RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 Q6ZRX8 168 aa6.92□□□□□ -1.3
USP40-210ENST00000454354 LITAFQ99732 161 aa6.91□□□□□ -1.3
USP40-210ENST00000454354 Q9BRP9 147 aa6.91□□□□□ -1.3
USP40-210ENST00000454354 MUC17Q685J3 4493 aa6.9□□□□□ -1.3
USP40-210ENST00000454354 TRAV23DV6A0A075B6W5 121 aa6.9□□□□□ -1.3
USP40-210ENST00000454354 TIMM17BO60830 172 aa6.9□□□□□ -1.3
USP40-210ENST00000454354 ERC2-IT1O76042 136 aa6.9□□□□□ -1.3
USP40-210ENST00000454354 TPRXLQ17RH7 258 aa6.9□□□□□ -1.3
USP40-210ENST00000454354 S100A7L2Q5SY68 101 aa6.9□□□□□ -1.3
USP40-210ENST00000454354 PPDPFQ9H3Y8 114 aa6.9□□□□□ -1.3
USP40-210ENST00000454354 C20orf202A1L168 122 aa6.89□□□□□ -1.31
USP40-210ENST00000454354 NPC2P61916 151 aa6.89□□□□□ -1.31
USP40-210ENST00000454354 Q8NBF4 154 aa6.89□□□□□ -1.31
USP40-210ENST00000454354 C3orf79P0CE67 100 aa6.88□□□□□ -1.31
USP40-210ENST00000454354 AKR1D1P51857 326 aa6.88□□□□□ -1.31
USP40-210ENST00000454354 KRTDAPP60985 99 aa6.88□□□□□ -1.31
USP40-210ENST00000454354 LINC00308Q8TCZ7 52 aa6.88□□□□□ -1.31
USP40-210ENST00000454354 SPANXCQ9NY87 97 aa6.88□□□□□ -1.31
USP40-210ENST00000454354 IGLV7-46A0A075B6I9 117 aa6.87□□□□□ -1.31
USP40-210ENST00000454354 ZNF73O43830 326 aaPredicted RBP6.87□□□□□ -1.31
USP40-210ENST00000454354 SNRPEP62304 92 aaKnown RBP6.87□□□□□ -1.31
USP40-210ENST00000454354 JOSD1Q15040 202 aaPredicted RBP6.87□□□□□ -1.31
USP40-210ENST00000454354 GAGE2AQ6NT46 116 aa6.87□□□□□ -1.31
USP40-210ENST00000454354 CBY1Q9Y3M2 126 aa6.87□□□□□ -1.31
USP40-210ENST00000454354 ZNF815PA8K554 130 aa6.86□□□□□ -1.31
USP40-210ENST00000454354 C4orf48Q5BLP8 95 aa6.86□□□□□ -1.31
USP40-210ENST00000454354 FP248Q71RG6 208 aaPredicted RBP6.86□□□□□ -1.31
USP40-210ENST00000454354 HIST3H2BBQ8N257 126 aa6.86□□□□□ -1.31
USP40-210ENST00000454354 SPINK1P00995 79 aa6.85□□□□□ -1.31
USP40-210ENST00000454354 TTTY13Q9BZ97 58 aa6.85□□□□□ -1.31
USP40-210ENST00000454354 C5orf52A6NGY3 159 aa6.84□□□□□ -1.31
USP40-210ENST00000454354 RPS29P62273 56 aaKnown RBP6.84□□□□□ -1.31
USP40-210ENST00000454354 MOBPQ13875 183 aa6.84□□□□□ -1.31
USP40-210ENST00000454354 SSBP3-AS1Q7Z2R9 100 aa6.84□□□□□ -1.31
USP40-210ENST00000454354 HIST1H2BLQ99880 126 aa6.84□□□□□ -1.31
USP40-210ENST00000454354 IGLV9-49A0A0B4J1Y8 123 aa6.83□□□□□ -1.32
USP40-210ENST00000454354 SPANXDQ9BXN6 97 aa6.83□□□□□ -1.32
USP40-210ENST00000454354 CDIP1Q9H305 208 aa6.83□□□□□ -1.32
USP40-210ENST00000454354 HINT1P49773 126 aaPredicted RBP6.81□□□□□ -1.32
USP40-210ENST00000454354 LINC00518Q8N0U6 118 aa6.81□□□□□ -1.32
USP40-210ENST00000454354 TMA7Q9Y2S6 64 aaKnown RBP6.81□□□□□ -1.32
USP40-210ENST00000454354 A0A0U1RQV1 116 aa6.8□□□□□ -1.32
USP40-210ENST00000454354 ANKRD39Q53RE8 183 aa6.8□□□□□ -1.32
USP40-210ENST00000454354 ST20-AS1Q8NBB2 130 aa6.8□□□□□ -1.32
USP40-210ENST00000454354 OR13C6PQ8NH95 151 aa6.8□□□□□ -1.32
USP40-210ENST00000454354 FAT4Q6V0I7 4981 aa6.8□□□□□ -1.32
USP40-210ENST00000454354 HSBP1L1C9JCN9 74 aa6.79□□□□□ -1.32
USP40-210ENST00000454354 SPRR1BP22528 89 aa6.79□□□□□ -1.32
USP40-210ENST00000454354 ELOF1P60002 83 aaKnown RBP6.79□□□□□ -1.32
USP40-210ENST00000454354 KRTAP13-3Q3SY46 172 aa6.79□□□□□ -1.32
USP40-210ENST00000454354 SCGB1D4Q6XE38 83 aa6.79□□□□□ -1.32
USP40-210ENST00000454354 Q8N377 158 aa6.79□□□□□ -1.32
USP40-210ENST00000454354 DHRS4-AS1Q9P1J3 65 aa6.79□□□□□ -1.32
USP40-210ENST00000454354 SCGB1D1O95968 90 aa6.78□□□□□ -1.32
USP40-210ENST00000454354 COPS9Q8WXC6 57 aa6.78□□□□□ -1.32
USP40-210ENST00000454354 IFITM1P13164 125 aa6.77□□□□□ -1.33
USP40-210ENST00000454354 C9orf153Q5TBE3 101 aa6.77□□□□□ -1.33
USP40-210ENST00000454354 Q6ZVH6 145 aa6.77□□□□□ -1.33
USP40-210ENST00000454354 ATOH7Q8N100 152 aa6.77□□□□□ -1.33
USP40-210ENST00000454354 TRBV7-6A0A0J9YX20 115 aa6.76□□□□□ -1.33
USP40-210ENST00000454354 SLC25A20O43772 301 aa6.76□□□□□ -1.33
USP40-210ENST00000454354 COX7BP24311 80 aa6.76□□□□□ -1.33
USP40-210ENST00000454354 C6orf99Q4VX62 202 aa6.76□□□□□ -1.33
USP40-210ENST00000454354 SLC25A34Q6PIV7 304 aa6.75□□□□□ -1.33
USP40-210ENST00000454354 PCP2Q8IVA1 136 aa6.75□□□□□ -1.33
USP40-210ENST00000454354 A0A1B0GWB2 263 aa6.72□□□□□ -1.33
USP40-210ENST00000454354 MUSTN1Q8IVN3 82 aa6.72□□□□□ -1.33
USP40-210ENST00000454354 LAMTOR3Q9UHA4 124 aa6.72□□□□□ -1.33
USP40-210ENST00000454354 LOC100996750A0A140TA64 210 aa6.71□□□□□ -1.34
USP40-210ENST00000454354 ASB16-AS1Q495Z4 193 aa6.71□□□□□ -1.34
USP40-210ENST00000454354 LCE2AQ5TA79 106 aaPredicted RBP6.71□□□□□ -1.34
USP40-210ENST00000454354 KRTAP4-6Q9BYQ5 205 aa6.71□□□□□ -1.34
USP40-210ENST00000454354 A6NDN8 102 aa6.7□□□□□ -1.34
USP40-210ENST00000454354 IGLV5-48A0A075B6I7 105 aa6.69□□□□□ -1.34
USP40-210ENST00000454354 TRAV13-2A0A0B4J235 113 aa6.69□□□□□ -1.34
USP40-210ENST00000454354 TEX49A0A1B0GTD5 131 aa6.69□□□□□ -1.34
USP40-210ENST00000454354 LIMD2Q9BT23 127 aa6.69□□□□□ -1.34
USP40-210ENST00000454354 A4D1N5 150 aa6.68□□□□□ -1.34
USP40-210ENST00000454354 LINC01547P58512 204 aaPredicted RBP6.68□□□□□ -1.34
USP40-210ENST00000454354 TAL2Q16559 108 aa6.68□□□□□ -1.34
USP40-210ENST00000454354 VAMP8Q9BV40 100 aa6.68□□□□□ -1.34
USP40-210ENST00000454354 CD164Q04900 197 aa6.67□□□□□ -1.34
USP40-210ENST00000454354 Q1RN00 199 aa6.67□□□□□ -1.34
USP40-210ENST00000454354 XP32Q5T750 250 aa6.67□□□□□ -1.34
USP40-210ENST00000454354 SMIM29Q86T20 159 aa6.67□□□□□ -1.34
USP40-210ENST00000454354 SEC61BP60468 96 aaKnown RBP6.66□□□□□ -1.34
USP40-210ENST00000454354 DEFB105AQ8NG35 78 aa6.66□□□□□ -1.34
USP40-210ENST00000454354 SMIM11BQ8TCY0 68 aa6.66□□□□□ -1.34
USP40-210ENST00000454354 PRO1933Q9H354 126 aa6.66□□□□□ -1.34
USP40-210ENST00000454354 NHP2Q9NX24 153 aaKnown RBP6.66□□□□□ -1.34
USP40-210ENST00000454354 SPATA45Q537H7 98 aa6.64□□□□□ -1.35
USP40-210ENST00000454354 Q5XG85 94 aa6.64□□□□□ -1.35
USP40-210ENST00000454354 HRCT1Q6UXD1 115 aa6.64□□□□□ -1.35
USP40-210ENST00000454354 PAM16Q9Y3D7 125 aa6.64□□□□□ -1.35
USP40-210ENST00000454354 H7C2G1 150 aa6.62□□□□□ -1.35
USP40-210ENST00000454354 COX8AP10176 69 aa6.62□□□□□ -1.35
USP40-210ENST00000454354 PYY3Q5JQD4 70 aa6.62□□□□□ -1.35
USP40-210ENST00000454354 KRTAP4-1Q9BYQ7 146 aa6.62□□□□□ -1.35
USP40-210ENST00000454354 DLEU1O43261 78 aa6.6□□□□□ -1.35
USP40-210ENST00000454354 VAMP3Q15836 100 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms