RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 LINC00528Q8N1L1 170 aa11.79□□□□□ -0.52
CLSTN1-202ENST00000377298 LINC00313P59037 77 aa11.79□□□□□ -0.52
CLSTN1-202ENST00000377298 TLX1NBP0CAT3 122 aa11.79□□□□□ -0.52
CLSTN1-202ENST00000377298 C9orf163Q8N9P6 203 aa11.79□□□□□ -0.52
CLSTN1-202ENST00000377298 MAST4O15021 2626 aa11.78□□□□□ -0.52
CLSTN1-202ENST00000377298 C4orf26Q17RF5 130 aa11.78□□□□□ -0.52
CLSTN1-202ENST00000377298 PRO0628Q9UI54 55 aa11.78□□□□□ -0.52
CLSTN1-202ENST00000377298 C5orf42Q9H799 3197 aa11.78□□□□□ -0.52
CLSTN1-202ENST00000377298 APLNQ9ULZ1 77 aa11.77□□□□□ -0.53
CLSTN1-202ENST00000377298 ATRQ13535 2644 aa11.76□□□□□ -0.53
CLSTN1-202ENST00000377298 CFAP46Q8IYW2 2715 aa11.76□□□□□ -0.53
CLSTN1-202ENST00000377298 ATP11AUNQ6ZP68 121 aa11.75□□□□□ -0.53
CLSTN1-202ENST00000377298 PLA2G2DQ9UNK4 145 aa11.75□□□□□ -0.53
CLSTN1-202ENST00000377298 C9orf129Q5T035 196 aaKnown RBP11.74□□□□□ -0.53
CLSTN1-202ENST00000377298 RANBP2P49792 3224 aaKnown RBP11.74□□□□□ -0.53
CLSTN1-202ENST00000377298 H3BPC8 53 aa11.73□□□□□ -0.53
CLSTN1-202ENST00000377298 LINC00336Q6ZUF6 198 aa11.72□□□□□ -0.53
CLSTN1-202ENST00000377298 Q96NJ1 140 aa11.71□□□□□ -0.53
CLSTN1-202ENST00000377298 ZNF861PO60384 105 aa11.71□□□□□ -0.53
CLSTN1-202ENST00000377298 C8orf87E5RJ46 101 aa11.69□□□□□ -0.54
CLSTN1-202ENST00000377298 TRAV22A0A0B4J277 110 aa11.69□□□□□ -0.54
CLSTN1-202ENST00000377298 TRANK1O15050 2925 aa11.68□□□□□ -0.54
CLSTN1-202ENST00000377298 ZNF292O60281 2723 aa11.68□□□□□ -0.54
CLSTN1-202ENST00000377298 CNBPP62633 177 aaKnown RBP11.68□□□□□ -0.54
CLSTN1-202ENST00000377298 A8MWP4 228 aa11.67□□□□□ -0.54
CLSTN1-202ENST00000377298 SMR3BP02814 79 aaPredicted RBP11.67□□□□□ -0.54
CLSTN1-202ENST00000377298 SSBP3-AS1Q7Z2R9 100 aa11.67□□□□□ -0.54
CLSTN1-202ENST00000377298 WIPF1O43516 503 aa11.67□□□□□ -0.54
CLSTN1-202ENST00000377298 ZNF575Q86XF7 245 aa11.67□□□□□ -0.54
CLSTN1-202ENST00000377298 CENPEQ02224 2701 aa11.66□□□□□ -0.54
CLSTN1-202ENST00000377298 ACYP2P14621 99 aa11.66□□□□□ -0.54
CLSTN1-202ENST00000377298 IGFL1Q6UW32 110 aa11.63□□□□□ -0.55
CLSTN1-202ENST00000377298 LINC00304Q8N9R0 145 aa11.63□□□□□ -0.55
CLSTN1-202ENST00000377298 COX6B2Q6YFQ2 88 aa11.63□□□□□ -0.55
CLSTN1-202ENST00000377298 CASC10Q5T4H9 136 aa11.62□□□□□ -0.55
CLSTN1-202ENST00000377298 SPAG11AQ6PDA7 123 aa11.62□□□□□ -0.55
CLSTN1-202ENST00000377298 Q8N377 158 aa11.61□□□□□ -0.55
CLSTN1-202ENST00000377298 A0A1W2PNN7 141 aa11.59□□□□□ -0.55
CLSTN1-202ENST00000377298 MRPL34Q9BQ48 92 aaKnown RBP11.59□□□□□ -0.55
CLSTN1-202ENST00000377298 K7EQZ3 153 aa11.58□□□□□ -0.56
CLSTN1-202ENST00000377298 LOC101927531A0A1B0GV80 90 aa11.57□□□□□ -0.56
CLSTN1-202ENST00000377298 IGLV7-43P04211 117 aa11.57□□□□□ -0.56
CLSTN1-202ENST00000377298 A0A1B0GU69 56 aa11.57□□□□□ -0.56
CLSTN1-202ENST00000377298 PSORS1C2Q9UIG4 136 aa11.55□□□□□ -0.56
CLSTN1-202ENST00000377298 A0A0C4DFX4 3053 aa11.54□□□□□ -0.56
CLSTN1-202ENST00000377298 LAMA3Q16787 3333 aa11.53□□□□□ -0.56
CLSTN1-202ENST00000377298 ERC2-IT1O76042 136 aa11.53□□□□□ -0.56
CLSTN1-202ENST00000377298 MKI67P46013 3256 aaKnown RBP11.53□□□□□ -0.56
CLSTN1-202ENST00000377298 IGLV5-37A0A075B6J1 123 aa11.52□□□□□ -0.57
CLSTN1-202ENST00000377298 PRR15Q8IV56 129 aa11.51□□□□□ -0.57
CLSTN1-202ENST00000377298 KLKP1Q107X0 134 aa11.5□□□□□ -0.57
CLSTN1-202ENST00000377298 SPRR4Q96PI1 79 aa11.49□□□□□ -0.57
CLSTN1-202ENST00000377298 LINC01600Q96MT4 127 aa11.49□□□□□ -0.57
CLSTN1-202ENST00000377298 C8orf17Q9NRJ1 99 aa11.49□□□□□ -0.57
CLSTN1-202ENST00000377298 CR1P17927 2039 aa11.49□□□□□ -0.57
CLSTN1-202ENST00000377298 A0A1B0GVX0 72 aa11.47□□□□□ -0.57
CLSTN1-202ENST00000377298 MGAQ8IWI9 3026 aa11.46□□□□□ -0.57
CLSTN1-202ENST00000377298 C9orf92A6NGG3 77 aa11.45□□□□□ -0.58
CLSTN1-202ENST00000377298 DSCR10P59022 87 aa11.45□□□□□ -0.58
CLSTN1-202ENST00000377298 ANAPC11Q9NYG5 84 aa11.44□□□□□ -0.58
CLSTN1-202ENST00000377298 OBSCN-AS1Q96MR7 158 aa11.43□□□□□ -0.58
CLSTN1-202ENST00000377298 TNP2Q05952 138 aa11.43□□□□□ -0.58
CLSTN1-202ENST00000377298 BRCA2P51587 3418 aa11.42□□□□□ -0.58
CLSTN1-202ENST00000377298 H7BZZ5 65 aa11.42□□□□□ -0.58
CLSTN1-202ENST00000377298 A0A0G2JQZ4 141 aa11.42□□□□□ -0.58
CLSTN1-202ENST00000377298 FAM104AQ969W3 186 aa11.38□□□□□ -0.59
CLSTN1-202ENST00000377298 A0A1W2PNM2 257 aa11.37□□□□□ -0.59
CLSTN1-202ENST00000377298 STAB1Q9NY15 2570 aa11.37□□□□□ -0.59
CLSTN1-202ENST00000377298 TEP1Q99973 2627 aaKnown RBP11.36□□□□□ -0.59
CLSTN1-202ENST00000377298 IGLV5-48A0A075B6I7 105 aa11.35□□□□□ -0.59
CLSTN1-202ENST00000377298 SETXQ7Z333 2677 aaKnown RBP11.35□□□□□ -0.59
CLSTN1-202ENST00000377298 IGLV8-61A0A075B6I0 122 aa11.33□□□□□ -0.6
CLSTN1-202ENST00000377298 A8MUN3 132 aa11.31□□□□□ -0.6
CLSTN1-202ENST00000377298 UNC79Q9P2D8 2635 aa11.3□□□□□ -0.6
CLSTN1-202ENST00000377298 RBM12B-AS1Q9P1G2 102 aa11.29□□□□□ -0.6
CLSTN1-202ENST00000377298 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.29□□□□□ -0.6
CLSTN1-202ENST00000377298 AKAP13Q12802 2813 aa11.29□□□□□ -0.6
CLSTN1-202ENST00000377298 TEX15Q9BXT5 2789 aa11.27□□□□□ -0.6
CLSTN1-202ENST00000377298 PRUNE2Q8WUY3 3088 aa11.27□□□□□ -0.6
CLSTN1-202ENST00000377298 COA5Q86WW8 74 aa11.26□□□□□ -0.61
CLSTN1-202ENST00000377298 IGSF10Q6WRI0 2623 aa11.26□□□□□ -0.61
CLSTN1-202ENST00000377298 CD164Q04900 197 aa11.25□□□□□ -0.61
CLSTN1-202ENST00000377298 COL6A5A8TX70 2615 aa11.25□□□□□ -0.61
CLSTN1-202ENST00000377298 DSPP15924 2871 aaKnown RBP11.24□□□□□ -0.61
CLSTN1-202ENST00000377298 WDFY4Q6ZS81 3184 aa11.23□□□□□ -0.61
CLSTN1-202ENST00000377298 CFAP54Q96N23 3096 aa11.22□□□□□ -0.61
CLSTN1-202ENST00000377298 CYP4F30PQ9H0H9 118 aa11.22□□□□□ -0.61
CLSTN1-202ENST00000377298 LAMA2P24043 3122 aaKnown RBP11.22□□□□□ -0.61
CLSTN1-202ENST00000377298 CHD6Q8TD26 2715 aa11.21□□□□□ -0.62
CLSTN1-202ENST00000377298 PLAC8Q9NZF1 115 aa11.2□□□□□ -0.62
CLSTN1-202ENST00000377298 FAM229BQ4G0N7 80 aa11.17□□□□□ -0.62
CLSTN1-202ENST00000377298 UNC80Q8N2C7 3258 aa11.16□□□□□ -0.62
CLSTN1-202ENST00000377298 IGLV7-46A0A075B6I9 117 aa11.13□□□□□ -0.63
CLSTN1-202ENST00000377298 SPRR1AP35321 89 aa11.13□□□□□ -0.63
CLSTN1-202ENST00000377298 PRR26Q8N8Z3 221 aa11.13□□□□□ -0.63
CLSTN1-202ENST00000377298 Q6ZSA8 131 aa11.12□□□□□ -0.63
CLSTN1-202ENST00000377298 BAHCC1Q9P281 2608 aa11.11□□□□□ -0.63
CLSTN1-202ENST00000377298 OCR1Q9BZK8 76 aa11.1□□□□□ -0.63
CLSTN1-202ENST00000377298 UQCR11O14957 56 aa11.1□□□□□ -0.63
CLSTN1-202ENST00000377298 KRTAP1-5Q9BYS1 174 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms