RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 M0R378 163 aa4.19□□□□□ -1.74
USP54-208ENST00000461520 CBLN2Q8IUK8 224 aa4.19□□□□□ -1.74
USP54-208ENST00000461520 PLEKHB2Q96CS7 222 aa4.19□□□□□ -1.74
USP54-208ENST00000461520 SNAPINO95295 136 aa4.18□□□□□ -1.74
USP54-208ENST00000461520 NDUFA5Q16718 116 aa4.18□□□□□ -1.74
USP54-208ENST00000461520 SVBPQ8N300 66 aa4.18□□□□□ -1.74
USP54-208ENST00000461520 Q8NDZ9 215 aa4.18□□□□□ -1.74
USP54-208ENST00000461520 CHTOPQ9Y3Y2 248 aaKnown RBP4.18□□□□□ -1.74
USP54-208ENST00000461520 MUC17Q685J3 4493 aa4.17□□□□□ -1.74
USP54-208ENST00000461520 TRAV12-1A0A0B4J245 112 aa4.17□□□□□ -1.74
USP54-208ENST00000461520 TMEM223A0PJW6 202 aa4.17□□□□□ -1.74
USP54-208ENST00000461520 LINC00158P58513 81 aa4.17□□□□□ -1.74
USP54-208ENST00000461520 TPRXLQ17RH7 258 aa4.17□□□□□ -1.74
USP54-208ENST00000461520 CHCHD1Q96BP2 118 aaKnown RBP4.17□□□□□ -1.74
USP54-208ENST00000461520 YPEL4Q96NS1 127 aa4.17□□□□□ -1.74
USP54-208ENST00000461520 RETNLBQ9BQ08 111 aa4.17□□□□□ -1.74
USP54-208ENST00000461520 IFI27L1Q96BM0 104 aa4.16□□□□□ -1.74
USP54-208ENST00000461520 HIGD2AQ9BW72 106 aa4.16□□□□□ -1.74
USP54-208ENST00000461520 A0A0U1RRA0 63 aa4.15□□□□□ -1.75
USP54-208ENST00000461520 LINC00587B1AMM8 73 aa4.15□□□□□ -1.75
USP54-208ENST00000461520 HERV-K104P63124 156 aa4.15□□□□□ -1.75
USP54-208ENST00000461520 SPAG11AQ6PDA7 123 aa4.15□□□□□ -1.75
USP54-208ENST00000461520 C3orf22Q8N5N4 141 aa4.15□□□□□ -1.75
USP54-208ENST00000461520 SPRR4Q96PI1 79 aa4.15□□□□□ -1.75
USP54-208ENST00000461520 ZNF706Q9Y5V0 76 aaPredicted RBP4.15□□□□□ -1.75
USP54-208ENST00000461520 SMIM13P0DJ93 91 aa4.14□□□□□ -1.75
USP54-208ENST00000461520 SPRR1AP35321 89 aa4.14□□□□□ -1.75
USP54-208ENST00000461520 MEIG1Q5JSS6 88 aa4.14□□□□□ -1.75
USP54-208ENST00000461520 BOD1L2Q8IYS8 172 aa4.14□□□□□ -1.75
USP54-208ENST00000461520 MIR7-3HGQ8N6C7 128 aa4.14□□□□□ -1.75
USP54-208ENST00000461520 LINC00337Q8N6G1 96 aa4.14□□□□□ -1.75
USP54-208ENST00000461520 KCNQ1DNQ9H478 68 aa4.14□□□□□ -1.75
USP54-208ENST00000461520 HSBP1O75506 76 aa4.13□□□□□ -1.75
USP54-208ENST00000461520 S100A1P23297 94 aa4.13□□□□□ -1.75
USP54-208ENST00000461520 MAP1LC3CQ9BXW4 147 aa4.13□□□□□ -1.75
USP54-208ENST00000461520 PPDPFQ9H3Y8 114 aa4.13□□□□□ -1.75
USP54-208ENST00000461520 FSIP2Q5CZC0 6907 aa4.12□□□□□ -1.75
USP54-208ENST00000461520 MYMXA0A1B0GTQ4 84 aa4.12□□□□□ -1.75
USP54-208ENST00000461520 ETDCA0A1B0GVM5 59 aa4.12□□□□□ -1.75
USP54-208ENST00000461520 KRTAP4-16G5E9R7 235 aaPredicted RBP4.12□□□□□ -1.75
USP54-208ENST00000461520 NCR3O14931 201 aa4.12□□□□□ -1.75
USP54-208ENST00000461520 TRGC2P03986 189 aa4.12□□□□□ -1.75
USP54-208ENST00000461520 S100A12P80511 92 aa4.12□□□□□ -1.75
USP54-208ENST00000461520 FP248Q71RG6 208 aaPredicted RBP4.12□□□□□ -1.75
USP54-208ENST00000461520 FAM19A2Q8N3H0 131 aa4.12□□□□□ -1.75
USP54-208ENST00000461520 NDUFA12Q9UI09 145 aa4.12□□□□□ -1.75
USP54-208ENST00000461520 LOC107984156A0A0G2JMH3 177 aa4.11□□□□□ -1.75
USP54-208ENST00000461520 TRBV10-3A0A0K0K1G6 114 aa4.11□□□□□ -1.75
USP54-208ENST00000461520 SPINK1P00995 79 aa4.11□□□□□ -1.75
USP54-208ENST00000461520 ARL17AQ8IVW1 177 aa4.11□□□□□ -1.75
USP54-208ENST00000461520 Q8N377 158 aa4.11□□□□□ -1.75
USP54-208ENST00000461520 SMCR5Q8TEV8 140 aa4.11□□□□□ -1.75
USP54-208ENST00000461520 TRBV10-2A0A0K0K1G8 114 aa4.1□□□□□ -1.75
USP54-208ENST00000461520 H0Y8G0 127 aa4.1□□□□□ -1.75
USP54-208ENST00000461520 LEPROTL1O95214 131 aa4.1□□□□□ -1.75
USP54-208ENST00000461520 KRTAP12-2P59991 146 aa4.1□□□□□ -1.75
USP54-208ENST00000461520 LINC00483Q53H64 154 aa4.1□□□□□ -1.75
USP54-208ENST00000461520 Q8NBF4 154 aa4.1□□□□□ -1.75
USP54-208ENST00000461520 COLCA2A8K830 154 aa4.09□□□□□ -1.75
USP54-208ENST00000461520 LEPROTO15243 131 aa4.09□□□□□ -1.75
USP54-208ENST00000461520 SERF1AO75920 110 aa4.09□□□□□ -1.75
USP54-208ENST00000461520 PLNP26678 52 aa4.09□□□□□ -1.75
USP54-208ENST00000461520 NMUP48645 174 aa4.09□□□□□ -1.75
USP54-208ENST00000461520 DAND5Q8N907 189 aa4.09□□□□□ -1.75
USP54-208ENST00000461520 J3QQQ9 107 aa4.08□□□□□ -1.76
USP54-208ENST00000461520 NDUFC2O95298 119 aa4.08□□□□□ -1.76
USP54-208ENST00000461520 DDTP30046 118 aa4.08□□□□□ -1.76
USP54-208ENST00000461520 TSPEAR-AS2P59090 65 aa4.08□□□□□ -1.76
USP54-208ENST00000461520 HERVK_113P61574 105 aa4.08□□□□□ -1.76
USP54-208ENST00000461520 RPS29P62273 56 aaKnown RBP4.08□□□□□ -1.76
USP54-208ENST00000461520 SSBP3-AS1Q7Z2R9 100 aa4.08□□□□□ -1.76
USP54-208ENST00000461520 MIEN1Q9BRT3 115 aa4.08□□□□□ -1.76
USP54-208ENST00000461520 SPANXB1Q9NS25 103 aaPredicted RBP4.08□□□□□ -1.76
USP54-208ENST00000461520 DPM2O94777 84 aa4.07□□□□□ -1.76
USP54-208ENST00000461520 FABP4P15090 132 aa4.07□□□□□ -1.76
USP54-208ENST00000461520 KRTAP13-3Q3SY46 172 aa4.07□□□□□ -1.76
USP54-208ENST00000461520 Q6ZRX8 168 aa4.07□□□□□ -1.76
USP54-208ENST00000461520 PMCHL2Q9BQD1 86 aa4.07□□□□□ -1.76
USP54-208ENST00000461520 HSPB8Q9UJY1 196 aa4.07□□□□□ -1.76
USP54-208ENST00000461520 ERC2-IT1O76042 136 aa4.06□□□□□ -1.76
USP54-208ENST00000461520 IGLV6-57P01721 117 aa4.06□□□□□ -1.76
USP54-208ENST00000461520 IGKCP01834 107 aa4.06□□□□□ -1.76
USP54-208ENST00000461520 LGALS3P17931 250 aaKnown RBP4.06□□□□□ -1.76
USP54-208ENST00000461520 MOBPQ13875 183 aa4.06□□□□□ -1.76
USP54-208ENST00000461520 JOSD1Q15040 202 aaPredicted RBP4.06□□□□□ -1.76
USP54-208ENST00000461520 S100A7L2Q5SY68 101 aa4.06□□□□□ -1.76
USP54-208ENST00000461520 Q9BRP9 147 aa4.06□□□□□ -1.76
USP54-208ENST00000461520 TRAV23DV6A0A075B6W5 121 aa4.05□□□□□ -1.76
USP54-208ENST00000461520 ASB16-AS1Q495Z4 193 aa4.05□□□□□ -1.76
USP54-208ENST00000461520 OBSCNQ5VST9 7968 aa4.05□□□□□ -1.76
USP54-208ENST00000461520 C5orf52A6NGY3 159 aa4.04□□□□□ -1.76
USP54-208ENST00000461520 SLC25A20O43772 301 aa4.04□□□□□ -1.76
USP54-208ENST00000461520 ZNF73O43830 326 aaPredicted RBP4.04□□□□□ -1.76
USP54-208ENST00000461520 SCGB1D1O95968 90 aa4.04□□□□□ -1.76
USP54-208ENST00000461520 CBY1Q9Y3M2 126 aa4.04□□□□□ -1.76
USP54-208ENST00000461520 A0A0J9YXY3 114 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 E9PLD3 99 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST1H2BKO60814 126 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 S100A6P06703 90 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST1H2BJP06899 126 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms