RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 CHTF8P0CG12 524 aa4.37□□□□□ -1.71
SMC1A-202ENST00000375340 PHF5AQ7RTV0 110 aaKnown RBP4.37□□□□□ -1.71
SMC1A-202ENST00000375340 LINC00474Q9P2X8 69 aa4.37□□□□□ -1.71
SMC1A-202ENST00000375340 KRTAP10-11P60412 298 aa4.37□□□□□ -1.71
SMC1A-202ENST00000375340 UNC79Q9P2D8 2635 aa4.37□□□□□ -1.71
SMC1A-202ENST00000375340 LINC00476Q8WZB0 136 aa4.37□□□□□ -1.71
SMC1A-202ENST00000375340 C1orf64Q8NEQ6 169 aa4.36□□□□□ -1.71
SMC1A-202ENST00000375340 C19orf73Q9NVV2 129 aa4.36□□□□□ -1.71
SMC1A-202ENST00000375340 RPS28P62857 69 aaKnown RBP4.36□□□□□ -1.71
SMC1A-202ENST00000375340 MGAM2Q2M2H8 2515 aa4.36□□□□□ -1.71
SMC1A-202ENST00000375340 C15orf56Q8N910 161 aa4.36□□□□□ -1.71
SMC1A-202ENST00000375340 IGSF10Q6WRI0 2623 aa4.36□□□□□ -1.71
SMC1A-202ENST00000375340 PMAIP1Q13794 54 aa4.35□□□□□ -1.71
SMC1A-202ENST00000375340 IGLV5-52A0A0A0MRZ9 124 aa4.35□□□□□ -1.71
SMC1A-202ENST00000375340 LINC00588Q9Y4M8 146 aa4.35□□□□□ -1.71
SMC1A-202ENST00000375340 GVQW2A0A096LPI5 108 aaPredicted RBP4.35□□□□□ -1.71
SMC1A-202ENST00000375340 SETXQ7Z333 2677 aaKnown RBP4.35□□□□□ -1.71
SMC1A-202ENST00000375340 K7EQZ3 153 aa4.35□□□□□ -1.71
SMC1A-202ENST00000375340 PRO0628Q9UI54 55 aa4.34□□□□□ -1.71
SMC1A-202ENST00000375340 MGAQ8IWI9 3026 aa4.34□□□□□ -1.71
SMC1A-202ENST00000375340 KRTAP1-3Q8IUG1 177 aa4.34□□□□□ -1.71
SMC1A-202ENST00000375340 NBEAQ8NFP9 2946 aa4.34□□□□□ -1.71
SMC1A-202ENST00000375340 NOTCH1P46531 2555 aa4.34□□□□□ -1.71
SMC1A-202ENST00000375340 NBEAL1Q6ZS30 2694 aa4.34□□□□□ -1.71
SMC1A-202ENST00000375340 EPM2AB3EWF7 344 aa4.34□□□□□ -1.72
SMC1A-202ENST00000375340 WDFY4Q6ZS81 3184 aa4.33□□□□□ -1.72
SMC1A-202ENST00000375340 NUPR2A6NF83 97 aa4.33□□□□□ -1.72
SMC1A-202ENST00000375340 OBSCN-AS1Q96MR7 158 aa4.32□□□□□ -1.72
SMC1A-202ENST00000375340 Q8NBF4 154 aa4.32□□□□□ -1.72
SMC1A-202ENST00000375340 TEX15Q9BXT5 2789 aa4.32□□□□□ -1.72
SMC1A-202ENST00000375340 MOBPQ13875 183 aa4.32□□□□□ -1.72
SMC1A-202ENST00000375340 CYSTM1Q9H1C7 97 aa4.32□□□□□ -1.72
SMC1A-202ENST00000375340 ASPMQ8IZT6 3477 aa4.31□□□□□ -1.72
SMC1A-202ENST00000375340 LINC00612Q8N6U2 182 aa4.31□□□□□ -1.72
SMC1A-202ENST00000375340 hDV103S1A0JD37 113 aa4.31□□□□□ -1.72
SMC1A-202ENST00000375340 BCE1O60756 84 aa4.31□□□□□ -1.72
SMC1A-202ENST00000375340 CASC10Q5T4H9 136 aa4.31□□□□□ -1.72
SMC1A-202ENST00000375340 IGLV1-50A0A075B6I6 118 aa4.31□□□□□ -1.72
SMC1A-202ENST00000375340 LINC00528Q8N1L1 170 aa4.31□□□□□ -1.72
SMC1A-202ENST00000375340 H3BNG1 76 aa4.3□□□□□ -1.72
SMC1A-202ENST00000375340 MDFIQ99750 246 aa4.3□□□□□ -1.72
SMC1A-202ENST00000375340 LRBAP50851 2863 aa4.3□□□□□ -1.72
SMC1A-202ENST00000375340 KRTAP24-1Q3LI83 254 aa4.3□□□□□ -1.72
SMC1A-202ENST00000375340 SPAG11AQ6PDA7 123 aa4.3□□□□□ -1.72
SMC1A-202ENST00000375340 H7BZZ5 65 aa4.3□□□□□ -1.72
SMC1A-202ENST00000375340 SPINK1P00995 79 aa4.3□□□□□ -1.72
SMC1A-202ENST00000375340 ZFHX4Q86UP3 3567 aa4.29□□□□□ -1.72
SMC1A-202ENST00000375340 Q8N377 158 aa4.29□□□□□ -1.72
SMC1A-202ENST00000375340 KCNQ1DNQ9H478 68 aa4.29□□□□□ -1.72
SMC1A-202ENST00000375340 PRR34Q9NV39 138 aa4.29□□□□□ -1.72
SMC1A-202ENST00000375340 COL6A5A8TX70 2615 aa4.29□□□□□ -1.72
SMC1A-202ENST00000375340 C16orf90A8MZG2 172 aa4.29□□□□□ -1.72
SMC1A-202ENST00000375340 Q8NDZ9 215 aa4.29□□□□□ -1.72
SMC1A-202ENST00000375340 IGFL1Q6UW32 110 aa4.29□□□□□ -1.72
SMC1A-202ENST00000375340 FRYQ5TBA9 3013 aa4.29□□□□□ -1.72
SMC1A-202ENST00000375340 TRBV7-4A0A0J9YYF1 115 aa4.28□□□□□ -1.72
SMC1A-202ENST00000375340 TNRC18O15417 2968 aaPredicted RBP4.28□□□□□ -1.72
SMC1A-202ENST00000375340 TEP1Q99973 2627 aaKnown RBP4.28□□□□□ -1.72
SMC1A-202ENST00000375340 DNAH10OSP0CZ25 163 aa4.28□□□□□ -1.72
SMC1A-202ENST00000375340 KRTAP1-1Q07627 177 aa4.28□□□□□ -1.72
SMC1A-202ENST00000375340 LINC01600Q96MT4 127 aa4.28□□□□□ -1.73
SMC1A-202ENST00000375340 ITPR1Q14643 2758 aa4.27□□□□□ -1.73
SMC1A-202ENST00000375340 ERC2-IT1O76042 136 aa4.27□□□□□ -1.73
SMC1A-202ENST00000375340 TACC2O95359 2948 aa4.27□□□□□ -1.73
SMC1A-202ENST00000375340 LINC00336Q6ZUF6 198 aa4.26□□□□□ -1.73
SMC1A-202ENST00000375340 C1orf134Q5TEV5 83 aa4.26□□□□□ -1.73
SMC1A-202ENST00000375340 KLKP1Q107X0 134 aa4.26□□□□□ -1.73
SMC1A-202ENST00000375340 BOD1L1Q8NFC6 3051 aa4.26□□□□□ -1.73
SMC1A-202ENST00000375340 RTL8CO15255 209 aa4.25□□□□□ -1.73
SMC1A-202ENST00000375340 SMG1Q96Q15 3661 aaKnown RBP4.25□□□□□ -1.73
SMC1A-202ENST00000375340 NBEAL2Q6ZNJ1 2754 aa4.25□□□□□ -1.73
SMC1A-202ENST00000375340 IGKV2D-30A0A075B6S6 120 aa4.25□□□□□ -1.73
SMC1A-202ENST00000375340 IGKV2-30P06310 120 aa4.25□□□□□ -1.73
SMC1A-202ENST00000375340 C7orf65Q6ZTY9 151 aa4.25□□□□□ -1.73
SMC1A-202ENST00000375340 LIMD2Q9BT23 127 aa4.25□□□□□ -1.73
SMC1A-202ENST00000375340 A8MWP4 228 aa4.24□□□□□ -1.73
SMC1A-202ENST00000375340 STAB1Q9NY15 2570 aa4.24□□□□□ -1.73
SMC1A-202ENST00000375340 A8MUN3 132 aa4.24□□□□□ -1.73
SMC1A-202ENST00000375340 FAM229BQ4G0N7 80 aa4.23□□□□□ -1.73
SMC1A-202ENST00000375340 COA5Q86WW8 74 aa4.23□□□□□ -1.73
SMC1A-202ENST00000375340 BAHCC1Q9P281 2608 aa4.23□□□□□ -1.73
SMC1A-202ENST00000375340 UTP20O75691 2785 aaKnown RBP4.23□□□□□ -1.73
SMC1A-202ENST00000375340 TRAV22A0A0B4J277 110 aa4.23□□□□□ -1.73
SMC1A-202ENST00000375340 ANAPC11Q9NYG5 84 aa4.23□□□□□ -1.73
SMC1A-202ENST00000375340 NBDYA0A0U1RRE5 68 aa4.23□□□□□ -1.73
SMC1A-202ENST00000375340 A0A1B0GW54 56 aa4.23□□□□□ -1.73
SMC1A-202ENST00000375340 A0A1W2PNM2 257 aa4.22□□□□□ -1.73
SMC1A-202ENST00000375340 ITPR2Q14571 2701 aa4.22□□□□□ -1.73
SMC1A-202ENST00000375340 SPACA4Q8TDM5 124 aa4.22□□□□□ -1.73
SMC1A-202ENST00000375340 ZZEF1O43149 2961 aa4.22□□□□□ -1.73
SMC1A-202ENST00000375340 TP53AIP1Q9HCN2 124 aa4.21□□□□□ -1.73
SMC1A-202ENST00000375340 Q5XG85 94 aa4.21□□□□□ -1.74
SMC1A-202ENST00000375340 CSMD1Q96PZ7 3565 aa4.21□□□□□ -1.74
SMC1A-202ENST00000375340 IGLV8-61A0A075B6I0 122 aa4.21□□□□□ -1.74
SMC1A-202ENST00000375340 DCHS1Q96JQ0 3298 aa4.21□□□□□ -1.74
SMC1A-202ENST00000375340 K7EIL1 84 aa4.21□□□□□ -1.74
SMC1A-202ENST00000375340 PRR15Q8IV56 129 aa4.2□□□□□ -1.74
SMC1A-202ENST00000375340 KALRNO60229 2985 aa4.2□□□□□ -1.74
SMC1A-202ENST00000375340 UBR5O95071 2799 aaPredicted RBP4.2□□□□□ -1.74
SMC1A-202ENST00000375340 DSCR10P59022 87 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms