RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 LOC100131303A0A0U1RQF7 123 aa5.32□□□□□ -1.56
USP54-210ENST00000466048 Q8NAQ8 132 aa5.32□□□□□ -1.56
USP54-210ENST00000466048 TM2D3Q9BRN9 247 aa5.32□□□□□ -1.56
USP54-210ENST00000466048 LYPD5Q6UWN5 251 aa5.32□□□□□ -1.56
USP54-210ENST00000466048 IGLV5-45A0A087WSX0 123 aa5.32□□□□□ -1.56
USP54-210ENST00000466048 H3BPC8 53 aa5.32□□□□□ -1.56
USP54-210ENST00000466048 STAB1Q9NY15 2570 aa5.31□□□□□ -1.56
USP54-210ENST00000466048 LINC01556Q5JQF7 62 aa5.31□□□□□ -1.56
USP54-210ENST00000466048 HIGD2AQ9BW72 106 aa5.31□□□□□ -1.56
USP54-210ENST00000466048 IGLV5-39A0A0G2JS06 123 aa5.31□□□□□ -1.56
USP54-210ENST00000466048 LINC00575Q6W349 94 aa5.31□□□□□ -1.56
USP54-210ENST00000466048 LRCOL1A6NCL2 159 aa5.3□□□□□ -1.56
USP54-210ENST00000466048 XAGE1AQ9HD64 81 aa5.3□□□□□ -1.56
USP54-210ENST00000466048 ZANQ9Y493 2812 aa5.3□□□□□ -1.56
USP54-210ENST00000466048 ASH1LQ9NR48 2969 aaKnown RBP5.29□□□□□ -1.56
USP54-210ENST00000466048 KRTAP10-11P60412 298 aa5.29□□□□□ -1.56
USP54-210ENST00000466048 HCG22E2RYF7 251 aa5.29□□□□□ -1.56
USP54-210ENST00000466048 C1orf137Q5JT78 98 aa5.29□□□□□ -1.56
USP54-210ENST00000466048 CYP4F30PQ9H0H9 118 aa5.29□□□□□ -1.56
USP54-210ENST00000466048 C4orf48Q5BLP8 95 aa5.29□□□□□ -1.56
USP54-210ENST00000466048 LOC110117498A0A087WWA1 95 aa5.28□□□□□ -1.56
USP54-210ENST00000466048 SERTAD4-AS1Q5TG53 156 aa5.28□□□□□ -1.56
USP54-210ENST00000466048 C6orf223Q8N319 242 aa5.28□□□□□ -1.56
USP54-210ENST00000466048 LINC00337Q8N6G1 96 aa5.28□□□□□ -1.56
USP54-210ENST00000466048 ANK3Q12955 4377 aaKnown RBP5.28□□□□□ -1.56
USP54-210ENST00000466048 KLKP1Q107X0 134 aa5.28□□□□□ -1.56
USP54-210ENST00000466048 C2orf48Q96LS8 159 aa5.28□□□□□ -1.56
USP54-210ENST00000466048 Q9UF83 564 aa5.28□□□□□ -1.56
USP54-210ENST00000466048 MXRA5Q9NR99 2828 aa5.27□□□□□ -1.57
USP54-210ENST00000466048 COL6A5A8TX70 2615 aa5.27□□□□□ -1.57
USP54-210ENST00000466048 MAP1AP78559 2803 aaPredicted RBP5.27□□□□□ -1.57
USP54-210ENST00000466048 IGLV5-52A0A0A0MRZ9 124 aa5.27□□□□□ -1.57
USP54-210ENST00000466048 H0Y9P7 68 aa5.26□□□□□ -1.57
USP54-210ENST00000466048 ZNF706Q9Y5V0 76 aaPredicted RBP5.26□□□□□ -1.57
USP54-210ENST00000466048 COX6A2Q02221 97 aa5.26□□□□□ -1.57
USP54-210ENST00000466048 C10orf25Q5T742 122 aa5.26□□□□□ -1.57
USP54-210ENST00000466048 FAM104AQ969W3 186 aa5.26□□□□□ -1.57
USP54-210ENST00000466048 ITPR2Q14571 2701 aa5.26□□□□□ -1.57
USP54-210ENST00000466048 NBDYA0A0U1RRE5 68 aa5.25□□□□□ -1.57
USP54-210ENST00000466048 CYSRT1A8MQ03 144 aa5.25□□□□□ -1.57
USP54-210ENST00000466048 LINC00336Q6ZUF6 198 aa5.24□□□□□ -1.57
USP54-210ENST00000466048 LINC01600Q96MT4 127 aa5.24□□□□□ -1.57
USP54-210ENST00000466048 Q6ZQT0 140 aa5.23□□□□□ -1.57
USP54-210ENST00000466048 TP53AIP1Q9HCN2 124 aa5.22□□□□□ -1.57
USP54-210ENST00000466048 C8orf87E5RJ46 101 aa5.22□□□□□ -1.57
USP54-210ENST00000466048 CELSR1Q9NYQ6 3014 aa5.22□□□□□ -1.57
USP54-210ENST00000466048 DNAH10OSP0CZ25 163 aa5.22□□□□□ -1.57
USP54-210ENST00000466048 IGLV4-60A0A075B6I1 120 aa5.21□□□□□ -1.57
USP54-210ENST00000466048 ELOF1P60002 83 aaKnown RBP5.21□□□□□ -1.58
USP54-210ENST00000466048 ATP11AUNQ6ZP68 121 aa5.21□□□□□ -1.58
USP54-210ENST00000466048 IGKV2-28A0A075B6P5 120 aa5.21□□□□□ -1.58
USP54-210ENST00000466048 IGKV2D-28P01615 120 aa5.21□□□□□ -1.58
USP54-210ENST00000466048 SPAG11AQ6PDA7 123 aa5.21□□□□□ -1.58
USP54-210ENST00000466048 UNQ6190/PRO20217Q6UXQ8 127 aa5.21□□□□□ -1.58
USP54-210ENST00000466048 C1orf64Q8NEQ6 169 aa5.21□□□□□ -1.58
USP54-210ENST00000466048 VPS13CQ709C8 3753 aa5.2□□□□□ -1.58
USP54-210ENST00000466048 IGHV3OR16-9A0A0B4J2B5 98 aa5.2□□□□□ -1.58
USP54-210ENST00000466048 SMCR5Q8TEV8 140 aa5.2□□□□□ -1.58
USP54-210ENST00000466048 FAM218AQ96MZ4 157 aa5.2□□□□□ -1.58
USP54-210ENST00000466048 LITAFQ99732 161 aa5.2□□□□□ -1.58
USP54-210ENST00000466048 KTN1-AS1Q86SY8 53 aa5.2□□□□□ -1.58
USP54-210ENST00000466048 SMIM29Q86T20 159 aa5.2□□□□□ -1.58
USP54-210ENST00000466048 AKAP9Q99996 3911 aa5.19□□□□□ -1.58
USP54-210ENST00000466048 LINC00588Q9Y4M8 146 aa5.19□□□□□ -1.58
USP54-210ENST00000466048 NSD1Q96L73 2696 aaPredicted RBP5.19□□□□□ -1.58
USP54-210ENST00000466048 H7BZZ5 65 aa5.18□□□□□ -1.58
USP54-210ENST00000466048 RPL37AP8A6NKH3 93 aa5.18□□□□□ -1.58
USP54-210ENST00000466048 CSMD1Q96PZ7 3565 aa5.18□□□□□ -1.58
USP54-210ENST00000466048 RETNLBQ9BQ08 111 aa5.18□□□□□ -1.58
USP54-210ENST00000466048 LCA10Q71F78 164 aa5.17□□□□□ -1.58
USP54-210ENST00000466048 PRR3P79522 188 aaKnown RBP5.17□□□□□ -1.58
USP54-210ENST00000466048 PRR15Q8IV56 129 aa5.17□□□□□ -1.58
USP54-210ENST00000466048 A0A096LNI7 61 aa5.16□□□□□ -1.58
USP54-210ENST00000466048 C16orf90A8MZG2 172 aa5.16□□□□□ -1.58
USP54-210ENST00000466048 C7orf65Q6ZTY9 151 aa5.16□□□□□ -1.58
USP54-210ENST00000466048 CSMD2Q7Z408 3487 aa5.16□□□□□ -1.58
USP54-210ENST00000466048 NBPF19A0A087WUL8 3843 aa5.16□□□□□ -1.58
USP54-210ENST00000466048 PCOTHQ58A44 107 aa5.16□□□□□ -1.58
USP54-210ENST00000466048 A0A087WSZ3 146 aa5.15□□□□□ -1.58
USP54-210ENST00000466048 A0A1B0GU69 56 aa5.15□□□□□ -1.58
USP54-210ENST00000466048 FAM229AH3BQW9 127 aa5.15□□□□□ -1.58
USP54-210ENST00000466048 ACYP2P14621 99 aa5.15□□□□□ -1.58
USP54-210ENST00000466048 SVEP1Q4LDE5 3571 aa5.15□□□□□ -1.58
USP54-210ENST00000466048 REG3GQ6UW15 175 aa5.15□□□□□ -1.59
USP54-210ENST00000466048 HIVEP1P15822 2718 aa5.15□□□□□ -1.59
USP54-210ENST00000466048 C9orf116Q5BN46 136 aaPredicted RBP5.14□□□□□ -1.59
USP54-210ENST00000466048 Q8NBF4 154 aa5.14□□□□□ -1.59
USP54-210ENST00000466048 APLNQ9ULZ1 77 aa5.14□□□□□ -1.59
USP54-210ENST00000466048 PRR34Q9NV39 138 aa5.14□□□□□ -1.59
USP54-210ENST00000466048 A8MUN3 132 aa5.14□□□□□ -1.59
USP54-210ENST00000466048 OTOGQ6ZRI0 2925 aa5.14□□□□□ -1.59
USP54-210ENST00000466048 LOC101927531A0A1B0GV80 90 aa5.13□□□□□ -1.59
USP54-210ENST00000466048 TRAV22A0A0B4J277 110 aa5.12□□□□□ -1.59
USP54-210ENST00000466048 ZNF469Q96JG9 3925 aaPredicted RBP5.12□□□□□ -1.59
USP54-210ENST00000466048 PLA2G1BP04054 148 aaKnown RBP5.11□□□□□ -1.59
USP54-210ENST00000466048 Q9BRP9 147 aa5.11□□□□□ -1.59
USP54-210ENST00000466048 ZFHX3Q15911 3703 aa5.11□□□□□ -1.59
USP54-210ENST00000466048 GVQW2A0A096LPI5 108 aaPredicted RBP5.11□□□□□ -1.59
USP54-210ENST00000466048 LINC00476Q8WZB0 136 aa5.11□□□□□ -1.59
USP54-210ENST00000466048 RTL8CO15255 209 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms