RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 USP9XQ93008 2570 aaPredicted RBP8.79□□□□□ -1
USP40-208ENST00000450966 A0A0A0MQY5 61 aa8.78□□□□□ -1
USP40-208ENST00000450966 A0A096LNT2 108 aa8.78□□□□□ -1
USP40-208ENST00000450966 IGFL1Q6UW32 110 aa8.78□□□□□ -1
USP40-208ENST00000450966 Q8N377 158 aa8.77□□□□□ -1
USP40-208ENST00000450966 TLN2Q9Y4G6 2542 aa8.77□□□□□ -1.01
USP40-208ENST00000450966 RTL8CO15255 209 aa8.76□□□□□ -1.01
USP40-208ENST00000450966 ZNF462Q96JM2 2506 aa8.76□□□□□ -1.01
USP40-208ENST00000450966 C9orf163Q8N9P6 203 aa8.75□□□□□ -1.01
USP40-208ENST00000450966 C19orf73Q9NVV2 129 aa8.75□□□□□ -1.01
USP40-208ENST00000450966 ANKRD11Q6UB99 2663 aaPredicted RBP8.74□□□□□ -1.01
USP40-208ENST00000450966 DNAH10OSP0CZ25 163 aa8.73□□□□□ -1.01
USP40-208ENST00000450966 MUC4Q99102 2169 aa8.73□□□□□ -1.01
USP40-208ENST00000450966 TYMSOSQ8TAI1 123 aa8.73□□□□□ -1.01
USP40-208ENST00000450966 FAM104AQ969W3 186 aa8.73□□□□□ -1.01
USP40-208ENST00000450966 A0A1B0GVX0 72 aa8.72□□□□□ -1.01
USP40-208ENST00000450966 A0A1W2PNM2 257 aa8.72□□□□□ -1.01
USP40-208ENST00000450966 K7EIL1 84 aa8.72□□□□□ -1.01
USP40-208ENST00000450966 IGLV5-48A0A075B6I7 105 aa8.71□□□□□ -1.02
USP40-208ENST00000450966 PRR26Q8N8Z3 221 aa8.71□□□□□ -1.02
USP40-208ENST00000450966 IGLV1-50A0A075B6I6 118 aa8.69□□□□□ -1.02
USP40-208ENST00000450966 J3QL48 77 aa8.69□□□□□ -1.02
USP40-208ENST00000450966 APLNQ9ULZ1 77 aa8.69□□□□□ -1.02
USP40-208ENST00000450966 KRTAP16-1A8MUX0 517 aa8.67□□□□□ -1.02
USP40-208ENST00000450966 SPINK7P58062 85 aa8.67□□□□□ -1.02
USP40-208ENST00000450966 PCSK5Q92824 1860 aa8.67□□□□□ -1.02
USP40-208ENST00000450966 CEP295Q9C0D2 2601 aa8.66□□□□□ -1.02
USP40-208ENST00000450966 COL27A1Q8IZC6 1860 aaPredicted RBP8.66□□□□□ -1.02
USP40-208ENST00000450966 USP9YO00507 2555 aaPredicted RBP8.66□□□□□ -1.02
USP40-208ENST00000450966 SETD2Q9BYW2 2564 aaPredicted RBP8.65□□□□□ -1.02
USP40-208ENST00000450966 DSCR10P59022 87 aa8.65□□□□□ -1.03
USP40-208ENST00000450966 WDR87Q6ZQQ6 2873 aa8.65□□□□□ -1.03
USP40-208ENST00000450966 SRCAPQ6ZRS2 3230 aa8.64□□□□□ -1.03
USP40-208ENST00000450966 PKD1L2Q7Z442 2459 aa8.64□□□□□ -1.03
USP40-208ENST00000450966 CHTF8P0CG12 524 aa8.63□□□□□ -1.03
USP40-208ENST00000450966 A6NN06 94 aa8.63□□□□□ -1.03
USP40-208ENST00000450966 KRTAP10-11P60412 298 aa8.62□□□□□ -1.03
USP40-208ENST00000450966 KRTAP1-3Q8IUG1 177 aa8.62□□□□□ -1.03
USP40-208ENST00000450966 FASNP49327 2511 aaKnown RBP8.61□□□□□ -1.03
USP40-208ENST00000450966 SPRR4Q96PI1 79 aa8.61□□□□□ -1.03
USP40-208ENST00000450966 C15orf56Q8N910 161 aa8.61□□□□□ -1.03
USP40-208ENST00000450966 Q96NJ1 140 aa8.59□□□□□ -1.03
USP40-208ENST00000450966 CSNK1G2-AS1Q8NCQ2 148 aa8.59□□□□□ -1.03
USP40-208ENST00000450966 PLA2G2DQ9UNK4 145 aa8.59□□□□□ -1.03
USP40-208ENST00000450966 SPTBN4Q9H254 2564 aa8.59□□□□□ -1.03
USP40-208ENST00000450966 KRTAP1-1Q07627 177 aa8.56□□□□□ -1.04
USP40-208ENST00000450966 HRES1P13985 223 aa8.55□□□□□ -1.04
USP40-208ENST00000450966 LINC00612Q8N6U2 182 aa8.54□□□□□ -1.04
USP40-208ENST00000450966 MTORP42345 2549 aa8.54□□□□□ -1.04
USP40-208ENST00000450966 A0A1B0GU33 70 aa8.53□□□□□ -1.04
USP40-208ENST00000450966 KRTAP10-3P60369 221 aa8.52□□□□□ -1.05
USP40-208ENST00000450966 PRR34Q9NV39 138 aa8.51□□□□□ -1.05
USP40-208ENST00000450966 COX6B2Q6YFQ2 88 aa8.51□□□□□ -1.05
USP40-208ENST00000450966 FAM168BA1KXE4 195 aa8.51□□□□□ -1.05
USP40-208ENST00000450966 TLX1NBP0CAT3 122 aa8.51□□□□□ -1.05
USP40-208ENST00000450966 F8P00451 2351 aa8.51□□□□□ -1.05
USP40-208ENST00000450966 ZNF575Q86XF7 245 aa8.5□□□□□ -1.05
USP40-208ENST00000450966 A0A087WTM6 91 aa8.49□□□□□ -1.05
USP40-208ENST00000450966 A0A0G2JQZ4 141 aa8.48□□□□□ -1.05
USP40-208ENST00000450966 A0A1W2PNN7 141 aa8.48□□□□□ -1.05
USP40-208ENST00000450966 ANKRD17O75179 2603 aaKnown RBP8.47□□□□□ -1.05
USP40-208ENST00000450966 CENPFP49454 3210 aa8.47□□□□□ -1.05
USP40-208ENST00000450966 LINC00304Q8N9R0 145 aa8.46□□□□□ -1.05
USP40-208ENST00000450966 CNBPP62633 177 aaKnown RBP8.46□□□□□ -1.06
USP40-208ENST00000450966 ZNF861PO60384 105 aa8.44□□□□□ -1.06
USP40-208ENST00000450966 A0A0D9SG42 100 aa8.43□□□□□ -1.06
USP40-208ENST00000450966 POLQO75417 2590 aa8.42□□□□□ -1.06
USP40-208ENST00000450966 A0A087X002 238 aa8.42□□□□□ -1.06
USP40-208ENST00000450966 ZCCHC13Q8WW36 166 aaKnown RBP8.4□□□□□ -1.06
USP40-208ENST00000450966 ACANP16112 2415 aa8.4□□□□□ -1.07
USP40-208ENST00000450966 IGLV5-37A0A075B6J1 123 aa8.4□□□□□ -1.07
USP40-208ENST00000450966 MMP24-AS1A0A0U1RRL7 71 aa8.4□□□□□ -1.07
USP40-208ENST00000450966 EPG5Q9HCE0 2579 aa8.39□□□□□ -1.07
USP40-208ENST00000450966 GIG44P09565 113 aaPredicted RBP8.38□□□□□ -1.07
USP40-208ENST00000450966 SPATA8Q6RVD6 105 aa8.37□□□□□ -1.07
USP40-208ENST00000450966 ROMO1P60602 79 aa8.36□□□□□ -1.07
USP40-208ENST00000450966 Q8N1X5 172 aa8.35□□□□□ -1.07
USP40-208ENST00000450966 KRTAP25-1Q3LHN0 102 aa8.34□□□□□ -1.07
USP40-208ENST00000450966 GOLGB1Q14789 3259 aaKnown RBP8.34□□□□□ -1.07
USP40-208ENST00000450966 IGLV7-43P04211 117 aa8.34□□□□□ -1.07
USP40-208ENST00000450966 SMR3BP02814 79 aaPredicted RBP8.33□□□□□ -1.08
USP40-208ENST00000450966 C9orf92A6NGG3 77 aa8.33□□□□□ -1.08
USP40-208ENST00000450966 CASC10Q5T4H9 136 aa8.32□□□□□ -1.08
USP40-208ENST00000450966 FLNBO75369 2602 aaKnown RBP8.3□□□□□ -1.08
USP40-208ENST00000450966 LINC00483Q53H64 154 aa8.3□□□□□ -1.08
USP40-208ENST00000450966 PSORS1C2Q9UIG4 136 aa8.27□□□□□ -1.09
USP40-208ENST00000450966 LCE6AA0A183 80 aa8.26□□□□□ -1.09
USP40-208ENST00000450966 SEC61BP60468 96 aaKnown RBP8.25□□□□□ -1.09
USP40-208ENST00000450966 ADM2Q7Z4H4 148 aa8.23□□□□□ -1.09
USP40-208ENST00000450966 LINC00472Q9H8W2 130 aa8.23□□□□□ -1.09
USP40-208ENST00000450966 ANAPC11Q9NYG5 84 aa8.23□□□□□ -1.09
USP40-208ENST00000450966 NDUFAF8A1L188 74 aa8.21□□□□□ -1.09
USP40-208ENST00000450966 RPL37P61927 97 aaKnown RBP8.21□□□□□ -1.1
USP40-208ENST00000450966 CAMK2N1Q7Z7J9 78 aa8.2□□□□□ -1.1
USP40-208ENST00000450966 A8MU10 97 aa8.19□□□□□ -1.1
USP40-208ENST00000450966 Q6ZR54 194 aa8.19□□□□□ -1.1
USP40-208ENST00000450966 CR1P17927 2039 aa8.19□□□□□ -1.1
USP40-208ENST00000450966 KRTAP21-3Q3LHN1 58 aa8.19□□□□□ -1.1
USP40-208ENST00000450966 SPRR1AP35321 89 aa8.17□□□□□ -1.1
USP40-208ENST00000450966 Q5W150 140 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms