RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 KLK12Q9UKR0 248 aa2.55□□□□□ -2
SYNE1-207ENST00000367255 WFDC10BQ8IUB3 73 aa2.55□□□□□ -2
SYNE1-207ENST00000367255 ANKRD17O75179 2603 aaKnown RBP2.55□□□□□ -2
SYNE1-207ENST00000367255 SPINK1P00995 79 aa2.54□□□□□ -2
SYNE1-207ENST00000367255 SRCAPQ6ZRS2 3230 aa2.54□□□□□ -2
SYNE1-207ENST00000367255 Q5VV11 94 aa2.54□□□□□ -2
SYNE1-207ENST00000367255 A0A087WSZ3 146 aa2.54□□□□□ -2
SYNE1-207ENST00000367255 GCN1Q92616 2671 aaKnown RBP2.54□□□□□ -2
SYNE1-207ENST00000367255 PRR26Q8N8Z3 221 aa2.53□□□□□ -2
SYNE1-207ENST00000367255 COA5Q86WW8 74 aa2.53□□□□□ -2
SYNE1-207ENST00000367255 PLA2G1BP04054 148 aaKnown RBP2.53□□□□□ -2
SYNE1-207ENST00000367255 PCOTHQ58A44 107 aa2.53□□□□□ -2.01
SYNE1-207ENST00000367255 HECTD1Q9ULT8 2610 aa2.53□□□□□ -2.01
SYNE1-207ENST00000367255 UNQ6190/PRO20217Q6UXQ8 127 aa2.52□□□□□ -2.01
SYNE1-207ENST00000367255 PP632Q6XCG6 107 aa2.52□□□□□ -2.01
SYNE1-207ENST00000367255 NSD1Q96L73 2696 aaPredicted RBP2.52□□□□□ -2.01
SYNE1-207ENST00000367255 MIR22HGQ0VDD5 57 aa2.52□□□□□ -2.01
SYNE1-207ENST00000367255 ODF3L2Q3SX64 289 aa2.52□□□□□ -2.01
SYNE1-207ENST00000367255 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.52□□□□□ -2.01
SYNE1-207ENST00000367255 MAP1AP78559 2803 aaPredicted RBP2.52□□□□□ -2.01
SYNE1-207ENST00000367255 SPRR1AP35321 89 aa2.52□□□□□ -2.01
SYNE1-207ENST00000367255 ITPR3Q14573 2671 aa2.52□□□□□ -2.01
SYNE1-207ENST00000367255 SMR3AQ99954 134 aa2.52□□□□□ -2.01
SYNE1-207ENST00000367255 RAI1Q7Z5J4 1906 aaPredicted RBP2.52□□□□□ -2.01
SYNE1-207ENST00000367255 IGLV7-43P04211 117 aa2.52□□□□□ -2.01
SYNE1-207ENST00000367255 Q6ZR54 194 aa2.51□□□□□ -2.01
SYNE1-207ENST00000367255 SETXQ7Z333 2677 aaKnown RBP2.51□□□□□ -2.01
SYNE1-207ENST00000367255 FP248Q71RG6 208 aaPredicted RBP2.51□□□□□ -2.01
SYNE1-207ENST00000367255 EP400Q96L91 3159 aa2.51□□□□□ -2.01
SYNE1-207ENST00000367255 COL5A1P20908 1838 aaPredicted RBP2.51□□□□□ -2.01
SYNE1-207ENST00000367255 IGKV2-28A0A075B6P5 120 aa2.5□□□□□ -2.01
SYNE1-207ENST00000367255 IGKV2D-28P01615 120 aa2.5□□□□□ -2.01
SYNE1-207ENST00000367255 SPINK6Q6UWN8 80 aa2.5□□□□□ -2.01
SYNE1-207ENST00000367255 NOTCH1P46531 2555 aa2.5□□□□□ -2.01
SYNE1-207ENST00000367255 A0A1B0GVX0 72 aa2.5□□□□□ -2.01
SYNE1-207ENST00000367255 IGKV2-24A0A0C4DH68 120 aa2.5□□□□□ -2.01
SYNE1-207ENST00000367255 CEP350Q5VT06 3117 aa2.49□□□□□ -2.01
SYNE1-207ENST00000367255 COL4A2P08572 1712 aa2.49□□□□□ -2.01
SYNE1-207ENST00000367255 HELZ2Q9BYK8 2649 aaKnown RBP2.49□□□□□ -2.01
SYNE1-207ENST00000367255 TEP1Q99973 2627 aaKnown RBP2.49□□□□□ -2.01
SYNE1-207ENST00000367255 LINC00313P59037 77 aa2.49□□□□□ -2.01
SYNE1-207ENST00000367255 ZNF292O60281 2723 aa2.48□□□□□ -2.01
SYNE1-207ENST00000367255 NIPBLQ6KC79 2804 aaeCLIP2.48□□□□□ -2.01
SYNE1-207ENST00000367255 BBC3Q96PG8 261 aaPredicted RBP2.48□□□□□ -2.01
SYNE1-207ENST00000367255 LINC00483Q53H64 154 aa2.48□□□□□ -2.01
SYNE1-207ENST00000367255 Q8N9P0 234 aaPredicted RBP2.48□□□□□ -2.01
SYNE1-207ENST00000367255 FAM218AQ96MZ4 157 aa2.48□□□□□ -2.01
SYNE1-207ENST00000367255 J3QKU1 62 aa2.48□□□□□ -2.01
SYNE1-207ENST00000367255 ZCCHC13Q8WW36 166 aaKnown RBP2.48□□□□□ -2.01
SYNE1-207ENST00000367255 LINC00476Q8WZB0 136 aa2.47□□□□□ -2.01
SYNE1-207ENST00000367255 C9orf163Q8N9P6 203 aa2.47□□□□□ -2.01
SYNE1-207ENST00000367255 TNRC6BQ9UPQ9 1833 aaKnown RBP2.47□□□□□ -2.01
SYNE1-207ENST00000367255 GOLGB1Q14789 3259 aaKnown RBP2.47□□□□□ -2.01
SYNE1-207ENST00000367255 CENPFP49454 3210 aa2.47□□□□□ -2.01
SYNE1-207ENST00000367255 KRTAP10-9P60411 292 aa2.46□□□□□ -2.02
SYNE1-207ENST00000367255 SPATA8Q6RVD6 105 aa2.46□□□□□ -2.02
SYNE1-207ENST00000367255 ROMO1P60602 79 aa2.46□□□□□ -2.02
SYNE1-207ENST00000367255 PRO3102Q9H379 93 aa2.46□□□□□ -2.02
SYNE1-207ENST00000367255 C8orf17Q9NRJ1 99 aa2.45□□□□□ -2.02
SYNE1-207ENST00000367255 C9orf129Q5T035 196 aaKnown RBP2.45□□□□□ -2.02
SYNE1-207ENST00000367255 A6NN06 94 aa2.45□□□□□ -2.02
SYNE1-207ENST00000367255 LTBP2Q14767 1821 aa2.45□□□□□ -2.02
SYNE1-207ENST00000367255 ZNF861PO60384 105 aa2.44□□□□□ -2.02
SYNE1-207ENST00000367255 M0QZ58 72 aa2.44□□□□□ -2.02
SYNE1-207ENST00000367255 FLG2Q5D862 2391 aaPredicted RBP2.44□□□□□ -2.02
SYNE1-207ENST00000367255 HRES1P13985 223 aa2.44□□□□□ -2.02
SYNE1-207ENST00000367255 DEFB135Q30KP9 77 aa2.44□□□□□ -2.02
SYNE1-207ENST00000367255 IGLV9-49A0A0B4J1Y8 123 aa2.44□□□□□ -2.02
SYNE1-207ENST00000367255 KRTAP16-1A8MUX0 517 aa2.44□□□□□ -2.02
SYNE1-207ENST00000367255 ST20-AS1Q8NBB2 130 aa2.44□□□□□ -2.02
SYNE1-207ENST00000367255 DMBT1Q9UGM3 2413 aaPredicted RBP2.43□□□□□ -2.02
SYNE1-207ENST00000367255 PSORS1C2Q9UIG4 136 aa2.43□□□□□ -2.02
SYNE1-207ENST00000367255 PRAC1Q96KF2 57 aa2.42□□□□□ -2.02
SYNE1-207ENST00000367255 CASC10Q5T4H9 136 aa2.42□□□□□ -2.02
SYNE1-207ENST00000367255 STAB2Q8WWQ8 2551 aa2.42□□□□□ -2.02
SYNE1-207ENST00000367255 CSNK1G2-AS1Q8NCQ2 148 aa2.42□□□□□ -2.02
SYNE1-207ENST00000367255 LINC00472Q9H8W2 130 aa2.41□□□□□ -2.02
SYNE1-207ENST00000367255 CFAP46Q8IYW2 2715 aa2.41□□□□□ -2.02
SYNE1-207ENST00000367255 CIRBP-AS1Q8TBR5 109 aa2.41□□□□□ -2.02
SYNE1-207ENST00000367255 IGFL1Q6UW32 110 aa2.41□□□□□ -2.02
SYNE1-207ENST00000367255 PCNTO95613 3336 aa2.41□□□□□ -2.02
SYNE1-207ENST00000367255 A0A1B0GU33 70 aa2.4□□□□□ -2.02
SYNE1-207ENST00000367255 PRRC2CQ9Y520 2896 aaKnown RBP2.4□□□□□ -2.02
SYNE1-207ENST00000367255 PRLHP81277 87 aa2.4□□□□□ -2.03
SYNE1-207ENST00000367255 CHD6Q8TD26 2715 aa2.4□□□□□ -2.03
SYNE1-207ENST00000367255 KRTAP29-1A8MX34 341 aaPredicted RBP2.4□□□□□ -2.03
SYNE1-207ENST00000367255 CYSTM1Q9H1C7 97 aa2.4□□□□□ -2.03
SYNE1-207ENST00000367255 Q8N377 158 aa2.39□□□□□ -2.03
SYNE1-207ENST00000367255 DNAH12Q6ZR08 3092 aa2.39□□□□□ -2.03
SYNE1-207ENST00000367255 A0A1W2PPR1 153 aa2.39□□□□□ -2.03
SYNE1-207ENST00000367255 CR1P17927 2039 aa2.39□□□□□ -2.03
SYNE1-207ENST00000367255 RPL37P61927 97 aaKnown RBP2.39□□□□□ -2.03
SYNE1-207ENST00000367255 C1orf134Q5TEV5 83 aa2.39□□□□□ -2.03
SYNE1-207ENST00000367255 FAM168BA1KXE4 195 aa2.39□□□□□ -2.03
SYNE1-207ENST00000367255 MUC22E2RYF6 1773 aaPredicted RBP2.38□□□□□ -2.03
SYNE1-207ENST00000367255 DSCR10P59022 87 aa2.37□□□□□ -2.03
SYNE1-207ENST00000367255 UTRNP46939 3433 aa2.37□□□□□ -2.03
SYNE1-207ENST00000367255 A0A1W2PNM2 257 aa2.37□□□□□ -2.03
SYNE1-207ENST00000367255 C19orf73Q9NVV2 129 aa2.37□□□□□ -2.03
SYNE1-207ENST00000367255 NBDYA0A0U1RRE5 68 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms