RNA–Protein interactions for RNA: ENST00000465425.1

SYNE4-204, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 2

Gene SYNE4, Length 2,339 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-204ENST00000465425 TMEM258P61165 79 aa11.94□□□□□ -0.5
SYNE4-204ENST00000465425 MAST4O15021 2626 aa11.94□□□□□ -0.5
SYNE4-204ENST00000465425 FLNBO75369 2602 aaKnown RBP11.93□□□□□ -0.5
SYNE4-204ENST00000465425 DEFB105AQ8NG35 78 aa11.92□□□□□ -0.5
SYNE4-204ENST00000465425 PRB2P02812 416 aaPredicted RBP11.91□□□□□ -0.5
SYNE4-204ENST00000465425 RMI2Q96E14 147 aa11.91□□□□□ -0.5
SYNE4-204ENST00000465425 NOTCH1P46531 2555 aa11.91□□□□□ -0.5
SYNE4-204ENST00000465425 PLA2G2DQ9UNK4 145 aa11.91□□□□□ -0.5
SYNE4-204ENST00000465425 BCE1O60756 84 aa11.9□□□□□ -0.5
SYNE4-204ENST00000465425 SCXQ7RTU7 201 aa11.9□□□□□ -0.5
SYNE4-204ENST00000465425 DNAH3Q8TD57 4116 aa11.9□□□□□ -0.5
SYNE4-204ENST00000465425 RPL37AP8A6NKH3 93 aa11.89□□□□□ -0.51
SYNE4-204ENST00000465425 J3KT08 172 aa11.89□□□□□ -0.51
SYNE4-204ENST00000465425 CASC10Q5T4H9 136 aa11.89□□□□□ -0.51
SYNE4-204ENST00000465425 DHRS4-AS1Q9P1J3 65 aa11.88□□□□□ -0.51
SYNE4-204ENST00000465425 C20orf197Q8N268 126 aa11.88□□□□□ -0.51
SYNE4-204ENST00000465425 TRAV7A0A075B6U4 112 aa11.87□□□□□ -0.51
SYNE4-204ENST00000465425 FAM168BA1KXE4 195 aa11.87□□□□□ -0.51
SYNE4-204ENST00000465425 Q6ZRX8 168 aa11.87□□□□□ -0.51
SYNE4-204ENST00000465425 TM2D3Q9BRN9 247 aa11.87□□□□□ -0.51
SYNE4-204ENST00000465425 ETDCA0A1B0GVM5 59 aa11.86□□□□□ -0.51
SYNE4-204ENST00000465425 PRYO14603 147 aa11.86□□□□□ -0.51
SYNE4-204ENST00000465425 Q8N377 158 aa11.86□□□□□ -0.51
SYNE4-204ENST00000465425 IGLV1-50A0A075B6I6 118 aa11.85□□□□□ -0.51
SYNE4-204ENST00000465425 IGLV5-37A0A075B6J1 123 aa11.85□□□□□ -0.51
SYNE4-204ENST00000465425 LOC107984640A0A0U1RRK4 108 aa11.85□□□□□ -0.51
SYNE4-204ENST00000465425 NREPQ16612 68 aa11.85□□□□□ -0.51
SYNE4-204ENST00000465425 RPS28P62857 69 aaKnown RBP11.82□□□□□ -0.52
SYNE4-204ENST00000465425 C3orf84H3BNL1 204 aa11.82□□□□□ -0.52
SYNE4-204ENST00000465425 FAM19A5Q7Z5A7 132 aaPredicted RBP11.82□□□□□ -0.52
SYNE4-204ENST00000465425 Q9BRP9 147 aa11.82□□□□□ -0.52
SYNE4-204ENST00000465425 IGLV5-48A0A075B6I7 105 aa11.81□□□□□ -0.52
SYNE4-204ENST00000465425 KRTAP4-16G5E9R7 235 aaPredicted RBP11.81□□□□□ -0.52
SYNE4-204ENST00000465425 MRPL55Q7Z7F7 128 aaKnown RBP11.81□□□□□ -0.52
SYNE4-204ENST00000465425 DPH3Q96FX2 82 aa11.81□□□□□ -0.52
SYNE4-204ENST00000465425 K7EIL1 84 aa11.8□□□□□ -0.52
SYNE4-204ENST00000465425 SPRR1AP35321 89 aa11.8□□□□□ -0.52
SYNE4-204ENST00000465425 FUSP35637 526 aaKnown RBP eCLIP11.78□□□□□ -0.52
SYNE4-204ENST00000465425 NBEAL1Q6ZS30 2694 aa11.78□□□□□ -0.52
SYNE4-204ENST00000465425 KRTAP7-1Q8IUC3 87 aa11.78□□□□□ -0.52
SYNE4-204ENST00000465425 BAHCC1Q9P281 2608 aa11.78□□□□□ -0.52
SYNE4-204ENST00000465425 COL6A5A8TX70 2615 aa11.77□□□□□ -0.53
SYNE4-204ENST00000465425 BPY2O14599 106 aa11.76□□□□□ -0.53
SYNE4-204ENST00000465425 Q8N9L7 120 aa11.76□□□□□ -0.53
SYNE4-204ENST00000465425 UBE2BP63146 152 aa11.76□□□□□ -0.53
SYNE4-204ENST00000465425 ST20-AS1Q8NBB2 130 aa11.75□□□□□ -0.53
SYNE4-204ENST00000465425 C1orf137Q5JT78 98 aa11.74□□□□□ -0.53
SYNE4-204ENST00000465425 KLKP1Q107X0 134 aa11.74□□□□□ -0.53
SYNE4-204ENST00000465425 A0A1B0GW54 56 aa11.73□□□□□ -0.53
SYNE4-204ENST00000465425 IGKV4-1P06312 121 aa11.73□□□□□ -0.53
SYNE4-204ENST00000465425 REG3GQ6UW15 175 aa11.72□□□□□ -0.53
SYNE4-204ENST00000465425 DNAH1Q9P2D7 4330 aa11.72□□□□□ -0.53
SYNE4-204ENST00000465425 SNURFQ9Y675 71 aa11.72□□□□□ -0.53
SYNE4-204ENST00000465425 H7BZZ5 65 aa11.71□□□□□ -0.54
SYNE4-204ENST00000465425 TNP2Q05952 138 aa11.71□□□□□ -0.54
SYNE4-204ENST00000465425 ERC2-IT1O76042 136 aa11.7□□□□□ -0.54
SYNE4-204ENST00000465425 FAM236DA0A1B0GTK5 79 aa11.7□□□□□ -0.54
SYNE4-204ENST00000465425 A0A1W2PNM2 257 aa11.7□□□□□ -0.54
SYNE4-204ENST00000465425 FAM236CP0DP71 79 aa11.7□□□□□ -0.54
SYNE4-204ENST00000465425 HUWE1Q7Z6Z7 4374 aaKnown RBP11.69□□□□□ -0.54
SYNE4-204ENST00000465425 PSCAO43653 123 aa11.69□□□□□ -0.54
SYNE4-204ENST00000465425 Q8NBF4 154 aa11.68□□□□□ -0.54
SYNE4-204ENST00000465425 IGKV2-24A0A0C4DH68 120 aa11.67□□□□□ -0.54
SYNE4-204ENST00000465425 KRTAP1-5Q9BYS1 174 aa11.66□□□□□ -0.54
SYNE4-204ENST00000465425 A0A096LNI7 61 aa11.65□□□□□ -0.54
SYNE4-204ENST00000465425 C16orf90A8MZG2 172 aa11.65□□□□□ -0.54
SYNE4-204ENST00000465425 UBE2DNLQ8IWF7 75 aa11.65□□□□□ -0.54
SYNE4-204ENST00000465425 F8WEM9 126 aa11.64□□□□□ -0.55
SYNE4-204ENST00000465425 OXTP01178 125 aa11.63□□□□□ -0.55
SYNE4-204ENST00000465425 CNBPP62633 177 aaKnown RBP11.63□□□□□ -0.55
SYNE4-204ENST00000465425 SPRR4Q96PI1 79 aa11.63□□□□□ -0.55
SYNE4-204ENST00000465425 NDUFC1O43677 76 aa11.63□□□□□ -0.55
SYNE4-204ENST00000465425 MGAM2Q2M2H8 2515 aa11.62□□□□□ -0.55
SYNE4-204ENST00000465425 TMEM254Q8TBM7 123 aa11.61□□□□□ -0.55
SYNE4-204ENST00000465425 LYSTQ99698 3801 aa11.61□□□□□ -0.55
SYNE4-204ENST00000465425 PRLHP81277 87 aa11.6□□□□□ -0.55
SYNE4-204ENST00000465425 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.59□□□□□ -0.55
SYNE4-204ENST00000465425 A0A1W2PNN7 141 aa11.59□□□□□ -0.55
SYNE4-204ENST00000465425 SMIM29Q86T20 159 aa11.59□□□□□ -0.55
SYNE4-204ENST00000465425 OCR1Q9BZK8 76 aa11.59□□□□□ -0.55
SYNE4-204ENST00000465425 LINC00476Q8WZB0 136 aa11.59□□□□□ -0.55
SYNE4-204ENST00000465425 C14orf177Q52M58 125 aa11.58□□□□□ -0.56
SYNE4-204ENST00000465425 HIGD2AQ9BW72 106 aa11.57□□□□□ -0.56
SYNE4-204ENST00000465425 STAB2Q8WWQ8 2551 aa11.57□□□□□ -0.56
SYNE4-204ENST00000465425 SERP1Q9Y6X1 66 aa11.56□□□□□ -0.56
SYNE4-204ENST00000465425 APLNQ9ULZ1 77 aa11.55□□□□□ -0.56
SYNE4-204ENST00000465425 DNAH10Q8IVF4 4471 aa11.53□□□□□ -0.56
SYNE4-204ENST00000465425 COL7A1Q02388 2944 aa11.53□□□□□ -0.56
SYNE4-204ENST00000465425 IGFL1Q6UW32 110 aa11.53□□□□□ -0.56
SYNE4-204ENST00000465425 DSCR10P59022 87 aa11.52□□□□□ -0.57
SYNE4-204ENST00000465425 A0A0G2JQZ4 141 aa11.51□□□□□ -0.57
SYNE4-204ENST00000465425 K7EQZ3 153 aa11.51□□□□□ -0.57
SYNE4-204ENST00000465425 CHTF8P0CG12 524 aa11.51□□□□□ -0.57
SYNE4-204ENST00000465425 ATP5EP56381 51 aaPredicted RBP11.51□□□□□ -0.57
SYNE4-204ENST00000465425 FAM30AQ9NZY2 134 aa11.5□□□□□ -0.57
SYNE4-204ENST00000465425 EPM2AB3EWF7 344 aa11.49□□□□□ -0.57
SYNE4-204ENST00000465425 PHF5AQ7RTV0 110 aaKnown RBP11.49□□□□□ -0.57
SYNE4-204ENST00000465425 A0A0U1RQV1 116 aa11.49□□□□□ -0.57
SYNE4-204ENST00000465425 UBE2AP49459 152 aa11.49□□□□□ -0.57
SYNE4-204ENST00000465425 C5orf47Q569G3 176 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms