RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 DIRC1Q969H9 104 aa12.85□□□□□ -0.35
HDDC3-202ENST00000394272 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.85□□□□□ -0.35
HDDC3-202ENST00000394272 KRTAP10-2P60368 255 aa12.84□□□□□ -0.35
HDDC3-202ENST00000394272 A0A087WYN8 130 aa12.83□□□□□ -0.36
HDDC3-202ENST00000394272 F8W1H4 67 aa12.83□□□□□ -0.36
HDDC3-202ENST00000394272 TRACP01848 142 aa12.83□□□□□ -0.36
HDDC3-202ENST00000394272 RPL37AP8A6NKH3 93 aa12.82□□□□□ -0.36
HDDC3-202ENST00000394272 C9JAW5 83 aa12.82□□□□□ -0.36
HDDC3-202ENST00000394272 TRBV7-6A0A0J9YX20 115 aa12.8□□□□□ -0.36
HDDC3-202ENST00000394272 SMCPP49901 116 aaPredicted RBP12.8□□□□□ -0.36
HDDC3-202ENST00000394272 EPM2AB3EWF7 344 aa12.8□□□□□ -0.36
HDDC3-202ENST00000394272 PRYO14603 147 aa12.8□□□□□ -0.36
HDDC3-202ENST00000394272 SPRR1AP35321 89 aa12.78□□□□□ -0.36
HDDC3-202ENST00000394272 ELOF1P60002 83 aaKnown RBP12.78□□□□□ -0.36
HDDC3-202ENST00000394272 A0A1B0GX51 115 aa12.78□□□□□ -0.36
HDDC3-202ENST00000394272 SLC25A20O43772 301 aa12.78□□□□□ -0.36
HDDC3-202ENST00000394272 LINC00575Q6W349 94 aa12.78□□□□□ -0.36
HDDC3-202ENST00000394272 PHF5AQ7RTV0 110 aaKnown RBP12.77□□□□□ -0.37
HDDC3-202ENST00000394272 COX7BP24311 80 aa12.76□□□□□ -0.37
HDDC3-202ENST00000394272 KRTAP4-16G5E9R7 235 aaPredicted RBP12.76□□□□□ -0.37
HDDC3-202ENST00000394272 DPH3Q96FX2 82 aa12.76□□□□□ -0.37
HDDC3-202ENST00000394272 LINC01600Q96MT4 127 aa12.75□□□□□ -0.37
HDDC3-202ENST00000394272 LINC00336Q6ZUF6 198 aa12.74□□□□□ -0.37
HDDC3-202ENST00000394272 LINC00528Q8N1L1 170 aa12.74□□□□□ -0.37
HDDC3-202ENST00000394272 DNAL4O96015 105 aa12.73□□□□□ -0.37
HDDC3-202ENST00000394272 H3BT86 120 aa12.72□□□□□ -0.37
HDDC3-202ENST00000394272 OCIAD2Q56VL3 154 aa12.72□□□□□ -0.37
HDDC3-202ENST00000394272 ANKRD29Q8N6D5 301 aa12.72□□□□□ -0.37
HDDC3-202ENST00000394272 REG3GQ6UW15 175 aa12.72□□□□□ -0.37
HDDC3-202ENST00000394272 KRTAP11-1Q8IUC1 163 aa12.72□□□□□ -0.37
HDDC3-202ENST00000394272 PLAC8Q9NZF1 115 aa12.72□□□□□ -0.37
HDDC3-202ENST00000394272 hADV29S1A0JD25 119 aa12.71□□□□□ -0.37
HDDC3-202ENST00000394272 B5MCH6 92 aa12.7□□□□□ -0.38
HDDC3-202ENST00000394272 UBE2BP63146 152 aa12.7□□□□□ -0.38
HDDC3-202ENST00000394272 PKHD1P08F94 4074 aa12.69□□□□□ -0.38
HDDC3-202ENST00000394272 SNCGO76070 127 aa12.69□□□□□ -0.38
HDDC3-202ENST00000394272 ETDBQ3ZM63 59 aa12.69□□□□□ -0.38
HDDC3-202ENST00000394272 Q6ZRX8 168 aa12.69□□□□□ -0.38
HDDC3-202ENST00000394272 ETDCA0A1B0GVM5 59 aa12.68□□□□□ -0.38
HDDC3-202ENST00000394272 BAALC-AS2P0C853 105 aa12.68□□□□□ -0.38
HDDC3-202ENST00000394272 KRTAP10-1P60331 282 aa12.67□□□□□ -0.38
HDDC3-202ENST00000394272 LRP1BQ9NZR2 4599 aa12.66□□□□□ -0.38
HDDC3-202ENST00000394272 Q6ZSA8 131 aa12.66□□□□□ -0.38
HDDC3-202ENST00000394272 FAM30AQ9NZY2 134 aa12.66□□□□□ -0.38
HDDC3-202ENST00000394272 ORMDL1Q9P0S3 153 aa12.65□□□□□ -0.38
HDDC3-202ENST00000394272 K7ERU9 68 aa12.65□□□□□ -0.38
HDDC3-202ENST00000394272 INAFM2P0DMQ5 153 aa12.65□□□□□ -0.38
HDDC3-202ENST00000394272 TEN1Q86WV5 123 aa12.65□□□□□ -0.38
HDDC3-202ENST00000394272 Q9BRP9 147 aa12.64□□□□□ -0.39
HDDC3-202ENST00000394272 A0A1B0GVY2 172 aa12.63□□□□□ -0.39
HDDC3-202ENST00000394272 Q6ZQY7 126 aa12.63□□□□□ -0.39
HDDC3-202ENST00000394272 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.62□□□□□ -0.39
HDDC3-202ENST00000394272 DHRS4-AS1Q9P1J3 65 aa12.61□□□□□ -0.39
HDDC3-202ENST00000394272 DYNC1H1Q14204 4646 aaKnown RBP12.61□□□□□ -0.39
HDDC3-202ENST00000394272 RYR3Q15413 4870 aa12.61□□□□□ -0.39
HDDC3-202ENST00000394272 FAM19A1Q7Z5A9 133 aa12.6□□□□□ -0.39
HDDC3-202ENST00000394272 CIRBP-AS1Q8TBR5 109 aa12.59□□□□□ -0.39
HDDC3-202ENST00000394272 PRLHP81277 87 aa12.58□□□□□ -0.4
HDDC3-202ENST00000394272 TMEM256-PLSCR3K7ERE1 68 aa12.57□□□□□ -0.4
HDDC3-202ENST00000394272 BCE1O60756 84 aa12.57□□□□□ -0.4
HDDC3-202ENST00000394272 SCXQ7RTU7 201 aa12.57□□□□□ -0.4
HDDC3-202ENST00000394272 SMCR5Q8TEV8 140 aa12.57□□□□□ -0.4
HDDC3-202ENST00000394272 H0Y9J4 135 aa12.56□□□□□ -0.4
HDDC3-202ENST00000394272 TEX49A0A1B0GTD5 131 aa12.55□□□□□ -0.4
HDDC3-202ENST00000394272 PPDPFLQ8WWR9 84 aa12.55□□□□□ -0.4
HDDC3-202ENST00000394272 ERC2-IT1O76042 136 aa12.54□□□□□ -0.4
HDDC3-202ENST00000394272 VPS25Q9BRG1 176 aa12.54□□□□□ -0.4
HDDC3-202ENST00000394272 H3BQ85 93 aa12.53□□□□□ -0.4
HDDC3-202ENST00000394272 PSORS1C2Q9UIG4 136 aa12.53□□□□□ -0.4
HDDC3-202ENST00000394272 KRTAP13-1Q8IUC0 172 aa12.53□□□□□ -0.4
HDDC3-202ENST00000394272 GHRHP01286 108 aa12.52□□□□□ -0.41
HDDC3-202ENST00000394272 LINC01547P58512 204 aaPredicted RBP12.51□□□□□ -0.41
HDDC3-202ENST00000394272 OBSCN-AS1Q96MR7 158 aa12.51□□□□□ -0.41
HDDC3-202ENST00000394272 UBE2AP49459 152 aa12.5□□□□□ -0.41
HDDC3-202ENST00000394272 HAMPP81172 84 aa12.49□□□□□ -0.41
HDDC3-202ENST00000394272 ST20-AS1Q8NBB2 130 aa12.49□□□□□ -0.41
HDDC3-202ENST00000394272 HIGD2AQ9BW72 106 aa12.49□□□□□ -0.41
HDDC3-202ENST00000394272 IGLV5-48A0A075B6I7 105 aa12.48□□□□□ -0.41
HDDC3-202ENST00000394272 Q8N377 158 aa12.47□□□□□ -0.41
HDDC3-202ENST00000394272 APOBP04114 4563 aaKnown RBP12.47□□□□□ -0.41
HDDC3-202ENST00000394272 C1orf137Q5JT78 98 aa12.46□□□□□ -0.42
HDDC3-202ENST00000394272 DEFB105AQ8NG35 78 aa12.45□□□□□ -0.42
HDDC3-202ENST00000394272 JMJD7-PLA2G4BH0Y9G9 81 aa12.44□□□□□ -0.42
HDDC3-202ENST00000394272 J3QR89 54 aa12.44□□□□□ -0.42
HDDC3-202ENST00000394272 SRRM2Q9UQ35 2752 aaKnown RBP12.43□□□□□ -0.42
HDDC3-202ENST00000394272 LAMTOR3Q9UHA4 124 aa12.43□□□□□ -0.42
HDDC3-202ENST00000394272 NDUFV3P56181 108 aaKnown RBP12.42□□□□□ -0.42
HDDC3-202ENST00000394272 VPS13BQ7Z7G8 4022 aa12.42□□□□□ -0.42
HDDC3-202ENST00000394272 A0A1B0GV72 72 aa12.41□□□□□ -0.42
HDDC3-202ENST00000394272 C14orf132Q9NPU4 83 aa12.4□□□□□ -0.42
HDDC3-202ENST00000394272 ZNF861PO60384 105 aa12.4□□□□□ -0.42
HDDC3-202ENST00000394272 IGLV7-43P04211 117 aa12.38□□□□□ -0.43
HDDC3-202ENST00000394272 RBM3P98179 157 aaKnown RBP12.38□□□□□ -0.43
HDDC3-202ENST00000394272 XGP55808 180 aa12.37□□□□□ -0.43
HDDC3-202ENST00000394272 C3orf22Q8N5N4 141 aa12.36□□□□□ -0.43
HDDC3-202ENST00000394272 SMIM29Q86T20 159 aa12.36□□□□□ -0.43
HDDC3-202ENST00000394272 SPRR1BP22528 89 aa12.35□□□□□ -0.43
HDDC3-202ENST00000394272 PCP4P48539 62 aa12.33□□□□□ -0.44
HDDC3-202ENST00000394272 GAGE2AQ6NT46 116 aa12.32□□□□□ -0.44
HDDC3-202ENST00000394272 LOC110117498A0A087WWA1 95 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms