RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 FAM236CP0DP71 79 aa9.53□□□□□ -0.88
CPSF7-201ENST00000340437 NREPQ16612 68 aa9.52□□□□□ -0.89
CPSF7-201ENST00000340437 F8WEM9 126 aa9.52□□□□□ -0.89
CPSF7-201ENST00000340437 BPY2O14599 106 aa9.52□□□□□ -0.89
CPSF7-201ENST00000340437 C15orf56Q8N910 161 aa9.52□□□□□ -0.89
CPSF7-201ENST00000340437 TRAV7A0A075B6U4 112 aa9.51□□□□□ -0.89
CPSF7-201ENST00000340437 IGKV2-24A0A0C4DH68 120 aa9.51□□□□□ -0.89
CPSF7-201ENST00000340437 NDUFC2-KCTD14E9PQ53 114 aa9.51□□□□□ -0.89
CPSF7-201ENST00000340437 EGFEM1PQ0D2K5 195 aa9.51□□□□□ -0.89
CPSF7-201ENST00000340437 C11orf45Q8TAV5 145 aa9.51□□□□□ -0.89
CPSF7-201ENST00000340437 PDE6GP18545 87 aa9.5□□□□□ -0.89
CPSF7-201ENST00000340437 SYCNQ0VAF6 134 aa9.5□□□□□ -0.89
CPSF7-201ENST00000340437 GVQW2A0A096LPI5 108 aaPredicted RBP9.49□□□□□ -0.89
CPSF7-201ENST00000340437 PSCAO43653 123 aa9.49□□□□□ -0.89
CPSF7-201ENST00000340437 RPS28P62857 69 aaKnown RBP9.49□□□□□ -0.89
CPSF7-201ENST00000340437 SERTAD4-AS1Q5TG53 156 aa9.49□□□□□ -0.89
CPSF7-201ENST00000340437 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.48□□□□□ -0.89
CPSF7-201ENST00000340437 TRBV7-4A0A0J9YYF1 115 aa9.48□□□□□ -0.89
CPSF7-201ENST00000340437 FAM168BA1KXE4 195 aa9.48□□□□□ -0.89
CPSF7-201ENST00000340437 UBE2DNLQ8IWF7 75 aa9.47□□□□□ -0.89
CPSF7-201ENST00000340437 KRTAP10-11P60412 298 aa9.47□□□□□ -0.89
CPSF7-201ENST00000340437 LINC00528Q8N1L1 170 aa9.46□□□□□ -0.89
CPSF7-201ENST00000340437 H7BZZ5 65 aa9.46□□□□□ -0.9
CPSF7-201ENST00000340437 C7orf33Q8WU49 177 aa9.45□□□□□ -0.9
CPSF7-201ENST00000340437 C5orf47Q569G3 176 aa9.45□□□□□ -0.9
CPSF7-201ENST00000340437 CXCL6P80162 114 aa9.45□□□□□ -0.9
CPSF7-201ENST00000340437 A0A096LNI7 61 aa9.44□□□□□ -0.9
CPSF7-201ENST00000340437 KRTAP24-1Q3LI83 254 aa9.44□□□□□ -0.9
CPSF7-201ENST00000340437 CASC10Q5T4H9 136 aa9.44□□□□□ -0.9
CPSF7-201ENST00000340437 ST20-AS1Q8NBB2 130 aa9.44□□□□□ -0.9
CPSF7-201ENST00000340437 A0A0G2JQZ4 141 aa9.43□□□□□ -0.9
CPSF7-201ENST00000340437 A0A1W2PNN7 141 aa9.43□□□□□ -0.9
CPSF7-201ENST00000340437 KRTAP26-1Q6PEX3 210 aa9.43□□□□□ -0.9
CPSF7-201ENST00000340437 ETDCA0A1B0GVM5 59 aa9.42□□□□□ -0.9
CPSF7-201ENST00000340437 UBE2BP63146 152 aa9.41□□□□□ -0.9
CPSF7-201ENST00000340437 H3BQ85 93 aa9.41□□□□□ -0.9
CPSF7-201ENST00000340437 FAM30AQ9NZY2 134 aa9.41□□□□□ -0.9
CPSF7-201ENST00000340437 Q8N377 158 aa9.4□□□□□ -0.91
CPSF7-201ENST00000340437 DEFB116Q30KQ4 102 aa9.38□□□□□ -0.91
CPSF7-201ENST00000340437 Q5XG85 94 aa9.38□□□□□ -0.91
CPSF7-201ENST00000340437 TMEM254Q8TBM7 123 aa9.38□□□□□ -0.91
CPSF7-201ENST00000340437 FUSP35637 526 aaKnown RBP eCLIP9.37□□□□□ -0.91
CPSF7-201ENST00000340437 LINC00474Q9P2X8 69 aa9.36□□□□□ -0.91
CPSF7-201ENST00000340437 HIGD2AQ9BW72 106 aa9.36□□□□□ -0.91
CPSF7-201ENST00000340437 TRBV7-6A0A0J9YX20 115 aa9.36□□□□□ -0.91
CPSF7-201ENST00000340437 IGKV4-1P06312 121 aa9.36□□□□□ -0.91
CPSF7-201ENST00000340437 MPLKIPQ8TAP9 179 aa9.36□□□□□ -0.91
CPSF7-201ENST00000340437 KLKP1Q107X0 134 aa9.35□□□□□ -0.91
CPSF7-201ENST00000340437 LINC01556Q5JQF7 62 aa9.35□□□□□ -0.91
CPSF7-201ENST00000340437 C1orf137Q5JT78 98 aa9.35□□□□□ -0.91
CPSF7-201ENST00000340437 SERP1Q9Y6X1 66 aa9.35□□□□□ -0.91
CPSF7-201ENST00000340437 ERC2-IT1O76042 136 aa9.34□□□□□ -0.91
CPSF7-201ENST00000340437 LRCOL1A6NCL2 159 aa9.34□□□□□ -0.91
CPSF7-201ENST00000340437 SMIM29Q86T20 159 aa9.33□□□□□ -0.92
CPSF7-201ENST00000340437 Q9BRP9 147 aa9.33□□□□□ -0.92
CPSF7-201ENST00000340437 KCNQ1DNQ9H478 68 aa9.33□□□□□ -0.92
CPSF7-201ENST00000340437 PRR4Q16378 134 aa9.31□□□□□ -0.92
CPSF7-201ENST00000340437 LINC00588Q9Y4M8 146 aa9.31□□□□□ -0.92
CPSF7-201ENST00000340437 A0A1W2PNM2 257 aa9.31□□□□□ -0.92
CPSF7-201ENST00000340437 Q6ZRX8 168 aa9.3□□□□□ -0.92
CPSF7-201ENST00000340437 H3BNG1 76 aa9.3□□□□□ -0.92
CPSF7-201ENST00000340437 BCE1O60756 84 aa9.29□□□□□ -0.92
CPSF7-201ENST00000340437 PRLHP81277 87 aa9.28□□□□□ -0.92
CPSF7-201ENST00000340437 DHRS4-AS1Q9P1J3 65 aa9.28□□□□□ -0.92
CPSF7-201ENST00000340437 PRYO14603 147 aa9.27□□□□□ -0.92
CPSF7-201ENST00000340437 MRPL55Q7Z7F7 128 aaKnown RBP9.27□□□□□ -0.93
CPSF7-201ENST00000340437 CSMD3Q7Z407 3707 aa9.27□□□□□ -0.93
CPSF7-201ENST00000340437 IGLV1-50A0A075B6I6 118 aa9.27□□□□□ -0.93
CPSF7-201ENST00000340437 SRRM2Q9UQ35 2752 aaKnown RBP9.25□□□□□ -0.93
CPSF7-201ENST00000340437 LINC00336Q6ZUF6 198 aa9.25□□□□□ -0.93
CPSF7-201ENST00000340437 WFDC13Q8IUB5 93 aa9.25□□□□□ -0.93
CPSF7-201ENST00000340437 K7EQZ3 153 aa9.24□□□□□ -0.93
CPSF7-201ENST00000340437 OCR1Q9BZK8 76 aa9.24□□□□□ -0.93
CPSF7-201ENST00000340437 ANK2Q01484 3957 aa9.24□□□□□ -0.93
CPSF7-201ENST00000340437 SMIM26A0A096LP01 95 aa9.24□□□□□ -0.93
CPSF7-201ENST00000340437 DNAH10OSP0CZ25 163 aa9.24□□□□□ -0.93
CPSF7-201ENST00000340437 FP248Q71RG6 208 aaPredicted RBP9.24□□□□□ -0.93
CPSF7-201ENST00000340437 FAM229BQ4G0N7 80 aa9.24□□□□□ -0.93
CPSF7-201ENST00000340437 NDUFC1O43677 76 aa9.23□□□□□ -0.93
CPSF7-201ENST00000340437 KRTAP7-1Q8IUC3 87 aa9.23□□□□□ -0.93
CPSF7-201ENST00000340437 IGLV5-48A0A075B6I7 105 aa9.22□□□□□ -0.93
CPSF7-201ENST00000340437 EPM2AB3EWF7 344 aa9.21□□□□□ -0.93
CPSF7-201ENST00000340437 WIPF1O43516 503 aa9.21□□□□□ -0.93
CPSF7-201ENST00000340437 REG3GQ6UW15 175 aa9.21□□□□□ -0.93
CPSF7-201ENST00000340437 Q8NBF4 154 aa9.21□□□□□ -0.93
CPSF7-201ENST00000340437 BRK1Q8WUW1 75 aa9.21□□□□□ -0.93
CPSF7-201ENST00000340437 RPL37AP61513 92 aaKnown RBP9.2□□□□□ -0.94
CPSF7-201ENST00000340437 LINC00476Q8WZB0 136 aa9.2□□□□□ -0.94
CPSF7-201ENST00000340437 A0A087WSZ3 146 aa9.19□□□□□ -0.94
CPSF7-201ENST00000340437 A0A0U1RQV1 116 aa9.19□□□□□ -0.94
CPSF7-201ENST00000340437 PKIGQ9Y2B9 76 aa9.18□□□□□ -0.94
CPSF7-201ENST00000340437 CHTF8P0CG12 524 aa9.18□□□□□ -0.94
CPSF7-201ENST00000340437 DSCR10P59022 87 aa9.17□□□□□ -0.94
CPSF7-201ENST00000340437 KRTAP4-16G5E9R7 235 aaPredicted RBP9.17□□□□□ -0.94
CPSF7-201ENST00000340437 TGP01266 2768 aa9.16□□□□□ -0.94
CPSF7-201ENST00000340437 TLX1NBP0CAT3 122 aa9.15□□□□□ -0.95
CPSF7-201ENST00000340437 F8WDY8 70 aa9.14□□□□□ -0.95
CPSF7-201ENST00000340437 UBE2AP49459 152 aa9.14□□□□□ -0.95
CPSF7-201ENST00000340437 IGFL1Q6UW32 110 aa9.14□□□□□ -0.95
CPSF7-201ENST00000340437 PHF5AQ7RTV0 110 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms