RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 FAM19A1Q7Z5A9 133 aa5.82□□□□□ -1.48
SYNE1-217ENST00000466159 FAM19A5Q7Z5A7 132 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-217ENST00000466159 NKAPP1Q8N9T2 125 aa5.82□□□□□ -1.48
SYNE1-217ENST00000466159 C7orf33Q8WU49 177 aa5.82□□□□□ -1.48
SYNE1-217ENST00000466159 RPS28P62857 69 aaKnown RBP5.81□□□□□ -1.48
SYNE1-217ENST00000466159 FAM168BA1KXE4 195 aa5.81□□□□□ -1.48
SYNE1-217ENST00000466159 ATP5EP2Q5VTU8 51 aa5.81□□□□□ -1.48
SYNE1-217ENST00000466159 LYSTQ99698 3801 aa5.81□□□□□ -1.48
SYNE1-217ENST00000466159 TRBV7-4A0A0J9YYF1 115 aa5.8□□□□□ -1.48
SYNE1-217ENST00000466159 KCNQ1DNQ9H478 68 aa5.8□□□□□ -1.48
SYNE1-217ENST00000466159 MGAM2Q2M2H8 2515 aa5.8□□□□□ -1.48
SYNE1-217ENST00000466159 RPL37AP8A6NKH3 93 aa5.8□□□□□ -1.48
SYNE1-217ENST00000466159 TLX1NBP0CAT3 122 aa5.8□□□□□ -1.48
SYNE1-217ENST00000466159 PDE6GP18545 87 aa5.8□□□□□ -1.48
SYNE1-217ENST00000466159 Q6ZVQ6 151 aa5.8□□□□□ -1.48
SYNE1-217ENST00000466159 CYSTM1Q9H1C7 97 aa5.8□□□□□ -1.48
SYNE1-217ENST00000466159 GHRHP01286 108 aa5.79□□□□□ -1.48
SYNE1-217ENST00000466159 HAMPP81172 84 aa5.79□□□□□ -1.48
SYNE1-217ENST00000466159 DNAH10Q8IVF4 4471 aa5.79□□□□□ -1.48
SYNE1-217ENST00000466159 LINC01547P58512 204 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-217ENST00000466159 KRTAP7-1Q8IUC3 87 aa5.78□□□□□ -1.48
SYNE1-217ENST00000466159 UPK3BQ9BT76 320 aa5.78□□□□□ -1.48
SYNE1-217ENST00000466159 COL7A1Q02388 2944 aa5.78□□□□□ -1.48
SYNE1-217ENST00000466159 SERP2Q8N6R1 65 aa5.78□□□□□ -1.48
SYNE1-217ENST00000466159 DEFB105AQ8NG35 78 aa5.78□□□□□ -1.48
SYNE1-217ENST00000466159 RMI2Q96E14 147 aa5.77□□□□□ -1.49
SYNE1-217ENST00000466159 PLA2G2DQ9UNK4 145 aa5.77□□□□□ -1.49
SYNE1-217ENST00000466159 TMEM258P61165 79 aa5.77□□□□□ -1.49
SYNE1-217ENST00000466159 DNAH9Q9NYC9 4486 aa5.76□□□□□ -1.49
SYNE1-217ENST00000466159 IGLV1-50A0A075B6I6 118 aa5.76□□□□□ -1.49
SYNE1-217ENST00000466159 DPH3Q96FX2 82 aa5.76□□□□□ -1.49
SYNE1-217ENST00000466159 Q8N377 158 aa5.76□□□□□ -1.49
SYNE1-217ENST00000466159 STAB2Q8WWQ8 2551 aa5.76□□□□□ -1.49
SYNE1-217ENST00000466159 KRTAP4-16G5E9R7 235 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-217ENST00000466159 OXTP01178 125 aa5.75□□□□□ -1.49
SYNE1-217ENST00000466159 Q6ZRX8 168 aa5.75□□□□□ -1.49
SYNE1-217ENST00000466159 SCXQ7RTU7 201 aa5.75□□□□□ -1.49
SYNE1-217ENST00000466159 Q9BRP9 147 aa5.75□□□□□ -1.49
SYNE1-217ENST00000466159 KRTAP1-5Q9BYS1 174 aa5.75□□□□□ -1.49
SYNE1-217ENST00000466159 IGLV5-37A0A075B6J1 123 aa5.75□□□□□ -1.49
SYNE1-217ENST00000466159 SPRR1AP35321 89 aa5.74□□□□□ -1.49
SYNE1-217ENST00000466159 ETDCA0A1B0GVM5 59 aa5.73□□□□□ -1.49
SYNE1-217ENST00000466159 PRYO14603 147 aa5.73□□□□□ -1.49
SYNE1-217ENST00000466159 CXCL6P80162 114 aa5.73□□□□□ -1.49
SYNE1-217ENST00000466159 MRPL55Q7Z7F7 128 aaKnown RBP5.73□□□□□ -1.49
SYNE1-217ENST00000466159 ST20-AS1Q8NBB2 130 aa5.73□□□□□ -1.49
SYNE1-217ENST00000466159 DHRS4-AS1Q9P1J3 65 aa5.73□□□□□ -1.49
SYNE1-217ENST00000466159 ERC2-IT1O76042 136 aa5.71□□□□□ -1.5
SYNE1-217ENST00000466159 IGLV5-48A0A075B6I7 105 aa5.71□□□□□ -1.5
SYNE1-217ENST00000466159 C3orf84H3BNL1 204 aa5.71□□□□□ -1.5
SYNE1-217ENST00000466159 DNAH7Q8WXX0 4024 aa5.71□□□□□ -1.5
SYNE1-217ENST00000466159 Q5XG85 94 aa5.7□□□□□ -1.5
SYNE1-217ENST00000466159 IGKV2-24A0A0C4DH68 120 aa5.7□□□□□ -1.5
SYNE1-217ENST00000466159 TENM2Q9NT68 2774 aa5.7□□□□□ -1.5
SYNE1-217ENST00000466159 CSMD3Q7Z407 3707 aa5.7□□□□□ -1.5
SYNE1-217ENST00000466159 A0A096LNI7 61 aa5.69□□□□□ -1.5
SYNE1-217ENST00000466159 PSCAO43653 123 aa5.69□□□□□ -1.5
SYNE1-217ENST00000466159 UBE2BP63146 152 aa5.69□□□□□ -1.5
SYNE1-217ENST00000466159 UBE2DNLQ8IWF7 75 aa5.69□□□□□ -1.5
SYNE1-217ENST00000466159 APLNQ9ULZ1 77 aa5.69□□□□□ -1.5
SYNE1-217ENST00000466159 C4orf26Q17RF5 130 aa5.69□□□□□ -1.5
SYNE1-217ENST00000466159 REG3GQ6UW15 175 aa5.69□□□□□ -1.5
SYNE1-217ENST00000466159 Q8N9L7 120 aa5.69□□□□□ -1.5
SYNE1-217ENST00000466159 NREPQ16612 68 aa5.68□□□□□ -1.5
SYNE1-217ENST00000466159 MDFIQ99750 246 aa5.68□□□□□ -1.5
SYNE1-217ENST00000466159 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-217ENST00000466159 A0A1W2PNN7 141 aa5.68□□□□□ -1.5
SYNE1-217ENST00000466159 A0A1W2PNM2 257 aa5.67□□□□□ -1.5
SYNE1-217ENST00000466159 C16orf90A8MZG2 172 aa5.67□□□□□ -1.5
SYNE1-217ENST00000466159 TNP2Q05952 138 aa5.67□□□□□ -1.5
SYNE1-217ENST00000466159 C20orf197Q8N268 126 aa5.67□□□□□ -1.5
SYNE1-217ENST00000466159 DYNC2H1Q8NCM8 4307 aaKnown RBP5.67□□□□□ -1.5
SYNE1-217ENST00000466159 CNBPP62633 177 aaKnown RBP5.67□□□□□ -1.5
SYNE1-217ENST00000466159 C1orf137Q5JT78 98 aa5.67□□□□□ -1.5
SYNE1-217ENST00000466159 HRCT1Q6UXD1 115 aa5.67□□□□□ -1.5
SYNE1-217ENST00000466159 PLECQ15149 4684 aaKnown RBP5.67□□□□□ -1.5
SYNE1-217ENST00000466159 TRAV7A0A075B6U4 112 aa5.66□□□□□ -1.5
SYNE1-217ENST00000466159 BCE1O60756 84 aa5.66□□□□□ -1.5
SYNE1-217ENST00000466159 FUSP35637 526 aaKnown RBP eCLIP5.65□□□□□ -1.5
SYNE1-217ENST00000466159 BPY2O14599 106 aa5.65□□□□□ -1.51
SYNE1-217ENST00000466159 IGKV4-1P06312 121 aa5.65□□□□□ -1.51
SYNE1-217ENST00000466159 PRLHP81277 87 aa5.65□□□□□ -1.51
SYNE1-217ENST00000466159 CHTF8P0CG12 524 aa5.64□□□□□ -1.51
SYNE1-217ENST00000466159 B9D2Q9BPU9 175 aa5.64□□□□□ -1.51
SYNE1-217ENST00000466159 SMIM29Q86T20 159 aa5.64□□□□□ -1.51
SYNE1-217ENST00000466159 A0A0G2JQZ4 141 aa5.63□□□□□ -1.51
SYNE1-217ENST00000466159 EPM2AB3EWF7 344 aa5.63□□□□□ -1.51
SYNE1-217ENST00000466159 Q8NBF4 154 aa5.63□□□□□ -1.51
SYNE1-217ENST00000466159 KRTAP11-1Q8IUC1 163 aa5.63□□□□□ -1.51
SYNE1-217ENST00000466159 FAM236DA0A1B0GTK5 79 aa5.62□□□□□ -1.51
SYNE1-217ENST00000466159 FAM236CP0DP71 79 aa5.62□□□□□ -1.51
SYNE1-217ENST00000466159 PHF5AQ7RTV0 110 aaKnown RBP5.62□□□□□ -1.51
SYNE1-217ENST00000466159 HIGD2AQ9BW72 106 aa5.62□□□□□ -1.51
SYNE1-217ENST00000466159 SNURFQ9Y675 71 aa5.62□□□□□ -1.51
SYNE1-217ENST00000466159 SPRR4Q96PI1 79 aa5.61□□□□□ -1.51
SYNE1-217ENST00000466159 SRRM2Q9UQ35 2752 aaKnown RBP5.61□□□□□ -1.51
SYNE1-217ENST00000466159 A0A1B0GW54 56 aa5.61□□□□□ -1.51
SYNE1-217ENST00000466159 C14orf177Q52M58 125 aa5.61□□□□□ -1.51
SYNE1-217ENST00000466159 LINC00476Q8WZB0 136 aa5.61□□□□□ -1.51
SYNE1-217ENST00000466159 LRCOL1A6NCL2 159 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms