RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SPINK6Q6UWN8 80 aa7.55□□□□□ -1.2
USP40-205ENST00000430158 SCGB1D4Q6XE38 83 aa7.55□□□□□ -1.2
USP40-205ENST00000430158 BCE1O60756 84 aa7.54□□□□□ -1.2
USP40-205ENST00000430158 SPATA45Q537H7 98 aa7.54□□□□□ -1.2
USP40-205ENST00000430158 Q6ZVH6 145 aa7.54□□□□□ -1.2
USP40-205ENST00000430158 KCNQ1DNQ9H478 68 aa7.54□□□□□ -1.2
USP40-205ENST00000430158 SPANXB1Q9NS25 103 aaPredicted RBP7.54□□□□□ -1.2
USP40-205ENST00000430158 PAM16Q9Y3D7 125 aa7.54□□□□□ -1.2
USP40-205ENST00000430158 TRBV10-3A0A0K0K1G6 114 aa7.53□□□□□ -1.2
USP40-205ENST00000430158 KRTAP4-16G5E9R7 235 aaPredicted RBP7.53□□□□□ -1.2
USP40-205ENST00000430158 IGLV6-57P01721 117 aa7.53□□□□□ -1.2
USP40-205ENST00000430158 IFITM1P13164 125 aa7.53□□□□□ -1.2
USP40-205ENST00000430158 SPRR1AP35321 89 aa7.53□□□□□ -1.2
USP40-205ENST00000430158 VAMP8Q9BV40 100 aa7.53□□□□□ -1.2
USP40-205ENST00000430158 TMEM126AQ9H061 195 aa7.53□□□□□ -1.2
USP40-205ENST00000430158 TNXBP22105 4242 aa7.53□□□□□ -1.2
USP40-205ENST00000430158 MUSTN1Q8IVN3 82 aa7.52□□□□□ -1.21
USP40-205ENST00000430158 C14orf144Q96I85 54 aa7.52□□□□□ -1.21
USP40-205ENST00000430158 MIEN1Q9BRT3 115 aa7.52□□□□□ -1.21
USP40-205ENST00000430158 KRTAP29-1A8MX34 341 aaPredicted RBP7.51□□□□□ -1.21
USP40-205ENST00000430158 ZNF861PO60384 105 aa7.51□□□□□ -1.21
USP40-205ENST00000430158 REG3GQ6UW15 175 aa7.51□□□□□ -1.21
USP40-205ENST00000430158 PRYO14603 147 aa7.5□□□□□ -1.21
USP40-205ENST00000430158 C2orf91Q6ZV80 131 aa7.5□□□□□ -1.21
USP40-205ENST00000430158 LINC00337Q8N6G1 96 aa7.5□□□□□ -1.21
USP40-205ENST00000430158 H0Y9J4 135 aa7.49□□□□□ -1.21
USP40-205ENST00000430158 OXTP01178 125 aa7.49□□□□□ -1.21
USP40-205ENST00000430158 DDTP30046 118 aa7.49□□□□□ -1.21
USP40-205ENST00000430158 HIGD1BQ9P298 99 aa7.49□□□□□ -1.21
USP40-205ENST00000430158 LOC105371267A0A1B0GV96 52 aa7.48□□□□□ -1.21
USP40-205ENST00000430158 KRTAP1-4P0C5Y4 121 aa7.48□□□□□ -1.21
USP40-205ENST00000430158 MT1HL1P0DM35 61 aa7.48□□□□□ -1.21
USP40-205ENST00000430158 SLC25A34Q6PIV7 304 aa7.48□□□□□ -1.21
USP40-205ENST00000430158 DIRC1Q969H9 104 aa7.48□□□□□ -1.21
USP40-205ENST00000430158 LINC00518Q8N0U6 118 aa7.47□□□□□ -1.21
USP40-205ENST00000430158 COPS9Q8WXC6 57 aa7.47□□□□□ -1.21
USP40-205ENST00000430158 LINC01600Q96MT4 127 aa7.47□□□□□ -1.21
USP40-205ENST00000430158 HERC1Q15751 4861 aa7.46□□□□□ -1.21
USP40-205ENST00000430158 RPL28P46779 137 aaKnown RBP7.46□□□□□ -1.22
USP40-205ENST00000430158 PRLHP81277 87 aa7.45□□□□□ -1.22
USP40-205ENST00000430158 KRTAP5-3Q6L8H2 238 aa7.45□□□□□ -1.22
USP40-205ENST00000430158 FAM19A1Q7Z5A9 133 aa7.45□□□□□ -1.22
USP40-205ENST00000430158 TRAV23DV6A0A075B6W5 121 aa7.44□□□□□ -1.22
USP40-205ENST00000430158 A4D1N5 150 aa7.44□□□□□ -1.22
USP40-205ENST00000430158 B5MCH6 92 aa7.44□□□□□ -1.22
USP40-205ENST00000430158 UBE2AP49459 152 aa7.44□□□□□ -1.22
USP40-205ENST00000430158 KRTAP10-8P60410 259 aa7.44□□□□□ -1.22
USP40-205ENST00000430158 S100A7L2Q5SY68 101 aa7.44□□□□□ -1.22
USP40-205ENST00000430158 ZNF73O43830 326 aaPredicted RBP7.42□□□□□ -1.22
USP40-205ENST00000430158 SMCR5Q8TEV8 140 aa7.42□□□□□ -1.22
USP40-205ENST00000430158 HIST1H4GQ99525 98 aa7.42□□□□□ -1.22
USP40-205ENST00000430158 SMIM6P0DI80 62 aa7.41□□□□□ -1.22
USP40-205ENST00000430158 TAL2Q16559 108 aa7.41□□□□□ -1.22
USP40-205ENST00000430158 OR13C6PQ8NH95 151 aa7.41□□□□□ -1.22
USP40-205ENST00000430158 Q9BRP9 147 aa7.41□□□□□ -1.22
USP40-205ENST00000430158 ETDCA0A1B0GVM5 59 aa7.4□□□□□ -1.22
USP40-205ENST00000430158 Q6ZRX8 168 aa7.4□□□□□ -1.22
USP40-205ENST00000430158 TRAV13-2A0A0B4J235 113 aa7.39□□□□□ -1.23
USP40-205ENST00000430158 ERC2-IT1O76042 136 aa7.39□□□□□ -1.23
USP40-205ENST00000430158 S100A12P80511 92 aa7.39□□□□□ -1.23
USP40-205ENST00000430158 CFC1BP0CG36 223 aa7.38□□□□□ -1.23
USP40-205ENST00000430158 CFC1P0CG37 223 aa7.38□□□□□ -1.23
USP40-205ENST00000430158 UQCR10Q9UDW1 63 aa7.38□□□□□ -1.23
USP40-205ENST00000430158 CBY1Q9Y3M2 126 aa7.38□□□□□ -1.23
USP40-205ENST00000430158 A6NDN8 102 aa7.37□□□□□ -1.23
USP40-205ENST00000430158 C6orf99Q4VX62 202 aa7.37□□□□□ -1.23
USP40-205ENST00000430158 CEND1Q8N111 149 aa7.37□□□□□ -1.23
USP40-205ENST00000430158 PRR26Q8N8Z3 221 aa7.37□□□□□ -1.23
USP40-205ENST00000430158 SMIM11BQ8TCY0 68 aa7.37□□□□□ -1.23
USP40-205ENST00000430158 HIGD2AQ9BW72 106 aa7.37□□□□□ -1.23
USP40-205ENST00000430158 ANAPC11Q9NYG5 84 aa7.37□□□□□ -1.23
USP40-205ENST00000430158 A0A087X002 238 aa7.36□□□□□ -1.23
USP40-205ENST00000430158 TRBV7-6A0A0J9YX20 115 aa7.36□□□□□ -1.23
USP40-205ENST00000430158 FXYD2P54710 66 aa7.36□□□□□ -1.23
USP40-205ENST00000430158 ELOF1P60002 83 aaKnown RBP7.36□□□□□ -1.23
USP40-205ENST00000430158 SPRR4Q96PI1 79 aa7.36□□□□□ -1.23
USP40-205ENST00000430158 C12orf57Q99622 126 aa7.36□□□□□ -1.23
USP40-205ENST00000430158 PRO1933Q9H354 126 aa7.35□□□□□ -1.23
USP40-205ENST00000430158 A0A0B4J2C4 111 aa7.34□□□□□ -1.23
USP40-205ENST00000430158 HSD52Q0P140 79 aa7.34□□□□□ -1.23
USP40-205ENST00000430158 FAM229BQ4G0N7 80 aa7.34□□□□□ -1.23
USP40-205ENST00000430158 KRTAP13-2Q52LG2 175 aa7.34□□□□□ -1.23
USP40-205ENST00000430158 COX7BP24311 80 aa7.33□□□□□ -1.24
USP40-205ENST00000430158 LINC00483Q53H64 154 aa7.33□□□□□ -1.24
USP40-205ENST00000430158 RPL13AP40429 203 aaKnown RBP7.32□□□□□ -1.24
USP40-205ENST00000430158 A0A1B0GWB2 263 aa7.31□□□□□ -1.24
USP40-205ENST00000430158 HINT1P49773 126 aaPredicted RBP7.31□□□□□ -1.24
USP40-205ENST00000430158 DHRS4-AS1Q9P1J3 65 aa7.31□□□□□ -1.24
USP40-205ENST00000430158 CRYGAP11844 174 aa7.3□□□□□ -1.24
USP40-205ENST00000430158 ST20-AS1Q8NBB2 130 aa7.3□□□□□ -1.24
USP40-205ENST00000430158 BVES-AS1Q5T3Y7 98 aa7.29□□□□□ -1.24
USP40-205ENST00000430158 ZNF706Q9Y5V0 76 aaPredicted RBP7.29□□□□□ -1.24
USP40-205ENST00000430158 SPRR1BP22528 89 aa7.28□□□□□ -1.24
USP40-205ENST00000430158 PRO1854Q9UHT4 67 aa7.28□□□□□ -1.24
USP40-205ENST00000430158 TMEM238LA0A1B0GVL6 79 aa7.27□□□□□ -1.25
USP40-205ENST00000430158 LINC01547P58512 204 aaPredicted RBP7.27□□□□□ -1.25
USP40-205ENST00000430158 GAGE2AQ6NT46 116 aa7.27□□□□□ -1.25
USP40-205ENST00000430158 LINC00575Q6W349 94 aa7.27□□□□□ -1.25
USP40-205ENST00000430158 C3orf22Q8N5N4 141 aa7.27□□□□□ -1.25
USP40-205ENST00000430158 RAB37Q96AX2 223 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms