RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 FUSP35637 526 aaKnown RBP eCLIP8.98□□□□□ -0.97
CCDC88C-201ENST00000331194 INAFM1C9JVW0 142 aa8.98□□□□□ -0.97
CCDC88C-201ENST00000331194 PRYO14603 147 aa8.98□□□□□ -0.97
CCDC88C-201ENST00000331194 COX7BP24311 80 aa8.98□□□□□ -0.97
CCDC88C-201ENST00000331194 PRR15Q8IV56 129 aa8.98□□□□□ -0.97
CCDC88C-201ENST00000331194 OCR1Q9BZK8 76 aa8.98□□□□□ -0.97
CCDC88C-201ENST00000331194 IGLV1-51P01701 117 aa8.97□□□□□ -0.97
CCDC88C-201ENST00000331194 PSPHP1O15172 72 aa8.97□□□□□ -0.97
CCDC88C-201ENST00000331194 Q6ZTC4 211 aa8.97□□□□□ -0.97
CCDC88C-201ENST00000331194 C6orf48Q9UBA6 75 aa8.96□□□□□ -0.97
CCDC88C-201ENST00000331194 LINC00612Q8N6U2 182 aa8.96□□□□□ -0.98
CCDC88C-201ENST00000331194 FAM30AQ9NZY2 134 aa8.96□□□□□ -0.98
CCDC88C-201ENST00000331194 DEFB105AQ8NG35 78 aa8.95□□□□□ -0.98
CCDC88C-201ENST00000331194 X6R8D5 127 aa8.94□□□□□ -0.98
CCDC88C-201ENST00000331194 A0A0J9YWU9 116 aa8.94□□□□□ -0.98
CCDC88C-201ENST00000331194 IGHV4-30-4P0DP06 118 aa8.94□□□□□ -0.98
CCDC88C-201ENST00000331194 NBEAL1Q6ZS30 2694 aa8.94□□□□□ -0.98
CCDC88C-201ENST00000331194 HTN3P15516 51 aa8.94□□□□□ -0.98
CCDC88C-201ENST00000331194 ELOF1P60002 83 aaKnown RBP8.94□□□□□ -0.98
CCDC88C-201ENST00000331194 HIGD2BQ4VC39 106 aa8.94□□□□□ -0.98
CCDC88C-201ENST00000331194 Q6ZRU5 148 aa8.94□□□□□ -0.98
CCDC88C-201ENST00000331194 PRB2P02812 416 aaPredicted RBP8.92□□□□□ -0.98
CCDC88C-201ENST00000331194 CMC4P56277 68 aaPredicted RBP8.91□□□□□ -0.98
CCDC88C-201ENST00000331194 CD164Q04900 197 aa8.91□□□□□ -0.98
CCDC88C-201ENST00000331194 SMIM29Q86T20 159 aa8.91□□□□□ -0.98
CCDC88C-201ENST00000331194 PRR4Q16378 134 aa8.9□□□□□ -0.98
CCDC88C-201ENST00000331194 A8MU10 97 aa8.9□□□□□ -0.98
CCDC88C-201ENST00000331194 Q6ZRP5 223 aa8.89□□□□□ -0.99
CCDC88C-201ENST00000331194 ERC2-IT1O76042 136 aa8.89□□□□□ -0.99
CCDC88C-201ENST00000331194 DEFB135Q30KP9 77 aa8.89□□□□□ -0.99
CCDC88C-201ENST00000331194 VPREB1P12018 145 aa8.88□□□□□ -0.99
CCDC88C-201ENST00000331194 LINC00528Q8N1L1 170 aa8.87□□□□□ -0.99
CCDC88C-201ENST00000331194 H3BQ85 93 aa8.86□□□□□ -0.99
CCDC88C-201ENST00000331194 KRTAP10-3P60369 221 aa8.86□□□□□ -0.99
CCDC88C-201ENST00000331194 MRPL55Q7Z7F7 128 aaKnown RBP8.86□□□□□ -0.99
CCDC88C-201ENST00000331194 C1orf64Q8NEQ6 169 aa8.85□□□□□ -0.99
CCDC88C-201ENST00000331194 CAMK2N2Q96S95 79 aa8.85□□□□□ -0.99
CCDC88C-201ENST00000331194 hDV103S1A0JD37 113 aa8.84□□□□□ -0.99
CCDC88C-201ENST00000331194 MGAM2Q2M2H8 2515 aa8.82□□□□□ -1
CCDC88C-201ENST00000331194 GVQW2A0A096LPI5 108 aaPredicted RBP8.82□□□□□ -1
CCDC88C-201ENST00000331194 Q8N377 158 aa8.82□□□□□ -1
CCDC88C-201ENST00000331194 ANK2Q01484 3957 aa8.82□□□□□ -1
CCDC88C-201ENST00000331194 TRAV22A0A0B4J277 110 aa8.82□□□□□ -1
CCDC88C-201ENST00000331194 M0R378 163 aa8.82□□□□□ -1
CCDC88C-201ENST00000331194 PRR34Q9NV39 138 aa8.82□□□□□ -1
CCDC88C-201ENST00000331194 Q1T7F1 81 aa8.8□□□□□ -1
CCDC88C-201ENST00000331194 A8MUN3 132 aa8.8□□□□□ -1
CCDC88C-201ENST00000331194 KPRPQ5T749 579 aaPredicted RBP8.8□□□□□ -1
CCDC88C-201ENST00000331194 A0A1W2PNM2 257 aa8.79□□□□□ -1
CCDC88C-201ENST00000331194 LELP1Q5T871 98 aa8.79□□□□□ -1
CCDC88C-201ENST00000331194 ST20-AS1Q8NBB2 130 aa8.79□□□□□ -1
CCDC88C-201ENST00000331194 A0A0G2JQZ4 141 aa8.78□□□□□ -1
CCDC88C-201ENST00000331194 A0A1W2PNN7 141 aa8.78□□□□□ -1
CCDC88C-201ENST00000331194 LYRM9A8MSI8 78 aa8.78□□□□□ -1
CCDC88C-201ENST00000331194 RBM12B-AS1Q9P1G2 102 aa8.78□□□□□ -1
CCDC88C-201ENST00000331194 DEFB116Q30KQ4 102 aa8.77□□□□□ -1.01
CCDC88C-201ENST00000331194 WFDC10BQ8IUB3 73 aa8.77□□□□□ -1.01
CCDC88C-201ENST00000331194 SPTSSBQ8NFR3 76 aa8.77□□□□□ -1.01
CCDC88C-201ENST00000331194 K7EQZ3 153 aa8.76□□□□□ -1.01
CCDC88C-201ENST00000331194 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.76□□□□□ -1.01
CCDC88C-201ENST00000331194 RPL37AP8A6NKH3 93 aa8.76□□□□□ -1.01
CCDC88C-201ENST00000331194 SERTAD4-AS1Q5TG53 156 aa8.76□□□□□ -1.01
CCDC88C-201ENST00000331194 DSCR10P59022 87 aa8.75□□□□□ -1.01
CCDC88C-201ENST00000331194 SYCNQ0VAF6 134 aa8.74□□□□□ -1.01
CCDC88C-201ENST00000331194 EGFEM1PQ0D2K5 195 aa8.74□□□□□ -1.01
CCDC88C-201ENST00000331194 C15orf56Q8N910 161 aa8.74□□□□□ -1.01
CCDC88C-201ENST00000331194 TENM3Q9P273 2699 aa8.73□□□□□ -1.01
CCDC88C-201ENST00000331194 IGLV5-48A0A075B6I7 105 aa8.73□□□□□ -1.01
CCDC88C-201ENST00000331194 ZCCHC13Q8WW36 166 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-201ENST00000331194 C1orf137Q5JT78 98 aa8.72□□□□□ -1.01
CCDC88C-201ENST00000331194 C7orf33Q8WU49 177 aa8.72□□□□□ -1.01
CCDC88C-201ENST00000331194 LCE6AA0A183 80 aa8.71□□□□□ -1.01
CCDC88C-201ENST00000331194 SRRM2Q9UQ35 2752 aaKnown RBP8.71□□□□□ -1.01
CCDC88C-201ENST00000331194 ETDCA0A1B0GVM5 59 aa8.71□□□□□ -1.01
CCDC88C-201ENST00000331194 KRTAP26-1Q6PEX3 210 aa8.71□□□□□ -1.01
CCDC88C-201ENST00000331194 KTN1-AS1Q86SY8 53 aa8.71□□□□□ -1.01
CCDC88C-201ENST00000331194 Q8NAQ8 132 aa8.71□□□□□ -1.01
CCDC88C-201ENST00000331194 Q9BRP9 147 aa8.71□□□□□ -1.01
CCDC88C-201ENST00000331194 FAM168BA1KXE4 195 aa8.7□□□□□ -1.02
CCDC88C-201ENST00000331194 NKAPP1Q8N9T2 125 aa8.7□□□□□ -1.02
CCDC88C-201ENST00000331194 CHKB-CPT1BH3BT56 60 aa8.69□□□□□ -1.02
CCDC88C-201ENST00000331194 C11orf45Q8TAV5 145 aa8.69□□□□□ -1.02
CCDC88C-201ENST00000331194 LINC00588Q9Y4M8 146 aa8.68□□□□□ -1.02
CCDC88C-201ENST00000331194 PSCAO43653 123 aa8.68□□□□□ -1.02
CCDC88C-201ENST00000331194 UBE2BP63146 152 aa8.68□□□□□ -1.02
CCDC88C-201ENST00000331194 WFDC13Q8IUB5 93 aa8.68□□□□□ -1.02
CCDC88C-201ENST00000331194 SPART-AS1P0CW21 52 aa8.67□□□□□ -1.02
CCDC88C-201ENST00000331194 KCNQ1DNQ9H478 68 aa8.67□□□□□ -1.02
CCDC88C-201ENST00000331194 C4orf48Q5BLP8 95 aa8.67□□□□□ -1.02
CCDC88C-201ENST00000331194 Q5VV11 94 aa8.67□□□□□ -1.02
CCDC88C-201ENST00000331194 Q8NBF4 154 aa8.67□□□□□ -1.02
CCDC88C-201ENST00000331194 IGKV2D-24A0A075B6R9 120 aa8.65□□□□□ -1.02
CCDC88C-201ENST00000331194 C16orf90A8MZG2 172 aa8.65□□□□□ -1.02
CCDC88C-201ENST00000331194 TNP2Q05952 138 aa8.65□□□□□ -1.03
CCDC88C-201ENST00000331194 OXLD1Q5BKU9 147 aa8.64□□□□□ -1.03
CCDC88C-201ENST00000331194 Q6ZRX8 168 aa8.64□□□□□ -1.03
CCDC88C-201ENST00000331194 HCG22E2RYF7 251 aa8.63□□□□□ -1.03
CCDC88C-201ENST00000331194 CSMD3Q7Z407 3707 aa8.63□□□□□ -1.03
CCDC88C-201ENST00000331194 RPL37AP61513 92 aaKnown RBP8.63□□□□□ -1.03
CCDC88C-201ENST00000331194 APOC4P55056 127 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms