBV7-4A0A0J9YYF1 115 aa12.33□□□□□ -0.44
VIM-203ENST00000469543 UPK3BQ9BT76 320 aa12.33□□□□□ -0.44
VIM-203ENST00000469543 KCNQ1DNQ9H478 68 aa12.33□□□□□ -0.44
VIM-203ENST00000469543 TRBV7-6A0A0J9YX20 115 aa12.32□□□□□ -0.44
VIM-203ENST00000469543 FAM19A5Q7Z5A7 132 aaPredicted RBP12.32□□□□□ -0.44
VIM-203ENST00000469543 Q9BRP9 147 aa12.29□□□□□ -0.44
VIM-203ENST00000469543 Q8N377 158 aa12.28□□□□□ -0.44
VIM-203ENST00000469543 ST20-AS1Q8NBB2 130 aa12.28□□□□□ -0.44
VIM-203ENST00000469543 GHRHP01286 108 aa12.26□□□□□ -0.45
VIM-203ENST00000469543 SERP2Q8N6R1 65 aa12.26□□□□□ -0.45
VIM-203ENST00000469543 IGLV1-50A0A075B6I6 118 aa12.26□□□□□ -0.45
VIM-203ENST00000469543 TLX1NBP0CAT3 122 aa12.26□□□□□ -0.45
VIM-203ENST00000469543 C3orf84H3BNL1 204 aa12.24□□□□□ -0.45
VIM-203ENST00000469543 ATP5EP2Q5VTU8 51 aa12.24□□□□□ -0.45
VIM-203ENST00000469543 Q8N9L7 120 aa12.24□□□□□ -0.45
VIM-203ENST00000469543 F8WDY8 70 aa12.24□□□□□ -0.45
VIM-203ENST00000469543 ERC2-IT1O76042 136 aa12.24□□□□□ -0.45
VIM-203ENST00000469543 IGKV2-24A0A0C4DH68 120 aa12.24□□□□□ -0.45
VIM-203ENST00000469543 KRTAP4-16G5E9R7 235 aaPredicted RBP12.24□□□□□ -0.45
VIM-203ENST00000469543 PDE6GP18545 87 aa12.23□□□□□ -0.45
VIM-203ENST00000469543 Q6ZRX8 168 aa12.23□□□□□ -0.45
VIM-203ENST00000469543 MDFIQ99750 246 aa12.23□□□□□ -0.45
VIM-203ENST00000469543 CRYGAP11844 174 aa12.22□□□□□ -0.45
VIM-203ENST00000469543 PLECQ15149 4684 aaKnown RBP12.21□□□□□ -0.45
VIM-203ENST00000469543 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.21□□□□□ -0.45
VIM-203ENST00000469543 MRPL55Q7Z7F7 128 aaKnown RBP12.21□□□□□ -0.46
VIM-203ENST00000469543 H3BQ85 93 aa12.2□□□□□ -0.46
VIM-203ENST00000469543 ETDCA0A1B0GVM5 59 aa12.19□□□□□ -0.46
VIM-203ENST00000469543 A0A0G2JQZ4 141 aa12.18□□□□□ -0.46
VIM-203ENST00000469543 A0A1W2PNN7 141 aa12.18□□□□□ -0.46
VIM-203ENST00000469543 RMI2Q96E14 147 aa12.18□□□□□ -0.46
VIM-203ENST00000469543 A0A096LNI7 61 aa12.17□□□□□ -0.46
VIM-203ENST00000469543 PLA2G2DQ9UNK4 145 aa12.17□□□□□ -0.46
VIM-203ENST00000469543 PSCAO43653 123 aa12.15□□□□□ -0.46
VIM-203ENST00000469543 SPRR1AP35321 89 aa12.15□□□□□ -0.46
VIM-203ENST00000469543 LOC107984640A0A0U1RRK4 108 aa12.15□□□□□ -0.46
VIM-203ENST00000469543 UBE2BP63146 152 aa12.15□□□□□ -0.46
VIM-203ENST00000469543 CHTF8P0CG12 524 aa12.14□□□□□ -0.47
VIM-203ENST00000469543 UBE2DNLQ8IWF7 75 aa12.14□□□□□ -0.47
VIM-203ENST00000469543 CXCL6P80162 114 aa12.13□□□□□ -0.47
VIM-203ENST00000469543 C20orf197Q8N268 126 aa12.13□□□□□ -0.47
VIM-203ENST00000469543 IGLV5-37A0A075B6J1 123 aa12.13□□□□□ -0.47
VIM-203ENST00000469543 PRYO14603 147 aa12.12□□□□□ -0.47
VIM-203ENST00000469543 DHRS4-AS1Q9P1J3 65 aa12.12□□□□□ -0.47
VIM-203ENST00000469543 PRLHP81277 87 aa12.12□□□□□ -0.47
VIM-203ENST00000469543 IGLV5-48A0A075B6I7 105 aa12.11□□□□□ -0.47
VIM-203ENST00000469543 BPY2O14599 106 aa12.11□□□□□ -0.47
VIM-203ENST00000469543 APLNQ9ULZ1 77 aa12.11□□□□□ -0.47
VIM-203ENST00000469543 PRKDCP78527 4128 aaKnown RBP12.11□□□□□ -0.47
VIM-203ENST00000469543 A0A1W2PNM2 257 aa12.1□□□□□ -0.47
VIM-203ENST00000469543 NREPQ16612 68 aa12.1□□□□□ -0.47
VIM-203ENST00000469543 REG3GQ6UW15 175 aa12.09□□□□□ -0.47
VIM-203ENST00000469543 KRTAP11-1Q8IUC1 163 aa12.09□□□□□ -0.47
VIM-203ENST00000469543 STARD9Q9P2P6 4700 aa12.08□□□□□ -0.48
VIM-203ENST00000469543 C1orf137Q5JT78 98 aa12.07□□□□□ -0.48
VIM-203ENST00000469543 MEGF8Q7Z7M0 2845 aa12.06□□□□□ -0.48
VIM-203ENST00000469543 SNURFQ9Y675 71 aa12.05□□□□□ -0.48
VIM-203ENST00000469543 TGP01266 2768 aa12.05□□□□□ -0.48
VIM-203ENST00000469543 C16orf90A8MZG2 172 aa12.04□□□□□ -0.48
VIM-203ENST00000469543 TNP2Q05952 138 aa12.04□□□□□ -0.48
VIM-203ENST00000469543 FUSP35637 526 aaKnown RBP eCLIP12.04□□□□□ -0.48
VIM-203ENST00000469543 HIGD2AQ9BW72 106 aa12.04□□□□□ -0.48
VIM-203ENST00000469543 PHF5AQ7RTV0 110 aaKnown RBP12.03□□□□□ -0.48
VIM-203ENST00000469543 SMIM29Q86T20 159 aa12.03□□□□□ -0.48
VIM-203ENST00000469543 IGKV4-1P06312 121 aa12.02□□□□□ -0.49
VIM-203ENST00000469543 KMT2AQ03164 3969 aa12.01□□□□□ -0.49
VIM-203ENST00000469543 CNBPP62633 177 aaKnown RBP12.01□□□□□ -0.49
VIM-203ENST00000469543 DYNC2H1Q8NCM8 4307 aaKnown RBP12□□□□□ -0.49
VIM-203ENST00000469543 TRAV7A0A075B6U4 112 aa12□□□□□ -0.49
VIM-203ENST00000469543 PANO1I0J062 215 aa11.99□□□□□ -0.49
VIM-203ENST00000469543 DEFB116Q30KQ4 102 aa11.97□□□□□ -0.49
VIM-203ENST00000469543 B9D2Q9BPU9 175 aa11.97□□□□□ -0.49
VIM-203ENST00000469543 DPH3Q96FX2 82 aa11.96□□□□□ -0.49
VIM-203ENST00000469543 Q8NBF4 154 aa11.96□□□□□ -0.5
VIM-203ENST00000469543 LINC00476Q8WZB0 136 aa11.96□□□□□ -0.5
VIM-203ENST00000469543 DNHD1Q96M86 4753 aa11.96□□□□□ -0.5
VIM-203ENST00000469543 TMEM258P61165 79 aa11.95□□□□□ -0.5
VIM-203ENST00000469543 LRCOL1A6NCL2 159 aa11.94□□□□□ -0.5
VIM-203ENST00000469543 OXTP01178 125 aa11.94□□□□□ -0.5
VIM-203ENST00000469543 NBDYA0A0U1RRE5 68 aa11.92□□□□□ -0.5
VIM-203ENST00000469543 H7BZZ5 65 aa11.92□□□□□ -0.5
VIM-203ENST00000469543 IGFL1Q6UW32 110 aa11.92□□□□□ -0.5
VIM-203ENST00000469543 EPM2AB3EWF7 344 aa11.9□□□□□ -0.5
VIM-203ENST00000469543 SPRR4Q96PI1 79 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms