RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 C2orf66Q6UXQ4 117 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 ENKURQ8TC29 256 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 SMIM3Q9BZL3 60 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 NXT2Q9NPJ8 142 aaKnown RBP0.91□□□□□ -2.26
USP40-211ENST00000464956 BIN3Q9NQY0 253 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 HSPB11Q9Y547 144 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 OBSCNQ5VST9 7968 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 CTXND1A0A1B0GTU2 59 aa0.9□□□□□ -2.27
USP40-211ENST00000464956 F8WEM9 126 aa0.9□□□□□ -2.27
USP40-211ENST00000464956 H3BRM9 83 aa0.9□□□□□ -2.27
USP40-211ENST00000464956 PFDN1O60925 122 aa0.9□□□□□ -2.27
USP40-211ENST00000464956 ATP6V0CP27449 155 aa0.9□□□□□ -2.27
USP40-211ENST00000464956 SERF2P84101 59 aa0.9□□□□□ -2.27
USP40-211ENST00000464956 DSCR8Q96T75 97 aa0.9□□□□□ -2.27
USP40-211ENST00000464956 SMIM2Q9BVW6 85 aa0.9□□□□□ -2.27
USP40-211ENST00000464956 KRTAP4-3Q9BYR4 195 aa0.9□□□□□ -2.27
USP40-211ENST00000464956 TRBV10-2A0A0K0K1G8 114 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 A8MUN3 132 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 C3orf79P0CE67 100 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 IL15RAQ13261 267 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 NEDD8Q15843 81 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 ANKRD39Q53RE8 183 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 CENPWQ5EE01 88 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 CLEC2BQ92478 149 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 SMIM12Q96EX1 92 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 PSMG3Q9BT73 122 aaPredicted RBP0.89□□□□□ -2.27
USP40-211ENST00000464956 MRPL18Q9H0U6 180 aaKnown RBP0.89□□□□□ -2.27
USP40-211ENST00000464956 CST9LQ9H4G1 147 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 SS18L2Q9UHA2 77 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 CYSLTR1Q9Y271 337 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 CBY1Q9Y3M2 126 aa0.89□□□□□ -2.27
USP40-211ENST00000464956 TRBV24-1A0A075B6N3 115 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 IGLV5-45A0A087WSX0 123 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 A0A0J9YXY3 114 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 A0A0U1RRA0 63 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 TINCRA0A1B0GVN0 87 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 LINC00862A6NCI5 91 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 PHGR1C9JFL3 82 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 PAGE4O60829 102 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 GNG4P50150 75 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 MRPL51Q4U2R6 128 aaKnown RBP0.88□□□□□ -2.27
USP40-211ENST00000464956 RPL7L1Q6DKI1 246 aaKnown RBP0.88□□□□□ -2.27
USP40-211ENST00000464956 Q6JHZ5 121 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 KRTAP5-1Q6L8H4 278 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 SFT2D1Q8WV19 159 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 SIGMAR1Q99720 223 aa0.88□□□□□ -2.27
USP40-211ENST00000464956 NHP2Q9NX24 153 aaKnown RBP0.88□□□□□ -2.27
USP40-211ENST00000464956 IGLV5-39A0A0G2JS06 123 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 A0A1B0GUT8 65 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 MAP1LC3B2A6NCE7 125 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 HMSDA8MTL9 139 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 PPBPP02775 128 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 PET100P0DJ07 73 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 CKS2P33552 79 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 ZNF726P1Q15940 193 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 KRTAP5-5Q701N2 237 aaPredicted RBP0.87□□□□□ -2.27
USP40-211ENST00000464956 KRTAP9-4Q9BYQ2 154 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 MAP1LC3BQ9GZQ8 125 aa0.87□□□□□ -2.27
USP40-211ENST00000464956 SPANXB1Q9NS25 103 aaPredicted RBP0.87□□□□□ -2.27
USP40-211ENST00000464956 NAP1L6A6NFF2 107 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 IGIPA6NJ69 53 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 H0YIZ8 118 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 RPL23P62829 140 aaKnown RBP0.86□□□□□ -2.27
USP40-211ENST00000464956 CNPY1Q3B7I2 92 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 PYDC2Q56P42 97 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 AKR1C8PQ5T2L2 129 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 LYRM7Q5U5X0 104 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 COMMD7Q86VX2 200 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 MIR7-3HGQ8N6C7 128 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 S4R3F8 94 aa0.86□□□□□ -2.27
USP40-211ENST00000464956 IGLV5-48A0A075B6I7 105 aa0.85□□□□□ -2.27
USP40-211ENST00000464956 LINC00587B1AMM8 73 aa0.85□□□□□ -2.27
USP40-211ENST00000464956 SMIM13P0DJ93 91 aa0.85□□□□□ -2.27
USP40-211ENST00000464956 COX7BP24311 80 aa0.85□□□□□ -2.27
USP40-211ENST00000464956 CCL20P78556 96 aa0.85□□□□□ -2.27
USP40-211ENST00000464956 RIGQ13278 110 aa0.85□□□□□ -2.27
USP40-211ENST00000464956 MEIG1Q5JSS6 88 aa0.85□□□□□ -2.27
USP40-211ENST00000464956 ANAPC16Q96DE5 110 aa0.85□□□□□ -2.27
USP40-211ENST00000464956 MAP1LC3CQ9BXW4 147 aa0.85□□□□□ -2.27
USP40-211ENST00000464956 TRAV13-2A0A0B4J235 113 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 IGKV3D-7A0A0C4DH55 119 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 CENPXA8MT69 81 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 GATCO43716 136 aaKnown RBP0.84□□□□□ -2.27
USP40-211ENST00000464956 H2AFB1P0C5Y9 115 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 G0S2P27469 103 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 ORMDL2Q53FV1 153 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 FAM104BQ5XKR9 115 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 MT1LQ93083 61 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 C11orf52Q96A22 123 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 MIEN1Q9BRT3 115 aa0.84□□□□□ -2.27
USP40-211ENST00000464956 IGHV6-1A0A0B4J1U7 121 aa0.83□□□□□ -2.28
USP40-211ENST00000464956 HIGD1CA8MV81 97 aa0.83□□□□□ -2.28
USP40-211ENST00000464956 K7EQZ3 153 aa0.83□□□□□ -2.28
USP40-211ENST00000464956 NPYP01303 97 aa0.83□□□□□ -2.28
USP40-211ENST00000464956 IGKV4-1P06312 121 aa0.83□□□□□ -2.28
USP40-211ENST00000464956 NMUP48645 174 aa0.83□□□□□ -2.28
USP40-211ENST00000464956 ELOF1P60002 83 aaKnown RBP0.83□□□□□ -2.28
USP40-211ENST00000464956 CT83Q5H943 113 aa0.83□□□□□ -2.28
USP40-211ENST00000464956 KCNRGQ8N5I3 272 aa0.83□□□□□ -2.28
USP40-211ENST00000464956 PPP1R1CQ8WVI7 109 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms