RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 RPL13AP40429 203 aaKnown RBP6.87□□□□□ -1.31
COL28A1-203ENST00000435823 NPC2P61916 151 aa6.87□□□□□ -1.31
COL28A1-203ENST00000435823 SNRPEP62304 92 aaKnown RBP6.87□□□□□ -1.31
COL28A1-203ENST00000435823 ADAMTSL4-AS1Q5T5F5 129 aa6.87□□□□□ -1.31
COL28A1-203ENST00000435823 TRBV10-3A0A0K0K1G6 114 aa6.86□□□□□ -1.31
COL28A1-203ENST00000435823 A6NJY4 79 aa6.86□□□□□ -1.31
COL28A1-203ENST00000435823 ANKRD39Q53RE8 183 aa6.86□□□□□ -1.31
COL28A1-203ENST00000435823 SCGB1D4Q6XE38 83 aa6.86□□□□□ -1.31
COL28A1-203ENST00000435823 TTTY13Q9BZ97 58 aa6.86□□□□□ -1.31
COL28A1-203ENST00000435823 KCNQ1DNQ9H478 68 aa6.86□□□□□ -1.31
COL28A1-203ENST00000435823 DDTP30046 118 aa6.85□□□□□ -1.31
COL28A1-203ENST00000435823 S100A7L2Q5SY68 101 aa6.85□□□□□ -1.31
COL28A1-203ENST00000435823 SOSTDC1Q6X4U4 206 aa6.85□□□□□ -1.31
COL28A1-203ENST00000435823 LITAFQ99732 161 aa6.85□□□□□ -1.31
COL28A1-203ENST00000435823 TNXBP22105 4242 aa6.85□□□□□ -1.31
COL28A1-203ENST00000435823 ETDCA0A1B0GVM5 59 aa6.84□□□□□ -1.31
COL28A1-203ENST00000435823 HSBP1L1C9JCN9 74 aa6.84□□□□□ -1.31
COL28A1-203ENST00000435823 LINC00337Q8N6G1 96 aa6.84□□□□□ -1.31
COL28A1-203ENST00000435823 LINC00308Q8TCZ7 52 aa6.84□□□□□ -1.31
COL28A1-203ENST00000435823 HIGD2AQ9BW72 106 aa6.84□□□□□ -1.31
COL28A1-203ENST00000435823 SPANXCQ9NY87 97 aa6.84□□□□□ -1.31
COL28A1-203ENST00000435823 CRYGAP11844 174 aa6.83□□□□□ -1.32
COL28A1-203ENST00000435823 SPRR1AP35321 89 aa6.83□□□□□ -1.32
COL28A1-203ENST00000435823 COPS9Q8WXC6 57 aa6.83□□□□□ -1.32
COL28A1-203ENST00000435823 C5orf52A6NGY3 159 aa6.82□□□□□ -1.32
COL28A1-203ENST00000435823 EIF4EBP3O60516 100 aaPredicted RBP6.82□□□□□ -1.32
COL28A1-203ENST00000435823 CBY1Q9Y3M2 126 aa6.82□□□□□ -1.32
COL28A1-203ENST00000435823 IGLV6-57P01721 117 aa6.81□□□□□ -1.32
COL28A1-203ENST00000435823 PCP2Q8IVA1 136 aa6.81□□□□□ -1.32
COL28A1-203ENST00000435823 SPANXDQ9BXN6 97 aa6.81□□□□□ -1.32
COL28A1-203ENST00000435823 TRAV23DV6A0A075B6W5 121 aa6.8□□□□□ -1.32
COL28A1-203ENST00000435823 SCGB1D1O95968 90 aa6.8□□□□□ -1.32
COL28A1-203ENST00000435823 KRTAP19-4Q3LI73 84 aa6.8□□□□□ -1.32
COL28A1-203ENST00000435823 FAM229BQ4G0N7 80 aa6.8□□□□□ -1.32
COL28A1-203ENST00000435823 ZNF706Q9Y5V0 76 aaPredicted RBP6.8□□□□□ -1.32
COL28A1-203ENST00000435823 HMCN2Q8NDA2 5059 aa6.8□□□□□ -1.32
COL28A1-203ENST00000435823 A0A087X002 238 aa6.79□□□□□ -1.32
COL28A1-203ENST00000435823 KRTAP4-16G5E9R7 235 aaPredicted RBP6.79□□□□□ -1.32
COL28A1-203ENST00000435823 IFITM1P13164 125 aa6.79□□□□□ -1.32
COL28A1-203ENST00000435823 Q6ZVH6 145 aa6.79□□□□□ -1.32
COL28A1-203ENST00000435823 LINC00518Q8N0U6 118 aa6.79□□□□□ -1.32
COL28A1-203ENST00000435823 OR13C6PQ8NH95 151 aa6.79□□□□□ -1.32
COL28A1-203ENST00000435823 TYMSOSQ8TAI1 123 aa6.79□□□□□ -1.32
COL28A1-203ENST00000435823 ANAPC11Q9NYG5 84 aa6.79□□□□□ -1.32
COL28A1-203ENST00000435823 B5MCH6 92 aa6.78□□□□□ -1.32
COL28A1-203ENST00000435823 HINT1P49773 126 aaPredicted RBP6.78□□□□□ -1.32
COL28A1-203ENST00000435823 SMCR5Q8TEV8 140 aa6.78□□□□□ -1.32
COL28A1-203ENST00000435823 ZNF73O43830 326 aaPredicted RBP6.77□□□□□ -1.33
COL28A1-203ENST00000435823 JOSD1Q15040 202 aaPredicted RBP6.77□□□□□ -1.33
COL28A1-203ENST00000435823 PPDPFQ9H3Y8 114 aa6.77□□□□□ -1.33
COL28A1-203ENST00000435823 Q6ZRX8 168 aa6.76□□□□□ -1.33
COL28A1-203ENST00000435823 SPRR4Q96PI1 79 aa6.76□□□□□ -1.33
COL28A1-203ENST00000435823 MUSTN1Q8IVN3 82 aa6.75□□□□□ -1.33
COL28A1-203ENST00000435823 KRTAP9-3Q9BYQ3 159 aa6.75□□□□□ -1.33
COL28A1-203ENST00000435823 KRTAP13-2Q52LG2 175 aa6.74□□□□□ -1.33
COL28A1-203ENST00000435823 A6NDN8 102 aa6.72□□□□□ -1.33
COL28A1-203ENST00000435823 Q9BRP9 147 aa6.72□□□□□ -1.33
COL28A1-203ENST00000435823 TRAV13-2A0A0B4J235 113 aa6.71□□□□□ -1.34
COL28A1-203ENST00000435823 ERC2-IT1O76042 136 aa6.71□□□□□ -1.34
COL28A1-203ENST00000435823 TSPAN13O95857 204 aa6.71□□□□□ -1.34
COL28A1-203ENST00000435823 GAGE2AQ6NT46 116 aa6.71□□□□□ -1.34
COL28A1-203ENST00000435823 LINC00304Q8N9R0 145 aa6.71□□□□□ -1.34
COL28A1-203ENST00000435823 COX8AP10176 69 aa6.7□□□□□ -1.34
COL28A1-203ENST00000435823 C6orf99Q4VX62 202 aa6.7□□□□□ -1.34
COL28A1-203ENST00000435823 LINC00483Q53H64 154 aa6.7□□□□□ -1.34
COL28A1-203ENST00000435823 C3orf22Q8N5N4 141 aa6.7□□□□□ -1.34
COL28A1-203ENST00000435823 DHRS4-AS1Q9P1J3 65 aa6.7□□□□□ -1.34
COL28A1-203ENST00000435823 DLEU1O43261 78 aa6.69□□□□□ -1.34
COL28A1-203ENST00000435823 COX7BP24311 80 aa6.69□□□□□ -1.34
COL28A1-203ENST00000435823 VAMP8Q9BV40 100 aa6.69□□□□□ -1.34
COL28A1-203ENST00000435823 PAM16Q9Y3D7 125 aa6.69□□□□□ -1.34
COL28A1-203ENST00000435823 ELOF1P60002 83 aaKnown RBP6.68□□□□□ -1.34
COL28A1-203ENST00000435823 SPATA45Q537H7 98 aa6.68□□□□□ -1.34
COL28A1-203ENST00000435823 HIST1H4GQ99525 98 aa6.68□□□□□ -1.34
COL28A1-203ENST00000435823 TRBV7-6A0A0J9YX20 115 aa6.67□□□□□ -1.34
COL28A1-203ENST00000435823 TMA7Q9Y2S6 64 aaKnown RBP6.67□□□□□ -1.34
COL28A1-203ENST00000435823 A0A1B0GWB2 263 aa6.66□□□□□ -1.34
COL28A1-203ENST00000435823 A4D1N5 150 aa6.66□□□□□ -1.34
COL28A1-203ENST00000435823 CTAG1AP78358 180 aa6.66□□□□□ -1.34
COL28A1-203ENST00000435823 PRR4Q16378 134 aa6.66□□□□□ -1.34
COL28A1-203ENST00000435823 SPAG11AQ6PDA7 123 aa6.66□□□□□ -1.34
COL28A1-203ENST00000435823 C14orf144Q96I85 54 aa6.66□□□□□ -1.34
COL28A1-203ENST00000435823 IGLV9-49A0A0B4J1Y8 123 aa6.65□□□□□ -1.34
COL28A1-203ENST00000435823 SLC25A34Q6PIV7 304 aa6.65□□□□□ -1.34
COL28A1-203ENST00000435823 ST20-AS1Q8NBB2 130 aa6.65□□□□□ -1.34
COL28A1-203ENST00000435823 MOBPQ13875 183 aa6.64□□□□□ -1.35
COL28A1-203ENST00000435823 Q8NBF4 154 aa6.64□□□□□ -1.35
COL28A1-203ENST00000435823 SMIM11BQ8TCY0 68 aa6.64□□□□□ -1.35
COL28A1-203ENST00000435823 VAMP3Q15836 100 aa6.63□□□□□ -1.35
COL28A1-203ENST00000435823 SSBP3-AS1Q7Z2R9 100 aa6.63□□□□□ -1.35
COL28A1-203ENST00000435823 HIGD1BQ9P298 99 aa6.63□□□□□ -1.35
COL28A1-203ENST00000435823 UBR4Q5T4S7 5183 aa6.63□□□□□ -1.35
COL28A1-203ENST00000435823 TAL2Q16559 108 aa6.62□□□□□ -1.35
COL28A1-203ENST00000435823 C9orf153Q5TBE3 101 aa6.62□□□□□ -1.35
COL28A1-203ENST00000435823 NHP2Q9NX24 153 aaKnown RBP6.62□□□□□ -1.35
COL28A1-203ENST00000435823 SPRR1BP22528 89 aa6.61□□□□□ -1.35
COL28A1-203ENST00000435823 PYY3Q5JQD4 70 aa6.61□□□□□ -1.35
COL28A1-203ENST00000435823 C12orf57Q99622 126 aa6.61□□□□□ -1.35
COL28A1-203ENST00000435823 SLC25A20O43772 301 aa6.6□□□□□ -1.35
COL28A1-203ENST00000435823 LAMTOR3Q9UHA4 124 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms