RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 BLCAPP62952 87 aa3.21□□□□□ -1.9
VPS13A-207ENST00000419472 MGAM2Q2M2H8 2515 aa3.21□□□□□ -1.9
VPS13A-207ENST00000419472 VWFP04275 2813 aa3.21□□□□□ -1.9
VPS13A-207ENST00000419472 ODF3BA8MYP8 253 aa3.21□□□□□ -1.9
VPS13A-207ENST00000419472 Q1T7F1 81 aa3.21□□□□□ -1.9
VPS13A-207ENST00000419472 ESRGQ1W209 222 aa3.21□□□□□ -1.9
VPS13A-207ENST00000419472 SOSTDC1Q6X4U4 206 aa3.21□□□□□ -1.9
VPS13A-207ENST00000419472 IGKV2-40A0A087WW87 121 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-207ENST00000419472 IGKV3D-20A0A0C4DH25 116 aa3.2□□□□□ -1.9
VPS13A-207ENST00000419472 PPP1R17O96001 155 aa3.2□□□□□ -1.9
VPS13A-207ENST00000419472 IGKV2D-40P01614 121 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-207ENST00000419472 RNASE4P34096 147 aaKnown RBP3.2□□□□□ -1.9
VPS13A-207ENST00000419472 I3L2K1 104 aa3.2□□□□□ -1.9
VPS13A-207ENST00000419472 K7EIM0 57 aa3.2□□□□□ -1.9
VPS13A-207ENST00000419472 M0R378 163 aa3.2□□□□□ -1.9
VPS13A-207ENST00000419472 IGKV1-17P01599 117 aa3.2□□□□□ -1.9
VPS13A-207ENST00000419472 SNURFQ9Y675 71 aa3.2□□□□□ -1.9
VPS13A-207ENST00000419472 LECT2O14960 151 aa3.19□□□□□ -1.9
VPS13A-207ENST00000419472 IGHV1-69P01742 117 aa3.19□□□□□ -1.9
VPS13A-207ENST00000419472 MIFP14174 115 aa3.19□□□□□ -1.9
VPS13A-207ENST00000419472 RPL39LQ96EH5 51 aaKnown RBP3.19□□□□□ -1.9
VPS13A-207ENST00000419472 C14orf132Q9NPU4 83 aa3.19□□□□□ -1.9
VPS13A-207ENST00000419472 EPPK1P58107 5090 aaKnown RBP3.19□□□□□ -1.9
VPS13A-207ENST00000419472 H3BUX3 64 aa3.19□□□□□ -1.9
VPS13A-207ENST00000419472 IGHV3-30-3P0DP02 117 aa3.19□□□□□ -1.9
VPS13A-207ENST00000419472 Q8TAT8 98 aa3.19□□□□□ -1.9
VPS13A-207ENST00000419472 IGKV3-7A0A075B6H7 116 aa3.18□□□□□ -1.9
VPS13A-207ENST00000419472 SPANXN1Q5VSR9 72 aa3.18□□□□□ -1.9
VPS13A-207ENST00000419472 ENHOQ6UWT2 76 aa3.18□□□□□ -1.9
VPS13A-207ENST00000419472 NSD1Q96L73 2696 aaPredicted RBP3.18□□□□□ -1.9
VPS13A-207ENST00000419472 MINOS1Q5TGZ0 78 aa3.18□□□□□ -1.9
VPS13A-207ENST00000419472 SPANXA2-OT1Q8N9U9 137 aa3.18□□□□□ -1.9
VPS13A-207ENST00000419472 WFDC9Q8NEX5 89 aa3.18□□□□□ -1.9
VPS13A-207ENST00000419472 KRTAP4-9Q9BYQ8 210 aa3.18□□□□□ -1.9
VPS13A-207ENST00000419472 MINOS1-NBL1R4GNA1 71 aa3.18□□□□□ -1.9
VPS13A-207ENST00000419472 TENM1Q9UKZ4 2725 aa3.18□□□□□ -1.9
VPS13A-207ENST00000419472 IGHV3-64A0A075B6Q5 118 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 TRBV7-4A0A0J9YYF1 115 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 Q8N6K4 173 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 KIF25-AS1Q9Y6Z4 181 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 HYDINQ4G0P3 5121 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 UBE2L6O14933 153 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 ERC2-IT1O76042 136 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 CTSGP08311 255 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 POLR2KP53803 58 aaKnown RBP3.17□□□□□ -1.9
VPS13A-207ENST00000419472 RPL39P62891 51 aaKnown RBP3.17□□□□□ -1.9
VPS13A-207ENST00000419472 C10orf99Q6UWK7 81 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 PHF5AQ7RTV0 110 aaKnown RBP3.17□□□□□ -1.9
VPS13A-207ENST00000419472 DYNLRB2Q8TF09 96 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 NDUFA12Q9UI09 145 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 MEGF8Q7Z7M0 2845 aa3.17□□□□□ -1.9
VPS13A-207ENST00000419472 ZNF625Q96I27 306 aaPredicted RBP3.17□□□□□ -1.9
VPS13A-207ENST00000419472 TRRAPQ9Y4A5 3859 aa3.16□□□□□ -1.9
VPS13A-207ENST00000419472 TRAV10A0A0B4J240 114 aa3.16□□□□□ -1.9
VPS13A-207ENST00000419472 C5orf56Q8N8D9 126 aa3.16□□□□□ -1.9
VPS13A-207ENST00000419472 DEFB1P60022 68 aa3.16□□□□□ -1.9
VPS13A-207ENST00000419472 UBE2BP63146 152 aa3.16□□□□□ -1.9
VPS13A-207ENST00000419472 DEFB112Q30KQ8 113 aa3.16□□□□□ -1.9
VPS13A-207ENST00000419472 LINC00308Q8TCZ7 52 aa3.16□□□□□ -1.9
VPS13A-207ENST00000419472 ZNF73O43830 326 aaPredicted RBP3.15□□□□□ -1.9
VPS13A-207ENST00000419472 hDV103S1A0JD37 113 aa3.15□□□□□ -1.91
VPS13A-207ENST00000419472 KRTAP4-2Q9BYR5 136 aa3.15□□□□□ -1.91
VPS13A-207ENST00000419472 SMAD5-AS1Q9Y6J3 95 aa3.15□□□□□ -1.91
VPS13A-207ENST00000419472 TMEM256-PLSCR3K7ERE1 68 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 PRM2P04554 102 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 LINC00483Q53H64 154 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 UBL5Q9BZL1 73 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 TRBV6-5A0A0K0K1A5 114 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 C16orf90A8MZG2 172 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 NCR3O14931 201 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 NDUFA1O15239 70 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 FUSP35637 526 aaKnown RBP eCLIP3.14□□□□□ -1.91
VPS13A-207ENST00000419472 LINC00315P59091 139 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 TMEM254Q8TBM7 123 aa3.14□□□□□ -1.91
VPS13A-207ENST00000419472 MGPP08493 103 aa3.13□□□□□ -1.91
VPS13A-207ENST00000419472 KRTAP10-11P60412 298 aa3.13□□□□□ -1.91
VPS13A-207ENST00000419472 TRAV22A0A0B4J277 110 aa3.13□□□□□ -1.91
VPS13A-207ENST00000419472 CLPSL1A2RUU4 121 aa3.13□□□□□ -1.91
VPS13A-207ENST00000419472 H0YGX0 51 aa3.13□□□□□ -1.91
VPS13A-207ENST00000419472 H3BQ85 93 aa3.13□□□□□ -1.91
VPS13A-207ENST00000419472 A6NN06 94 aa3.12□□□□□ -1.91
VPS13A-207ENST00000419472 JMJD7-PLA2G4BH0Y9G9 81 aa3.12□□□□□ -1.91
VPS13A-207ENST00000419472 DEFB136Q30KP8 78 aa3.12□□□□□ -1.91
VPS13A-207ENST00000419472 NACAE9PAV3 2078 aa3.12□□□□□ -1.91
VPS13A-207ENST00000419472 ANK3Q12955 4377 aaKnown RBP3.12□□□□□ -1.91
VPS13A-207ENST00000419472 ATP11AUNQ6ZP68 121 aa3.12□□□□□ -1.91
VPS13A-207ENST00000419472 LCA10Q71F78 164 aa3.12□□□□□ -1.91
VPS13A-207ENST00000419472 ORMDL1Q9P0S3 153 aa3.12□□□□□ -1.91
VPS13A-207ENST00000419472 IGKV2-29A2NJV5 120 aaPredicted RBP3.11□□□□□ -1.91
VPS13A-207ENST00000419472 NREPQ16612 68 aa3.11□□□□□ -1.91
VPS13A-207ENST00000419472 LINC00269Q8N2A0 174 aa3.11□□□□□ -1.91
VPS13A-207ENST00000419472 DIRC1Q969H9 104 aa3.11□□□□□ -1.91
VPS13A-207ENST00000419472 LINC00167Q96N53 147 aa3.11□□□□□ -1.91
VPS13A-207ENST00000419472 A8MU10 97 aa3.11□□□□□ -1.91
VPS13A-207ENST00000419472 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.11□□□□□ -1.91
VPS13A-207ENST00000419472 C7orf65Q6ZTY9 151 aa3.11□□□□□ -1.91
VPS13A-207ENST00000419472 LENEPQ9Y5L5 61 aa3.11□□□□□ -1.91
VPS13A-207ENST00000419472 DEFB104AQ8WTQ1 72 aa3.1□□□□□ -1.91
VPS13A-207ENST00000419472 RHPN1-AS1Q9BWJ2 59 aa3.1□□□□□ -1.91
VPS13A-207ENST00000419472 S100A4P26447 101 aaKnown RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms