RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 HIGD2AQ9BW72 106 aa13.71□□□□□ -0.21
CCDC28B-203ENST00000461819 COX8AP10176 69 aa13.7□□□□□ -0.22
CCDC28B-203ENST00000461819 MUSTN1Q8IVN3 82 aa13.7□□□□□ -0.22
CCDC28B-203ENST00000461819 LINC00518Q8N0U6 118 aa13.7□□□□□ -0.22
CCDC28B-203ENST00000461819 PRR26Q8N8Z3 221 aa13.7□□□□□ -0.22
CCDC28B-203ENST00000461819 SPATA45Q537H7 98 aa13.69□□□□□ -0.22
CCDC28B-203ENST00000461819 PPDPFQ9H3Y8 114 aa13.69□□□□□ -0.22
CCDC28B-203ENST00000461819 CBY1Q9Y3M2 126 aa13.69□□□□□ -0.22
CCDC28B-203ENST00000461819 KRTAP10-8P60410 259 aa13.68□□□□□ -0.22
CCDC28B-203ENST00000461819 KRTAP4-16G5E9R7 235 aaPredicted RBP13.67□□□□□ -0.22
CCDC28B-203ENST00000461819 B5MCH6 92 aa13.64□□□□□ -0.23
CCDC28B-203ENST00000461819 ZNF73O43830 326 aaPredicted RBP13.64□□□□□ -0.23
CCDC28B-203ENST00000461819 RPL13AP40429 203 aaKnown RBP13.64□□□□□ -0.23
CCDC28B-203ENST00000461819 C14orf144Q96I85 54 aa13.64□□□□□ -0.23
CCDC28B-203ENST00000461819 DLEU1O43261 78 aa13.63□□□□□ -0.23
CCDC28B-203ENST00000461819 PYY3Q5JQD4 70 aa13.62□□□□□ -0.23
CCDC28B-203ENST00000461819 HINT1P49773 126 aaPredicted RBP13.61□□□□□ -0.23
CCDC28B-203ENST00000461819 Q6ZRX8 168 aa13.61□□□□□ -0.23
CCDC28B-203ENST00000461819 A6NDN8 102 aa13.6□□□□□ -0.23
CCDC28B-203ENST00000461819 HIST1H4GQ99525 98 aa13.6□□□□□ -0.23
CCDC28B-203ENST00000461819 ANAPC11Q9NYG5 84 aa13.6□□□□□ -0.23
CCDC28B-203ENST00000461819 CRYGAP11844 174 aa13.59□□□□□ -0.23
CCDC28B-203ENST00000461819 SLC25A34Q6PIV7 304 aa13.59□□□□□ -0.23
CCDC28B-203ENST00000461819 SMCR5Q8TEV8 140 aa13.59□□□□□ -0.23
CCDC28B-203ENST00000461819 ZNF706Q9Y5V0 76 aaPredicted RBP13.59□□□□□ -0.23
CCDC28B-203ENST00000461819 A0A087X002 238 aa13.57□□□□□ -0.24
CCDC28B-203ENST00000461819 TRAV13-2A0A0B4J235 113 aa13.56□□□□□ -0.24
CCDC28B-203ENST00000461819 FAM229BQ4G0N7 80 aa13.56□□□□□ -0.24
CCDC28B-203ENST00000461819 Q9BRP9 147 aa13.56□□□□□ -0.24
CCDC28B-203ENST00000461819 A4D1N5 150 aa13.55□□□□□ -0.24
CCDC28B-203ENST00000461819 SPRR4Q96PI1 79 aa13.55□□□□□ -0.24
CCDC28B-203ENST00000461819 C6orf99Q4VX62 202 aa13.53□□□□□ -0.24
CCDC28B-203ENST00000461819 HIGD1BQ9P298 99 aa13.53□□□□□ -0.24
CCDC28B-203ENST00000461819 TYMSOSQ8TAI1 123 aa13.52□□□□□ -0.25
CCDC28B-203ENST00000461819 ERC2-IT1O76042 136 aa13.51□□□□□ -0.25
CCDC28B-203ENST00000461819 COX7BP24311 80 aa13.5□□□□□ -0.25
CCDC28B-203ENST00000461819 C2orf91Q6ZV80 131 aa13.49□□□□□ -0.25
CCDC28B-203ENST00000461819 C12orf57Q99622 126 aa13.49□□□□□ -0.25
CCDC28B-203ENST00000461819 ELOF1P60002 83 aaKnown RBP13.48□□□□□ -0.25
CCDC28B-203ENST00000461819 KRTAP13-2Q52LG2 175 aa13.48□□□□□ -0.25
CCDC28B-203ENST00000461819 GAGE2AQ6NT46 116 aa13.47□□□□□ -0.25
CCDC28B-203ENST00000461819 DHRS4-AS1Q9P1J3 65 aa13.47□□□□□ -0.25
CCDC28B-203ENST00000461819 TRBV7-6A0A0J9YX20 115 aa13.45□□□□□ -0.26
CCDC28B-203ENST00000461819 SMIM11BQ8TCY0 68 aa13.45□□□□□ -0.26
CCDC28B-203ENST00000461819 A0A1B0GWB2 263 aa13.44□□□□□ -0.26
CCDC28B-203ENST00000461819 TAL2Q16559 108 aa13.42□□□□□ -0.26
CCDC28B-203ENST00000461819 LINC00483Q53H64 154 aa13.42□□□□□ -0.26
CCDC28B-203ENST00000461819 C3orf22Q8N5N4 141 aa13.42□□□□□ -0.26
CCDC28B-203ENST00000461819 HMCN2Q8NDA2 5059 aa13.41□□□□□ -0.26
CCDC28B-203ENST00000461819 ST20-AS1Q8NBB2 130 aa13.4□□□□□ -0.26
CCDC28B-203ENST00000461819 CEND1Q8N111 149 aa13.39□□□□□ -0.27
CCDC28B-203ENST00000461819 RAB37Q96AX2 223 aa13.38□□□□□ -0.27
CCDC28B-203ENST00000461819 VAMP3Q15836 100 aa13.37□□□□□ -0.27
CCDC28B-203ENST00000461819 LINC00304Q8N9R0 145 aa13.37□□□□□ -0.27
CCDC28B-203ENST00000461819 UQCR10Q9UDW1 63 aa13.37□□□□□ -0.27
CCDC28B-203ENST00000461819 TMEM238LA0A1B0GVL6 79 aa13.36□□□□□ -0.27
CCDC28B-203ENST00000461819 A6NJY4 79 aa13.36□□□□□ -0.27
CCDC28B-203ENST00000461819 CFC1BP0CG36 223 aa13.36□□□□□ -0.27
CCDC28B-203ENST00000461819 CFC1P0CG37 223 aa13.36□□□□□ -0.27
CCDC28B-203ENST00000461819 TSPAN13O95857 204 aa13.35□□□□□ -0.27
CCDC28B-203ENST00000461819 IGLV9-49A0A0B4J1Y8 123 aa13.34□□□□□ -0.27
CCDC28B-203ENST00000461819 H7C2G1 150 aa13.34□□□□□ -0.27
CCDC28B-203ENST00000461819 NHP2Q9NX24 153 aaKnown RBP13.34□□□□□ -0.27
CCDC28B-203ENST00000461819 A0A0B4J2C4 111 aa13.33□□□□□ -0.28
CCDC28B-203ENST00000461819 HSD52Q0P140 79 aa13.33□□□□□ -0.28
CCDC28B-203ENST00000461819 SLC25A20O43772 301 aa13.31□□□□□ -0.28
CCDC28B-203ENST00000461819 SMIM6P0DI80 62 aa13.31□□□□□ -0.28
CCDC28B-203ENST00000461819 FXYD2P54710 66 aa13.31□□□□□ -0.28
CCDC28B-203ENST00000461819 MOBPQ13875 183 aa13.31□□□□□ -0.28
CCDC28B-203ENST00000461819 DEFB105AQ8NG35 78 aa13.3□□□□□ -0.28
CCDC28B-203ENST00000461819 Q8NBF4 154 aa13.29□□□□□ -0.28
CCDC28B-203ENST00000461819 SPRR1BP22528 89 aa13.28□□□□□ -0.28
CCDC28B-203ENST00000461819 BVES-AS1Q5T3Y7 98 aa13.28□□□□□ -0.28
CCDC28B-203ENST00000461819 C9orf153Q5TBE3 101 aa13.28□□□□□ -0.28
CCDC28B-203ENST00000461819 Q1RN00 199 aa13.27□□□□□ -0.29
CCDC28B-203ENST00000461819 PRO1933Q9H354 126 aa13.27□□□□□ -0.29
CCDC28B-203ENST00000461819 C4orf48Q5BLP8 95 aa13.26□□□□□ -0.29
CCDC28B-203ENST00000461819 PRO1854Q9UHT4 67 aa13.26□□□□□ -0.29
CCDC28B-203ENST00000461819 TEX49A0A1B0GTD5 131 aa13.25□□□□□ -0.29
CCDC28B-203ENST00000461819 LINC00575Q6W349 94 aa13.25□□□□□ -0.29
CCDC28B-203ENST00000461819 SPAG11AQ6PDA7 123 aa13.24□□□□□ -0.29
CCDC28B-203ENST00000461819 LAMTOR3Q9UHA4 124 aa13.24□□□□□ -0.29
CCDC28B-203ENST00000461819 SSBP3-AS1Q7Z2R9 100 aa13.23□□□□□ -0.29
CCDC28B-203ENST00000461819 hADV29S1A0JD25 119 aa13.22□□□□□ -0.29
CCDC28B-203ENST00000461819 LOC105371267A0A1B0GV96 52 aa13.21□□□□□ -0.29
CCDC28B-203ENST00000461819 IGLV5-48A0A075B6I7 105 aa13.2□□□□□ -0.3
CCDC28B-203ENST00000461819 LINC01547P58512 204 aaPredicted RBP13.19□□□□□ -0.3
CCDC28B-203ENST00000461819 CTAG1AP78358 180 aa13.19□□□□□ -0.3
CCDC28B-203ENST00000461819 PRR4Q16378 134 aa13.19□□□□□ -0.3
CCDC28B-203ENST00000461819 Q6ZQY7 126 aa13.18□□□□□ -0.3
CCDC28B-203ENST00000461819 K7ERJ3 54 aa13.17□□□□□ -0.3
CCDC28B-203ENST00000461819 H0YGX0 51 aa13.15□□□□□ -0.3
CCDC28B-203ENST00000461819 SNCGO76070 127 aa13.14□□□□□ -0.31
CCDC28B-203ENST00000461819 SPINK1P00995 79 aa13.14□□□□□ -0.31
CCDC28B-203ENST00000461819 Q8N377 158 aa13.14□□□□□ -0.31
CCDC28B-203ENST00000461819 RETNLBQ9BQ08 111 aa13.14□□□□□ -0.31
CCDC28B-203ENST00000461819 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.13□□□□□ -0.31
CCDC28B-203ENST00000461819 SMIM29Q86T20 159 aa13.13□□□□□ -0.31
CCDC28B-203ENST00000461819 TSTD3H0UI37 97 aa13.1□□□□□ -0.31
CCDC28B-203ENST00000461819 TRIAP1O43715 76 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms