RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 MIR22HGQ0VDD5 57 aa4.96□□□□□ -1.62
SYNE1-208ENST00000367256 H3BS24 57 aa4.96□□□□□ -1.62
SYNE1-208ENST00000367256 FAM168BA1KXE4 195 aa4.95□□□□□ -1.62
SYNE1-208ENST00000367256 FLNAP21333 2647 aaKnown RBP4.95□□□□□ -1.62
SYNE1-208ENST00000367256 COX6B2Q6YFQ2 88 aa4.95□□□□□ -1.62
SYNE1-208ENST00000367256 NBDYA0A0U1RRE5 68 aa4.94□□□□□ -1.62
SYNE1-208ENST00000367256 A8MUN3 132 aa4.94□□□□□ -1.62
SYNE1-208ENST00000367256 A0A1W2PPR1 153 aa4.94□□□□□ -1.62
SYNE1-208ENST00000367256 DMBT1Q9UGM3 2413 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-208ENST00000367256 SPANXA2-OT1Q8N9U9 137 aa4.93□□□□□ -1.62
SYNE1-208ENST00000367256 ASB16-AS1Q495Z4 193 aa4.92□□□□□ -1.62
SYNE1-208ENST00000367256 H7BZZ5 65 aa4.92□□□□□ -1.62
SYNE1-208ENST00000367256 MRPL34Q9BQ48 92 aaKnown RBP4.92□□□□□ -1.62
SYNE1-208ENST00000367256 KCNQ1DNQ9H478 68 aa4.92□□□□□ -1.62
SYNE1-208ENST00000367256 OBSCN-AS1Q96MR7 158 aa4.92□□□□□ -1.62
SYNE1-208ENST00000367256 Q1T7F1 81 aa4.91□□□□□ -1.62
SYNE1-208ENST00000367256 LINC00588Q9Y4M8 146 aa4.91□□□□□ -1.62
SYNE1-208ENST00000367256 DSCR10P59022 87 aa4.91□□□□□ -1.62
SYNE1-208ENST00000367256 NBEAL1Q6ZS30 2694 aa4.9□□□□□ -1.62
SYNE1-208ENST00000367256 CDC42SE1Q9NRR8 79 aa4.9□□□□□ -1.62
SYNE1-208ENST00000367256 J3QL48 77 aa4.9□□□□□ -1.62
SYNE1-208ENST00000367256 STAB1Q9NY15 2570 aa4.9□□□□□ -1.63
SYNE1-208ENST00000367256 LINC00528Q8N1L1 170 aa4.9□□□□□ -1.63
SYNE1-208ENST00000367256 LINC00304Q8N9R0 145 aa4.89□□□□□ -1.63
SYNE1-208ENST00000367256 DNAH10OSP0CZ25 163 aa4.89□□□□□ -1.63
SYNE1-208ENST00000367256 C9orf129Q5T035 196 aaKnown RBP4.89□□□□□ -1.63
SYNE1-208ENST00000367256 Q8NAQ8 132 aa4.89□□□□□ -1.63
SYNE1-208ENST00000367256 C9orf92A6NGG3 77 aa4.89□□□□□ -1.63
SYNE1-208ENST00000367256 A0A1B0GVX0 72 aa4.88□□□□□ -1.63
SYNE1-208ENST00000367256 IGFL1Q6UW32 110 aa4.88□□□□□ -1.63
SYNE1-208ENST00000367256 C8orf17Q9NRJ1 99 aa4.88□□□□□ -1.63
SYNE1-208ENST00000367256 NOTCH1P46531 2555 aa4.88□□□□□ -1.63
SYNE1-208ENST00000367256 A0A0D9SG42 100 aa4.87□□□□□ -1.63
SYNE1-208ENST00000367256 CENPFP49454 3210 aa4.87□□□□□ -1.63
SYNE1-208ENST00000367256 IGLV1-50A0A075B6I6 118 aa4.86□□□□□ -1.63
SYNE1-208ENST00000367256 PLA2G2DQ9UNK4 145 aa4.86□□□□□ -1.63
SYNE1-208ENST00000367256 ITPR3Q14573 2671 aa4.86□□□□□ -1.63
SYNE1-208ENST00000367256 SEC61BP60468 96 aaKnown RBP4.86□□□□□ -1.63
SYNE1-208ENST00000367256 RBM12B-AS1Q9P1G2 102 aa4.85□□□□□ -1.63
SYNE1-208ENST00000367256 UBR5O95071 2799 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-208ENST00000367256 LINC01554Q52M75 96 aa4.84□□□□□ -1.63
SYNE1-208ENST00000367256 LUZP6Q538Z0 58 aa4.84□□□□□ -1.63
SYNE1-208ENST00000367256 PRR34Q9NV39 138 aa4.83□□□□□ -1.64
SYNE1-208ENST00000367256 HELZ2Q9BYK8 2649 aaKnown RBP4.83□□□□□ -1.64
SYNE1-208ENST00000367256 TLX1NBP0CAT3 122 aa4.82□□□□□ -1.64
SYNE1-208ENST00000367256 CHD6Q8TD26 2715 aa4.82□□□□□ -1.64
SYNE1-208ENST00000367256 BAHCC1Q9P281 2608 aa4.81□□□□□ -1.64
SYNE1-208ENST00000367256 CFAP46Q8IYW2 2715 aa4.81□□□□□ -1.64
SYNE1-208ENST00000367256 FAM104AQ969W3 186 aa4.81□□□□□ -1.64
SYNE1-208ENST00000367256 C15orf56Q8N910 161 aa4.81□□□□□ -1.64
SYNE1-208ENST00000367256 IGLV5-37A0A075B6J1 123 aa4.81□□□□□ -1.64
SYNE1-208ENST00000367256 LINC00483Q53H64 154 aa4.8□□□□□ -1.64
SYNE1-208ENST00000367256 GCN1Q92616 2671 aaKnown RBP4.8□□□□□ -1.64
SYNE1-208ENST00000367256 Q8N1X5 172 aa4.8□□□□□ -1.64
SYNE1-208ENST00000367256 ZNF861PO60384 105 aa4.8□□□□□ -1.64
SYNE1-208ENST00000367256 IGLV5-48A0A075B6I7 105 aa4.79□□□□□ -1.64
SYNE1-208ENST00000367256 CSNK1G2-AS1Q8NCQ2 148 aa4.79□□□□□ -1.64
SYNE1-208ENST00000367256 Q8N377 158 aa4.79□□□□□ -1.64
SYNE1-208ENST00000367256 LINC00612Q8N6U2 182 aa4.79□□□□□ -1.64
SYNE1-208ENST00000367256 WWC2-AS2Q96NR7 200 aa4.78□□□□□ -1.64
SYNE1-208ENST00000367256 UNC79Q9P2D8 2635 aa4.78□□□□□ -1.64
SYNE1-208ENST00000367256 A0A0G2JQZ4 141 aa4.78□□□□□ -1.64
SYNE1-208ENST00000367256 A0A1W2PNN7 141 aa4.78□□□□□ -1.64
SYNE1-208ENST00000367256 KRTAP24-1Q3LI83 254 aa4.78□□□□□ -1.64
SYNE1-208ENST00000367256 OCR1Q9BZK8 76 aa4.77□□□□□ -1.65
SYNE1-208ENST00000367256 CAMK2N1Q7Z7J9 78 aa4.77□□□□□ -1.65
SYNE1-208ENST00000367256 DMAC1Q96GE9 116 aa4.76□□□□□ -1.65
SYNE1-208ENST00000367256 A0A0A0MQY5 61 aa4.76□□□□□ -1.65
SYNE1-208ENST00000367256 Q75L30 129 aa4.76□□□□□ -1.65
SYNE1-208ENST00000367256 COL6A5A8TX70 2615 aa4.76□□□□□ -1.65
SYNE1-208ENST00000367256 A0A087X002 238 aa4.75□□□□□ -1.65
SYNE1-208ENST00000367256 ANAPC11Q9NYG5 84 aa4.75□□□□□ -1.65
SYNE1-208ENST00000367256 ZNF575Q86XF7 245 aa4.74□□□□□ -1.65
SYNE1-208ENST00000367256 KRTAP10-11P60412 298 aa4.74□□□□□ -1.65
SYNE1-208ENST00000367256 SPRR4Q96PI1 79 aa4.74□□□□□ -1.65
SYNE1-208ENST00000367256 IGLV7-43P04211 117 aa4.73□□□□□ -1.65
SYNE1-208ENST00000367256 CNBPP62633 177 aaKnown RBP4.72□□□□□ -1.65
SYNE1-208ENST00000367256 STAB2Q8WWQ8 2551 aa4.72□□□□□ -1.65
SYNE1-208ENST00000367256 A0A087WTM6 91 aa4.71□□□□□ -1.65
SYNE1-208ENST00000367256 TEP1Q99973 2627 aaKnown RBP4.71□□□□□ -1.66
SYNE1-208ENST00000367256 TEX15Q9BXT5 2789 aa4.71□□□□□ -1.66
SYNE1-208ENST00000367256 A0A1W2PNM2 257 aa4.71□□□□□ -1.66
SYNE1-208ENST00000367256 PSORS1C2Q9UIG4 136 aa4.71□□□□□ -1.66
SYNE1-208ENST00000367256 IGLV7-46A0A075B6I9 117 aa4.7□□□□□ -1.66
SYNE1-208ENST00000367256 SMR3BP02814 79 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-208ENST00000367256 MAP1AP78559 2803 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-208ENST00000367256 Q5XG85 94 aa4.69□□□□□ -1.66
SYNE1-208ENST00000367256 PRR26Q8N8Z3 221 aa4.69□□□□□ -1.66
SYNE1-208ENST00000367256 A0A1B0GU33 70 aa4.69□□□□□ -1.66
SYNE1-208ENST00000367256 K7EIL1 84 aa4.69□□□□□ -1.66
SYNE1-208ENST00000367256 C9orf163Q8N9P6 203 aa4.69□□□□□ -1.66
SYNE1-208ENST00000367256 KMT2BQ9UMN6 2715 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-208ENST00000367256 GIG44P09565 113 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-208ENST00000367256 KRTAP16-1A8MUX0 517 aa4.66□□□□□ -1.66
SYNE1-208ENST00000367256 C19orf73Q9NVV2 129 aa4.66□□□□□ -1.66
SYNE1-208ENST00000367256 LINC01558Q9Y6Z2 57 aa4.66□□□□□ -1.66
SYNE1-208ENST00000367256 Q6ZSA8 131 aa4.66□□□□□ -1.66
SYNE1-208ENST00000367256 UTP20O75691 2785 aaKnown RBP4.65□□□□□ -1.66
SYNE1-208ENST00000367256 S4R3F8 94 aa4.64□□□□□ -1.67
SYNE1-208ENST00000367256 Q8N9P0 234 aaPredicted RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms