RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 HIST2H2BEQ16778 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.97□□□□□ -1.13
USP4-206ENST00000461553 SOSTDC1Q6X4U4 206 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST1H2BHQ93079 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST1H2BNQ99877 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST1H2BMQ99879 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 Q9BRP9 147 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 CBY1Q9Y3M2 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 ERC2-IT1O76042 136 aa7.96□□□□□ -1.14
USP4-206ENST00000461553 ZNF73O43830 326 aaPredicted RBP7.95□□□□□ -1.14
USP4-206ENST00000461553 SPINK1P00995 79 aa7.95□□□□□ -1.14
USP4-206ENST00000461553 ADAMTSL4-AS1Q5T5F5 129 aa7.95□□□□□ -1.14
USP4-206ENST00000461553 FAT4Q6V0I7 4981 aa7.95□□□□□ -1.14
USP4-206ENST00000461553 LINC01545Q5VT33 79 aa7.94□□□□□ -1.14
USP4-206ENST00000461553 PET117Q6UWS5 81 aa7.94□□□□□ -1.14
USP4-206ENST00000461553 SPANXCQ9NY87 97 aa7.94□□□□□ -1.14
USP4-206ENST00000461553 ZNF815PA8K554 130 aa7.93□□□□□ -1.14
USP4-206ENST00000461553 EIF4EBP3O60516 100 aaPredicted RBP7.93□□□□□ -1.14
USP4-206ENST00000461553 HINT1P49773 126 aaPredicted RBP7.93□□□□□ -1.14
USP4-206ENST00000461553 TIMM17BO60830 172 aa7.92□□□□□ -1.14
USP4-206ENST00000461553 C9orf153Q5TBE3 101 aa7.92□□□□□ -1.14
USP4-206ENST00000461553 LINC00308Q8TCZ7 52 aa7.92□□□□□ -1.14
USP4-206ENST00000461553 RPS29P62273 56 aaKnown RBP7.91□□□□□ -1.14
USP4-206ENST00000461553 SSBP3-AS1Q7Z2R9 100 aa7.91□□□□□ -1.14
USP4-206ENST00000461553 OR13C6PQ8NH95 151 aa7.91□□□□□ -1.14
USP4-206ENST00000461553 LITAFQ99732 161 aa7.91□□□□□ -1.14
USP4-206ENST00000461553 C3orf79P0CE67 100 aa7.89□□□□□ -1.15
USP4-206ENST00000461553 SPANXDQ9BXN6 97 aa7.89□□□□□ -1.15
USP4-206ENST00000461553 C20orf202A1L168 122 aa7.88□□□□□ -1.15
USP4-206ENST00000461553 KRTDAPP60985 99 aa7.88□□□□□ -1.15
USP4-206ENST00000461553 C5orf52A6NGY3 159 aa7.87□□□□□ -1.15
USP4-206ENST00000461553 KRTAP13-3Q3SY46 172 aa7.87□□□□□ -1.15
USP4-206ENST00000461553 ST20-AS1Q8NBB2 130 aa7.87□□□□□ -1.15
USP4-206ENST00000461553 TTTY13Q9BZ97 58 aa7.87□□□□□ -1.15
USP4-206ENST00000461553 SLC25A20O43772 301 aa7.86□□□□□ -1.15
USP4-206ENST00000461553 SCGB1D4Q6XE38 83 aa7.86□□□□□ -1.15
USP4-206ENST00000461553 Q8N377 158 aa7.86□□□□□ -1.15
USP4-206ENST00000461553 DHRS4-AS1Q9P1J3 65 aa7.86□□□□□ -1.15
USP4-206ENST00000461553 COA6Q5JTJ3 125 aaKnown RBP7.85□□□□□ -1.15
USP4-206ENST00000461553 SLC25A34Q6PIV7 304 aa7.85□□□□□ -1.15
USP4-206ENST00000461553 LINC00518Q8N0U6 118 aa7.85□□□□□ -1.15
USP4-206ENST00000461553 COPS9Q8WXC6 57 aa7.84□□□□□ -1.15
USP4-206ENST00000461553 ELOF1P60002 83 aaKnown RBP7.83□□□□□ -1.16
USP4-206ENST00000461553 COX7BP24311 80 aa7.82□□□□□ -1.16
USP4-206ENST00000461553 C6orf99Q4VX62 202 aa7.82□□□□□ -1.16
USP4-206ENST00000461553 SPRR1BP22528 89 aa7.81□□□□□ -1.16
USP4-206ENST00000461553 AKR1D1P51857 326 aa7.81□□□□□ -1.16
USP4-206ENST00000461553 ANKRD39Q53RE8 183 aa7.81□□□□□ -1.16
USP4-206ENST00000461553 ASB16-AS1Q495Z4 193 aa7.8□□□□□ -1.16
USP4-206ENST00000461553 LIMD2Q9BT23 127 aa7.8□□□□□ -1.16
USP4-206ENST00000461553 LAMTOR3Q9UHA4 124 aa7.8□□□□□ -1.16
USP4-206ENST00000461553 IFITM1P13164 125 aa7.79□□□□□ -1.16
USP4-206ENST00000461553 SEC61BP60468 96 aaKnown RBP7.79□□□□□ -1.16
USP4-206ENST00000461553 ATOH7Q8N100 152 aa7.79□□□□□ -1.16
USP4-206ENST00000461553 LCE2AQ5TA79 106 aaPredicted RBP7.78□□□□□ -1.16
USP4-206ENST00000461553 Q6ZVH6 145 aa7.78□□□□□ -1.16
USP4-206ENST00000461553 A0A1B0GWB2 263 aa7.77□□□□□ -1.17
USP4-206ENST00000461553 TAL2Q16559 108 aa7.77□□□□□ -1.17
USP4-206ENST00000461553 TRBV7-6A0A0J9YX20 115 aa7.76□□□□□ -1.17
USP4-206ENST00000461553 A6NDN8 102 aa7.76□□□□□ -1.17
USP4-206ENST00000461553 HRCT1Q6UXD1 115 aa7.76□□□□□ -1.17
USP4-206ENST00000461553 Q1RN00 199 aa7.75□□□□□ -1.17
USP4-206ENST00000461553 PCP2Q8IVA1 136 aa7.75□□□□□ -1.17
USP4-206ENST00000461553 DEFB105AQ8NG35 78 aa7.75□□□□□ -1.17
USP4-206ENST00000461553 TEX49A0A1B0GTD5 131 aa7.74□□□□□ -1.17
USP4-206ENST00000461553 SNRPEP62304 92 aaKnown RBP7.73□□□□□ -1.17
USP4-206ENST00000461553 MUSTN1Q8IVN3 82 aa7.73□□□□□ -1.17
USP4-206ENST00000461553 TRAV13-2A0A0B4J235 113 aa7.72□□□□□ -1.17
USP4-206ENST00000461553 XP32Q5T750 250 aa7.72□□□□□ -1.17
USP4-206ENST00000461553 PRO1933Q9H354 126 aa7.72□□□□□ -1.17
USP4-206ENST00000461553 NHP2Q9NX24 153 aaKnown RBP7.72□□□□□ -1.17
USP4-206ENST00000461553 A4D1N5 150 aa7.71□□□□□ -1.18
USP4-206ENST00000461553 S100A2P29034 98 aa7.71□□□□□ -1.18
USP4-206ENST00000461553 CD164Q04900 197 aa7.71□□□□□ -1.18
USP4-206ENST00000461553 HSBP1L1C9JCN9 74 aa7.7□□□□□ -1.18
USP4-206ENST00000461553 IGLV5-48A0A075B6I7 105 aa7.69□□□□□ -1.18
USP4-206ENST00000461553 H7C2G1 150 aa7.69□□□□□ -1.18
USP4-206ENST00000461553 HIST3H2BBQ8N257 126 aa7.68□□□□□ -1.18
USP4-206ENST00000461553 SMIM11BQ8TCY0 68 aa7.68□□□□□ -1.18
USP4-206ENST00000461553 LINC01547P58512 204 aaPredicted RBP7.67□□□□□ -1.18
USP4-206ENST00000461553 SMIM29Q86T20 159 aa7.67□□□□□ -1.18
USP4-206ENST00000461553 HIST1H2BLQ99880 126 aa7.67□□□□□ -1.18
USP4-206ENST00000461553 KRTAP9-2Q9BYQ4 174 aa7.67□□□□□ -1.18
USP4-206ENST00000461553 KRTAP4-1Q9BYQ7 146 aa7.67□□□□□ -1.18
USP4-206ENST00000461553 LCE2DQ5TA82 110 aaPredicted RBP7.66□□□□□ -1.18
USP4-206ENST00000461553 C9orf92A6NGG3 77 aa7.65□□□□□ -1.18
USP4-206ENST00000461553 F8WEM9 126 aa7.64□□□□□ -1.19
USP4-206ENST00000461553 S100A6P06703 90 aa7.64□□□□□ -1.19
USP4-206ENST00000461553 VAMP3Q15836 100 aa7.64□□□□□ -1.19
USP4-206ENST00000461553 Q5XG85 94 aa7.63□□□□□ -1.19
USP4-206ENST00000461553 A0A0G2JQZ4 141 aa7.61□□□□□ -1.19
USP4-206ENST00000461553 S100A1P23297 94 aa7.61□□□□□ -1.19
USP4-206ENST00000461553 PCOTHQ58A44 107 aa7.59□□□□□ -1.19
USP4-206ENST00000461553 LINC00575Q6W349 94 aa7.59□□□□□ -1.19
USP4-206ENST00000461553 Q6ZQY7 126 aa7.59□□□□□ -1.19
USP4-206ENST00000461553 hADV29S1A0JD25 119 aa7.58□□□□□ -1.2
USP4-206ENST00000461553 TCL1BO95988 128 aa7.58□□□□□ -1.2
USP4-206ENST00000461553 C1orf195Q5TG92 126 aa7.58□□□□□ -1.2
USP4-206ENST00000461553 IGLV8-61A0A075B6I0 122 aa7.57□□□□□ -1.2
USP4-206ENST00000461553 SCGB1D1O95968 90 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms