RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 H7BZZ5 65 aa9.2□□□□□ -0.94
USP49-203ENST00000394253 H3BNG1 76 aa9.17□□□□□ -0.94
USP49-203ENST00000394253 STAB2Q8WWQ8 2551 aa9.17□□□□□ -0.94
USP49-203ENST00000394253 WIPF1O43516 503 aa9.17□□□□□ -0.94
USP49-203ENST00000394253 NOTCH1P46531 2555 aa9.16□□□□□ -0.94
USP49-203ENST00000394253 FAM104AQ969W3 186 aa9.14□□□□□ -0.95
USP49-203ENST00000394253 DMAC1Q96GE9 116 aa9.14□□□□□ -0.95
USP49-203ENST00000394253 GVQW2A0A096LPI5 108 aaPredicted RBP9.14□□□□□ -0.95
USP49-203ENST00000394253 CHTF8P0CG12 524 aa9.14□□□□□ -0.95
USP49-203ENST00000394253 RBM12B-AS1Q9P1G2 102 aa9.14□□□□□ -0.95
USP49-203ENST00000394253 FHL3Q13643 280 aa9.14□□□□□ -0.95
USP49-203ENST00000394253 A0A1B0GVX0 72 aa9.13□□□□□ -0.95
USP49-203ENST00000394253 A0A0D9SG42 100 aa9.13□□□□□ -0.95
USP49-203ENST00000394253 C16orf95Q9H693 158 aa9.13□□□□□ -0.95
USP49-203ENST00000394253 ITPR3Q14573 2671 aa9.11□□□□□ -0.95
USP49-203ENST00000394253 PHF5AQ7RTV0 110 aaKnown RBP9.1□□□□□ -0.95
USP49-203ENST00000394253 CAMK2N1Q7Z7J9 78 aa9.09□□□□□ -0.95
USP49-203ENST00000394253 A0A1W2PNU3 283 aaPredicted RBP9.08□□□□□ -0.96
USP49-203ENST00000394253 OBSCN-AS1Q96MR7 158 aa9.08□□□□□ -0.96
USP49-203ENST00000394253 RTL8CO15255 209 aa9.07□□□□□ -0.96
USP49-203ENST00000394253 CHD6Q8TD26 2715 aa9.07□□□□□ -0.96
USP49-203ENST00000394253 IGLV5-48A0A075B6I7 105 aa9.04□□□□□ -0.96
USP49-203ENST00000394253 COL6A5A8TX70 2615 aa9.03□□□□□ -0.96
USP49-203ENST00000394253 Q75L30 129 aa9.03□□□□□ -0.96
USP49-203ENST00000394253 LINC00304Q8N9R0 145 aa9.03□□□□□ -0.96
USP49-203ENST00000394253 KCNQ1DNQ9H478 68 aa9.02□□□□□ -0.96
USP49-203ENST00000394253 IGLV5-37A0A075B6J1 123 aa9.02□□□□□ -0.97
USP49-203ENST00000394253 FLNAP21333 2647 aaKnown RBP9.01□□□□□ -0.97
USP49-203ENST00000394253 DSCR10P59022 87 aa9.01□□□□□ -0.97
USP49-203ENST00000394253 IGFL1Q6UW32 110 aa9.01□□□□□ -0.97
USP49-203ENST00000394253 WISP2O76076 250 aa8.99□□□□□ -0.97
USP49-203ENST00000394253 LINC00588Q9Y4M8 146 aa8.99□□□□□ -0.97
USP49-203ENST00000394253 J3QL48 77 aa8.98□□□□□ -0.97
USP49-203ENST00000394253 UNC79Q9P2D8 2635 aa8.97□□□□□ -0.97
USP49-203ENST00000394253 LINC00315P59091 139 aa8.97□□□□□ -0.97
USP49-203ENST00000394253 DNAH10OSP0CZ25 163 aa8.97□□□□□ -0.97
USP49-203ENST00000394253 NBDYA0A0U1RRE5 68 aa8.96□□□□□ -0.98
USP49-203ENST00000394253 PLA2G2DQ9UNK4 145 aa8.96□□□□□ -0.98
USP49-203ENST00000394253 A0A1B0GU33 70 aa8.96□□□□□ -0.98
USP49-203ENST00000394253 LINC00528Q8N1L1 170 aa8.95□□□□□ -0.98
USP49-203ENST00000394253 HELZ2Q9BYK8 2649 aaKnown RBP8.95□□□□□ -0.98
USP49-203ENST00000394253 FLNBO75369 2602 aaKnown RBP8.94□□□□□ -0.98
USP49-203ENST00000394253 LITAFQ99732 161 aa8.93□□□□□ -0.98
USP49-203ENST00000394253 FAM168BA1KXE4 195 aa8.93□□□□□ -0.98
USP49-203ENST00000394253 ZNF575Q86XF7 245 aa8.93□□□□□ -0.98
USP49-203ENST00000394253 C15orf56Q8N910 161 aa8.92□□□□□ -0.98
USP49-203ENST00000394253 IGLV1-50A0A075B6I6 118 aa8.92□□□□□ -0.98
USP49-203ENST00000394253 ZNF861PO60384 105 aa8.91□□□□□ -0.98
USP49-203ENST00000394253 GCN1Q92616 2671 aaKnown RBP8.91□□□□□ -0.98
USP49-203ENST00000394253 C9orf92A6NGG3 77 aa8.9□□□□□ -0.98
USP49-203ENST00000394253 TEX15Q9BXT5 2789 aa8.88□□□□□ -0.99
USP49-203ENST00000394253 NSD1Q96L73 2696 aaPredicted RBP8.88□□□□□ -0.99
USP49-203ENST00000394253 Q8N1X5 172 aa8.87□□□□□ -0.99
USP49-203ENST00000394253 HRES1P13985 223 aa8.87□□□□□ -0.99
USP49-203ENST00000394253 Q8N377 158 aa8.87□□□□□ -0.99
USP49-203ENST00000394253 SMR3AQ99954 134 aa8.86□□□□□ -0.99
USP49-203ENST00000394253 CDSNQ15517 529 aa8.86□□□□□ -0.99
USP49-203ENST00000394253 SPINK7P58062 85 aa8.85□□□□□ -0.99
USP49-203ENST00000394253 TEP1Q99973 2627 aaKnown RBP8.83□□□□□ -1
USP49-203ENST00000394253 CSAG1Q6PB30 78 aa8.83□□□□□ -1
USP49-203ENST00000394253 C9orf163Q8N9P6 203 aa8.83□□□□□ -1
USP49-203ENST00000394253 IGLV7-46A0A075B6I9 117 aa8.82□□□□□ -1
USP49-203ENST00000394253 SRCAPQ6ZRS2 3230 aa8.81□□□□□ -1
USP49-203ENST00000394253 KRTAP16-1A8MUX0 517 aa8.81□□□□□ -1
USP49-203ENST00000394253 OCR1Q9BZK8 76 aa8.81□□□□□ -1
USP49-203ENST00000394253 TLX1NBP0CAT3 122 aa8.81□□□□□ -1
USP49-203ENST00000394253 LINC01558Q9Y6Z2 57 aa8.8□□□□□ -1
USP49-203ENST00000394253 KMT2BQ9UMN6 2715 aaPredicted RBP8.8□□□□□ -1
USP49-203ENST00000394253 Q8NAQ8 132 aa8.79□□□□□ -1
USP49-203ENST00000394253 COL4A2P08572 1712 aa8.77□□□□□ -1.01
USP49-203ENST00000394253 IGLV7-43P04211 117 aa8.75□□□□□ -1.01
USP49-203ENST00000394253 CEP350Q5VT06 3117 aa8.74□□□□□ -1.01
USP49-203ENST00000394253 PRR26Q8N8Z3 221 aa8.74□□□□□ -1.01
USP49-203ENST00000394253 TNP2Q05952 138 aa8.72□□□□□ -1.01
USP49-203ENST00000394253 UTP20O75691 2785 aaKnown RBP8.72□□□□□ -1.01
USP49-203ENST00000394253 ASB16-AS1Q495Z4 193 aa8.72□□□□□ -1.01
USP49-203ENST00000394253 ITPR2Q14571 2701 aa8.71□□□□□ -1.01
USP49-203ENST00000394253 PRR34Q9NV39 138 aa8.69□□□□□ -1.02
USP49-203ENST00000394253 SPRR4Q96PI1 79 aa8.69□□□□□ -1.02
USP49-203ENST00000394253 ROMO1P60602 79 aa8.69□□□□□ -1.02
USP49-203ENST00000394253 APCP25054 2843 aa8.68□□□□□ -1.02
USP49-203ENST00000394253 Q6ZSA8 131 aa8.68□□□□□ -1.02
USP49-203ENST00000394253 Q8N9P0 234 aaPredicted RBP8.68□□□□□ -1.02
USP49-203ENST00000394253 PRAC1Q96KF2 57 aa8.68□□□□□ -1.02
USP49-203ENST00000394253 S4R3F8 94 aa8.65□□□□□ -1.02
USP49-203ENST00000394253 MAP1AP78559 2803 aaPredicted RBP8.64□□□□□ -1.03
USP49-203ENST00000394253 WWC2-AS2Q96NR7 200 aa8.64□□□□□ -1.03
USP49-203ENST00000394253 Q5XG85 94 aa8.63□□□□□ -1.03
USP49-203ENST00000394253 PCNTO95613 3336 aa8.63□□□□□ -1.03
USP49-203ENST00000394253 Q5VV11 94 aa8.63□□□□□ -1.03
USP49-203ENST00000394253 PSORS1C2Q9UIG4 136 aa8.63□□□□□ -1.03
USP49-203ENST00000394253 IGSF10Q6WRI0 2623 aa8.63□□□□□ -1.03
USP49-203ENST00000394253 M0R2T5 61 aa8.62□□□□□ -1.03
USP49-203ENST00000394253 H1FX-AS1Q4G0G2 97 aa8.61□□□□□ -1.03
USP49-203ENST00000394253 R4GN34 69 aa8.61□□□□□ -1.03
USP49-203ENST00000394253 KRTAP10-9P60411 292 aa8.61□□□□□ -1.03
USP49-203ENST00000394253 FAM229BQ4G0N7 80 aa8.61□□□□□ -1.03
USP49-203ENST00000394253 A0A1W2PNM2 257 aa8.6□□□□□ -1.03
USP49-203ENST00000394253 EIF4EBP3O60516 100 aaPredicted RBP8.6□□□□□ -1.03
USP49-203ENST00000394253 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms