RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 FAM236BA0A1B0GV22 79 aa8.35□□□□□ -1.07
COL28A1-204ENST00000444268 APLNQ9ULZ1 77 aa8.35□□□□□ -1.07
COL28A1-204ENST00000444268 DYNC2H1Q8NCM8 4307 aaKnown RBP8.34□□□□□ -1.07
COL28A1-204ENST00000444268 Q6ZQT0 140 aa8.34□□□□□ -1.07
COL28A1-204ENST00000444268 UBL5Q9BZL1 73 aa8.34□□□□□ -1.07
COL28A1-204ENST00000444268 STARD9Q9P2P6 4700 aa8.33□□□□□ -1.08
COL28A1-204ENST00000444268 NUPR2A6NF83 97 aa8.33□□□□□ -1.08
COL28A1-204ENST00000444268 LOC107984640A0A0U1RRK4 108 aa8.33□□□□□ -1.08
COL28A1-204ENST00000444268 PRYO14603 147 aa8.32□□□□□ -1.08
COL28A1-204ENST00000444268 C7orf33Q8WU49 177 aa8.32□□□□□ -1.08
COL28A1-204ENST00000444268 LYSTQ99698 3801 aa8.31□□□□□ -1.08
COL28A1-204ENST00000444268 SERTAD4-AS1Q5TG53 156 aa8.3□□□□□ -1.08
COL28A1-204ENST00000444268 UBE2DNLQ8IWF7 75 aa8.3□□□□□ -1.08
COL28A1-204ENST00000444268 WWC2-AS2Q96NR7 200 aa8.3□□□□□ -1.08
COL28A1-204ENST00000444268 DHRS4-AS1Q9P1J3 65 aa8.3□□□□□ -1.08
COL28A1-204ENST00000444268 ATOX1O00244 68 aa8.29□□□□□ -1.08
COL28A1-204ENST00000444268 CASC10Q5T4H9 136 aa8.29□□□□□ -1.08
COL28A1-204ENST00000444268 PLECQ15149 4684 aaKnown RBP8.29□□□□□ -1.08
COL28A1-204ENST00000444268 TRBV7-4A0A0J9YYF1 115 aa8.28□□□□□ -1.08
COL28A1-204ENST00000444268 HIST1H4AP62805 103 aaKnown RBP8.28□□□□□ -1.08
COL28A1-204ENST00000444268 C14orf177Q52M58 125 aa8.28□□□□□ -1.08
COL28A1-204ENST00000444268 IGLV1-50A0A075B6I6 118 aa8.27□□□□□ -1.08
COL28A1-204ENST00000444268 IGKV3D-7A0A0C4DH55 119 aa8.27□□□□□ -1.08
COL28A1-204ENST00000444268 PSCAO43653 123 aa8.27□□□□□ -1.09
COL28A1-204ENST00000444268 TENM2Q9NT68 2774 aa8.26□□□□□ -1.09
COL28A1-204ENST00000444268 ETDCA0A1B0GVM5 59 aa8.26□□□□□ -1.09
COL28A1-204ENST00000444268 SPRR1AP35321 89 aa8.26□□□□□ -1.09
COL28A1-204ENST00000444268 CNBPP62633 177 aaKnown RBP8.26□□□□□ -1.09
COL28A1-204ENST00000444268 Q6ZRX8 168 aa8.26□□□□□ -1.09
COL28A1-204ENST00000444268 PKIGQ9Y2B9 76 aa8.26□□□□□ -1.09
COL28A1-204ENST00000444268 MRPL55Q7Z7F7 128 aaKnown RBP8.25□□□□□ -1.09
COL28A1-204ENST00000444268 B5MCH6 92 aa8.23□□□□□ -1.09
COL28A1-204ENST00000444268 KRTAP4-16G5E9R7 235 aaPredicted RBP8.23□□□□□ -1.09
COL28A1-204ENST00000444268 CCDC179H3BU77 68 aa8.23□□□□□ -1.09
COL28A1-204ENST00000444268 FAM168BA1KXE4 195 aa8.22□□□□□ -1.09
COL28A1-204ENST00000444268 UQCRQO14949 82 aa8.22□□□□□ -1.09
COL28A1-204ENST00000444268 RPL37AP8A6NKH3 93 aa8.22□□□□□ -1.09
COL28A1-204ENST00000444268 C16orf90A8MZG2 172 aa8.22□□□□□ -1.09
COL28A1-204ENST00000444268 FAM19A5Q7Z5A7 132 aaPredicted RBP8.22□□□□□ -1.09
COL28A1-204ENST00000444268 KRTAP1-5Q9BYS1 174 aa8.22□□□□□ -1.09
COL28A1-204ENST00000444268 CXCL6P80162 114 aa8.21□□□□□ -1.1
COL28A1-204ENST00000444268 Q6ZVQ6 151 aa8.21□□□□□ -1.1
COL28A1-204ENST00000444268 DNAH1Q9P2D7 4330 aa8.21□□□□□ -1.1
COL28A1-204ENST00000444268 A0A1B0GW54 56 aa8.2□□□□□ -1.1
COL28A1-204ENST00000444268 C3orf22Q8N5N4 141 aa8.2□□□□□ -1.1
COL28A1-204ENST00000444268 COX7CP15954 63 aa8.19□□□□□ -1.1
COL28A1-204ENST00000444268 LINC01547P58512 204 aaPredicted RBP8.19□□□□□ -1.1
COL28A1-204ENST00000444268 REG3GQ6UW15 175 aa8.19□□□□□ -1.1
COL28A1-204ENST00000444268 KRTAP7-1Q8IUC3 87 aa8.19□□□□□ -1.1
COL28A1-204ENST00000444268 IGLV5-48A0A075B6I7 105 aa8.18□□□□□ -1.1
COL28A1-204ENST00000444268 Q8N377 158 aa8.18□□□□□ -1.1
COL28A1-204ENST00000444268 A0A087WVE0 104 aa8.17□□□□□ -1.1
COL28A1-204ENST00000444268 C3orf84H3BNL1 204 aa8.17□□□□□ -1.1
COL28A1-204ENST00000444268 HAMPP81172 84 aa8.17□□□□□ -1.1
COL28A1-204ENST00000444268 Q9BRP9 147 aa8.17□□□□□ -1.1
COL28A1-204ENST00000444268 A0A096LNI7 61 aa8.17□□□□□ -1.1
COL28A1-204ENST00000444268 M0R2N4 97 aa8.17□□□□□ -1.1
COL28A1-204ENST00000444268 BCE1O60756 84 aa8.17□□□□□ -1.1
COL28A1-204ENST00000444268 DEFB105AQ8NG35 78 aa8.17□□□□□ -1.1
COL28A1-204ENST00000444268 VPS13DQ5THJ4 4388 aa8.16□□□□□ -1.1
COL28A1-204ENST00000444268 NBDYA0A0U1RRE5 68 aa8.16□□□□□ -1.1
COL28A1-204ENST00000444268 UBE2BP63146 152 aa8.16□□□□□ -1.1
COL28A1-204ENST00000444268 C9orf153Q5TBE3 101 aa8.16□□□□□ -1.1
COL28A1-204ENST00000444268 SERP2Q8N6R1 65 aa8.16□□□□□ -1.1
COL28A1-204ENST00000444268 LY6G6CO95867 125 aa8.15□□□□□ -1.1
COL28A1-204ENST00000444268 LINC00474Q9P2X8 69 aa8.15□□□□□ -1.11
COL28A1-204ENST00000444268 FUSP35637 526 aaKnown RBP eCLIP8.14□□□□□ -1.11
COL28A1-204ENST00000444268 IGKV2-24A0A0C4DH68 120 aa8.13□□□□□ -1.11
COL28A1-204ENST00000444268 FAM19A1Q7Z5A9 133 aa8.13□□□□□ -1.11
COL28A1-204ENST00000444268 LINC00476Q8WZB0 136 aa8.13□□□□□ -1.11
COL28A1-204ENST00000444268 CRYGAP11844 174 aa8.12□□□□□ -1.11
COL28A1-204ENST00000444268 SMIM20Q8N5G0 67 aa8.12□□□□□ -1.11
COL28A1-204ENST00000444268 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-204ENST00000444268 C9orf163Q8N9P6 203 aa8.12□□□□□ -1.11
COL28A1-204ENST00000444268 KMT2AQ03164 3969 aa8.11□□□□□ -1.11
COL28A1-204ENST00000444268 TNP2Q05952 138 aa8.11□□□□□ -1.11
COL28A1-204ENST00000444268 ALMS1Q8TCU4 4167 aa8.1□□□□□ -1.11
COL28A1-204ENST00000444268 LRCOL1A6NCL2 159 aa8.1□□□□□ -1.11
COL28A1-204ENST00000444268 F8WEM9 126 aa8.1□□□□□ -1.11
COL28A1-204ENST00000444268 NREPQ16612 68 aa8.1□□□□□ -1.11
COL28A1-204ENST00000444268 A0A1W2PNN7 141 aa8.1□□□□□ -1.11
COL28A1-204ENST00000444268 C1orf137Q5JT78 98 aa8.1□□□□□ -1.11
COL28A1-204ENST00000444268 H0Y9J4 135 aa8.09□□□□□ -1.11
COL28A1-204ENST00000444268 ST20-AS1Q8NBB2 130 aa8.09□□□□□ -1.11
COL28A1-204ENST00000444268 SS18L2Q9UHA2 77 aa8.09□□□□□ -1.11
COL28A1-204ENST00000444268 DNAH10Q8IVF4 4471 aa8.08□□□□□ -1.12
COL28A1-204ENST00000444268 ERC2-IT1O76042 136 aa8.07□□□□□ -1.12
COL28A1-204ENST00000444268 Q6ZRN7 208 aaPredicted RBP8.07□□□□□ -1.12
COL28A1-204ENST00000444268 Q8NBF4 154 aa8.07□□□□□ -1.12
COL28A1-204ENST00000444268 Q6ZR54 194 aa8.07□□□□□ -1.12
COL28A1-204ENST00000444268 BPY2O14599 106 aa8.05□□□□□ -1.12
COL28A1-204ENST00000444268 SPRR4Q96PI1 79 aa8.05□□□□□ -1.12
COL28A1-204ENST00000444268 TRAV7A0A075B6U4 112 aa8.05□□□□□ -1.12
COL28A1-204ENST00000444268 HYDINQ4G0P3 5121 aa8.04□□□□□ -1.12
COL28A1-204ENST00000444268 A0A1W2PNM2 257 aa8.03□□□□□ -1.12
COL28A1-204ENST00000444268 PRLHP81277 87 aa8.03□□□□□ -1.12
COL28A1-204ENST00000444268 CHTF8P0CG12 524 aa8.02□□□□□ -1.13
COL28A1-204ENST00000444268 SCXQ7RTU7 201 aa8.02□□□□□ -1.13
COL28A1-204ENST00000444268 SMIM29Q86T20 159 aa8.02□□□□□ -1.13
COL28A1-204ENST00000444268 HIGD2AQ9BW72 106 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms