RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 HIST1H2BOP23527 126 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 HIST1H2BBP33778 126 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 HIST1H2BDP58876 126 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 HIST1H2BCP62807 126 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 HIST2H2BEQ16778 126 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 LINC00483Q53H64 154 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.6□□□□□ -1.03
UBXN4-203ENST00000416538 LCE1DQ5T752 114 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 Q8NBF4 154 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 HIST1H2BHQ93079 126 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 HIST1H2BNQ99877 126 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 HIST1H2BMQ99879 126 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 ZNF706Q9Y5V0 76 aaPredicted RBP8.6□□□□□ -1.03
UBXN4-203ENST00000416538 DDTP30046 118 aa8.59□□□□□ -1.03
UBXN4-203ENST00000416538 TRBV10-2A0A0K0K1G8 114 aa8.58□□□□□ -1.04
UBXN4-203ENST00000416538 NPC2P61916 151 aa8.58□□□□□ -1.04
UBXN4-203ENST00000416538 CTAG1AP78358 180 aa8.58□□□□□ -1.04
UBXN4-203ENST00000416538 ADAMTSL4-AS1Q5T5F5 129 aa8.58□□□□□ -1.04
UBXN4-203ENST00000416538 SPANXB1Q9NS25 103 aaPredicted RBP8.58□□□□□ -1.04
UBXN4-203ENST00000416538 A0A0J9YXY3 114 aa8.57□□□□□ -1.04
UBXN4-203ENST00000416538 SYS1-DBNDD2H3BUS1 97 aa8.57□□□□□ -1.04
UBXN4-203ENST00000416538 IGLV6-57P01721 117 aa8.57□□□□□ -1.04
UBXN4-203ENST00000416538 S100A12P80511 92 aa8.57□□□□□ -1.04
UBXN4-203ENST00000416538 Q6ZRX8 168 aa8.57□□□□□ -1.04
UBXN4-203ENST00000416538 GAGE2AQ6NT46 116 aa8.56□□□□□ -1.04
UBXN4-203ENST00000416538 MIEN1Q9BRT3 115 aa8.56□□□□□ -1.04
UBXN4-203ENST00000416538 E9PLD3 99 aa8.55□□□□□ -1.04
UBXN4-203ENST00000416538 SPAG11AQ6PDA7 123 aa8.55□□□□□ -1.04
UBXN4-203ENST00000416538 LITAFQ99732 161 aa8.55□□□□□ -1.04
UBXN4-203ENST00000416538 CDIP1Q9H305 208 aa8.55□□□□□ -1.04
UBXN4-203ENST00000416538 NDUFC2O95298 119 aa8.54□□□□□ -1.04
UBXN4-203ENST00000416538 MOBPQ13875 183 aa8.54□□□□□ -1.04
UBXN4-203ENST00000416538 FAT4Q6V0I7 4981 aa8.54□□□□□ -1.04
UBXN4-203ENST00000416538 PET117Q6UWS5 81 aa8.53□□□□□ -1.04
UBXN4-203ENST00000416538 KRTAP4-7Q9BYR0 210 aa8.53□□□□□ -1.04
UBXN4-203ENST00000416538 TRAV23DV6A0A075B6W5 121 aa8.52□□□□□ -1.05
UBXN4-203ENST00000416538 KRTAP13-3Q3SY46 172 aa8.52□□□□□ -1.05
UBXN4-203ENST00000416538 LINC01545Q5VT33 79 aa8.52□□□□□ -1.05
UBXN4-203ENST00000416538 IGLV9-49A0A0B4J1Y8 123 aa8.51□□□□□ -1.05
UBXN4-203ENST00000416538 TTTY13Q9BZ97 58 aa8.51□□□□□ -1.05
UBXN4-203ENST00000416538 S100A7L2Q5SY68 101 aa8.5□□□□□ -1.05
UBXN4-203ENST00000416538 FP248Q71RG6 208 aaPredicted RBP8.5□□□□□ -1.05
UBXN4-203ENST00000416538 ZNF73O43830 326 aaPredicted RBP8.49□□□□□ -1.05
UBXN4-203ENST00000416538 COA6Q5JTJ3 125 aaKnown RBP8.49□□□□□ -1.05
UBXN4-203ENST00000416538 ST20-AS1Q8NBB2 130 aa8.49□□□□□ -1.05
UBXN4-203ENST00000416538 A0A0U1RQV1 116 aa8.48□□□□□ -1.05
UBXN4-203ENST00000416538 SPINK1P00995 79 aa8.48□□□□□ -1.05
UBXN4-203ENST00000416538 C3orf79P0CE67 100 aa8.48□□□□□ -1.05
UBXN4-203ENST00000416538 Q8N377 158 aa8.48□□□□□ -1.05
UBXN4-203ENST00000416538 LINC00308Q8TCZ7 52 aa8.48□□□□□ -1.05
UBXN4-203ENST00000416538 KRTDAPP60985 99 aa8.47□□□□□ -1.05
UBXN4-203ENST00000416538 TIMM17BO60830 172 aa8.46□□□□□ -1.06
UBXN4-203ENST00000416538 C20orf202A1L168 122 aa8.45□□□□□ -1.06
UBXN4-203ENST00000416538 ZNF815PA8K554 130 aa8.45□□□□□ -1.06
UBXN4-203ENST00000416538 SPANXCQ9NY87 97 aa8.45□□□□□ -1.06
UBXN4-203ENST00000416538 RPS29P62273 56 aaKnown RBP8.44□□□□□ -1.06
UBXN4-203ENST00000416538 SSBP3-AS1Q7Z2R9 100 aa8.44□□□□□ -1.06
UBXN4-203ENST00000416538 KRTAP4-1Q9BYQ7 146 aa8.44□□□□□ -1.06
UBXN4-203ENST00000416538 CBY1Q9Y3M2 126 aa8.44□□□□□ -1.06
UBXN4-203ENST00000416538 JOSD1Q15040 202 aaPredicted RBP8.43□□□□□ -1.06
UBXN4-203ENST00000416538 C9orf153Q5TBE3 101 aa8.42□□□□□ -1.06
UBXN4-203ENST00000416538 HINT1P49773 126 aaPredicted RBP8.41□□□□□ -1.06
UBXN4-203ENST00000416538 AKR1D1P51857 326 aa8.4□□□□□ -1.06
UBXN4-203ENST00000416538 ASB16-AS1Q495Z4 193 aa8.4□□□□□ -1.06
UBXN4-203ENST00000416538 OR13C6PQ8NH95 151 aa8.4□□□□□ -1.06
UBXN4-203ENST00000416538 SPRR1BP22528 89 aa8.39□□□□□ -1.07
UBXN4-203ENST00000416538 SCGB1D4Q6XE38 83 aa8.39□□□□□ -1.07
UBXN4-203ENST00000416538 SPANXDQ9BXN6 97 aa8.39□□□□□ -1.07
UBXN4-203ENST00000416538 LINC00518Q8N0U6 118 aa8.38□□□□□ -1.07
UBXN4-203ENST00000416538 S100A1P23297 94 aa8.37□□□□□ -1.07
UBXN4-203ENST00000416538 ELOF1P60002 83 aaKnown RBP8.37□□□□□ -1.07
UBXN4-203ENST00000416538 C6orf99Q4VX62 202 aa8.37□□□□□ -1.07
UBXN4-203ENST00000416538 ATOH7Q8N100 152 aa8.37□□□□□ -1.07
UBXN4-203ENST00000416538 C5orf52A6NGY3 159 aa8.36□□□□□ -1.07
UBXN4-203ENST00000416538 SLC25A20O43772 301 aa8.36□□□□□ -1.07
UBXN4-203ENST00000416538 COPS9Q8WXC6 57 aa8.36□□□□□ -1.07
UBXN4-203ENST00000416538 LCE4AQ5TA78 99 aa8.35□□□□□ -1.07
UBXN4-203ENST00000416538 COX7BP24311 80 aa8.34□□□□□ -1.07
UBXN4-203ENST00000416538 S100A2P29034 98 aa8.34□□□□□ -1.07
UBXN4-203ENST00000416538 SNRPEP62304 92 aaKnown RBP8.34□□□□□ -1.07
UBXN4-203ENST00000416538 PCP2Q8IVA1 136 aa8.34□□□□□ -1.07
UBXN4-203ENST00000416538 KRTAP4-9Q9BYQ8 210 aa8.34□□□□□ -1.07
UBXN4-203ENST00000416538 DHRS4-AS1Q9P1J3 65 aa8.34□□□□□ -1.07
UBXN4-203ENST00000416538 IFITM1P13164 125 aa8.33□□□□□ -1.08
UBXN4-203ENST00000416538 HRCT1Q6UXD1 115 aa8.32□□□□□ -1.08
UBXN4-203ENST00000416538 Q6ZVH6 145 aa8.32□□□□□ -1.08
UBXN4-203ENST00000416538 LINC01547P58512 204 aaPredicted RBP8.31□□□□□ -1.08
UBXN4-203ENST00000416538 Q1RN00 199 aa8.31□□□□□ -1.08
UBXN4-203ENST00000416538 HIST3H2BBQ8N257 126 aa8.31□□□□□ -1.08
UBXN4-203ENST00000416538 S100A6P06703 90 aa8.3□□□□□ -1.08
UBXN4-203ENST00000416538 KRTAP19-4Q3LI73 84 aa8.3□□□□□ -1.08
UBXN4-203ENST00000416538 SMIM29Q86T20 159 aa8.3□□□□□ -1.08
UBXN4-203ENST00000416538 HIST1H2BLQ99880 126 aa8.3□□□□□ -1.08
UBXN4-203ENST00000416538 MUSTN1Q8IVN3 82 aa8.29□□□□□ -1.08
UBXN4-203ENST00000416538 A0A0G2JQZ4 141 aa8.28□□□□□ -1.08
UBXN4-203ENST00000416538 A6NDN8 102 aa8.28□□□□□ -1.08
UBXN4-203ENST00000416538 HSBP1L1C9JCN9 74 aa8.28□□□□□ -1.08
UBXN4-203ENST00000416538 SEC61BP60468 96 aaKnown RBP8.28□□□□□ -1.08
UBXN4-203ENST00000416538 SLC25A34Q6PIV7 304 aa8.28□□□□□ -1.08
UBXN4-203ENST00000416538 DEFB105AQ8NG35 78 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms