RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 KMT2BQ9UMN6 2715 aaPredicted RBP9.77□□□□□ -0.84
COL7A1-201ENST00000328333 SPACA4Q8TDM5 124 aa9.76□□□□□ -0.85
COL7A1-201ENST00000328333 IGLV8-61A0A075B6I0 122 aa9.76□□□□□ -0.85
COL7A1-201ENST00000328333 LITAFQ99732 161 aa9.76□□□□□ -0.85
COL7A1-201ENST00000328333 EDN2P20800 178 aa9.75□□□□□ -0.85
COL7A1-201ENST00000328333 LUZP6Q538Z0 58 aa9.75□□□□□ -0.85
COL7A1-201ENST00000328333 MRPL34Q9BQ48 92 aaKnown RBP9.75□□□□□ -0.85
COL7A1-201ENST00000328333 Q1T7F1 81 aa9.74□□□□□ -0.85
COL7A1-201ENST00000328333 K7EQZ3 153 aa9.74□□□□□ -0.85
COL7A1-201ENST00000328333 MAP1AP78559 2803 aaPredicted RBP9.74□□□□□ -0.85
COL7A1-201ENST00000328333 KCNQ1DNQ9H478 68 aa9.72□□□□□ -0.85
COL7A1-201ENST00000328333 AVPP01185 164 aa9.69□□□□□ -0.86
COL7A1-201ENST00000328333 ST20-AS1Q8NBB2 130 aa9.69□□□□□ -0.86
COL7A1-201ENST00000328333 TEP1Q99973 2627 aaKnown RBP9.66□□□□□ -0.86
COL7A1-201ENST00000328333 C10orf142B7Z368 130 aa9.66□□□□□ -0.86
COL7A1-201ENST00000328333 DNAH10OSP0CZ25 163 aa9.66□□□□□ -0.86
COL7A1-201ENST00000328333 A0A1B0GVX0 72 aa9.65□□□□□ -0.86
COL7A1-201ENST00000328333 LINC00528Q8N1L1 170 aa9.65□□□□□ -0.87
COL7A1-201ENST00000328333 TYMSOSQ8TAI1 123 aa9.64□□□□□ -0.87
COL7A1-201ENST00000328333 KLK9Q2XQG4 91 aa9.63□□□□□ -0.87
COL7A1-201ENST00000328333 Q96NJ1 140 aa9.62□□□□□ -0.87
COL7A1-201ENST00000328333 ZNF292O60281 2723 aa9.59□□□□□ -0.87
COL7A1-201ENST00000328333 C8orf17Q9NRJ1 99 aa9.59□□□□□ -0.87
COL7A1-201ENST00000328333 PRO3102Q9H379 93 aa9.58□□□□□ -0.88
COL7A1-201ENST00000328333 PLA2G2DQ9UNK4 145 aa9.57□□□□□ -0.88
COL7A1-201ENST00000328333 APLNQ9ULZ1 77 aa9.56□□□□□ -0.88
COL7A1-201ENST00000328333 Q75L30 129 aa9.56□□□□□ -0.88
COL7A1-201ENST00000328333 IGFL1Q6UW32 110 aa9.56□□□□□ -0.88
COL7A1-201ENST00000328333 LINC01554Q52M75 96 aa9.56□□□□□ -0.88
COL7A1-201ENST00000328333 IGLV1-50A0A075B6I6 118 aa9.54□□□□□ -0.88
COL7A1-201ENST00000328333 RTL8CO15255 209 aa9.54□□□□□ -0.88
COL7A1-201ENST00000328333 OBSCN-AS1Q96MR7 158 aa9.53□□□□□ -0.88
COL7A1-201ENST00000328333 NBDYA0A0U1RRE5 68 aa9.53□□□□□ -0.88
COL7A1-201ENST00000328333 FAM104AQ969W3 186 aa9.53□□□□□ -0.88
COL7A1-201ENST00000328333 ITPR2Q14571 2701 aa9.52□□□□□ -0.89
COL7A1-201ENST00000328333 Q8NAQ8 132 aa9.51□□□□□ -0.89
COL7A1-201ENST00000328333 C15orf56Q8N910 161 aa9.51□□□□□ -0.89
COL7A1-201ENST00000328333 PHF5AQ7RTV0 110 aaKnown RBP9.51□□□□□ -0.89
COL7A1-201ENST00000328333 TLX1NBP0CAT3 122 aa9.5□□□□□ -0.89
COL7A1-201ENST00000328333 C9orf129Q5T035 196 aaKnown RBP9.5□□□□□ -0.89
COL7A1-201ENST00000328333 UTP20O75691 2785 aaKnown RBP9.49□□□□□ -0.89
COL7A1-201ENST00000328333 CDSNQ15517 529 aa9.49□□□□□ -0.89
COL7A1-201ENST00000328333 PRR34Q9NV39 138 aa9.49□□□□□ -0.89
COL7A1-201ENST00000328333 APCP25054 2843 aa9.48□□□□□ -0.89
COL7A1-201ENST00000328333 LINC00483Q53H64 154 aa9.48□□□□□ -0.89
COL7A1-201ENST00000328333 DMAC1Q96GE9 116 aa9.46□□□□□ -0.89
COL7A1-201ENST00000328333 RBM12B-AS1Q9P1G2 102 aa9.46□□□□□ -0.9
COL7A1-201ENST00000328333 OCR1Q9BZK8 76 aa9.45□□□□□ -0.9
COL7A1-201ENST00000328333 LINC00304Q8N9R0 145 aa9.44□□□□□ -0.9
COL7A1-201ENST00000328333 Q8N377 158 aa9.44□□□□□ -0.9
COL7A1-201ENST00000328333 A0A0A0MQY5 61 aa9.44□□□□□ -0.9
COL7A1-201ENST00000328333 CHTF8P0CG12 524 aa9.44□□□□□ -0.9
COL7A1-201ENST00000328333 LINC00588Q9Y4M8 146 aa9.44□□□□□ -0.9
COL7A1-201ENST00000328333 ZNF861PO60384 105 aa9.44□□□□□ -0.9
COL7A1-201ENST00000328333 SETXQ7Z333 2677 aaKnown RBP9.43□□□□□ -0.9
COL7A1-201ENST00000328333 EP400Q96L91 3159 aa9.42□□□□□ -0.9
COL7A1-201ENST00000328333 FAM168BA1KXE4 195 aa9.42□□□□□ -0.9
COL7A1-201ENST00000328333 IGLV5-48A0A075B6I7 105 aa9.41□□□□□ -0.9
COL7A1-201ENST00000328333 SMR3AQ99954 134 aa9.41□□□□□ -0.9
COL7A1-201ENST00000328333 A0A1W2PPR1 153 aa9.4□□□□□ -0.9
COL7A1-201ENST00000328333 NSD1Q96L73 2696 aaPredicted RBP9.37□□□□□ -0.91
COL7A1-201ENST00000328333 IGLV7-46A0A075B6I9 117 aa9.37□□□□□ -0.91
COL7A1-201ENST00000328333 CSNK1G2-AS1Q8NCQ2 148 aa9.37□□□□□ -0.91
COL7A1-201ENST00000328333 ITPR1Q14643 2758 aa9.36□□□□□ -0.91
COL7A1-201ENST00000328333 H3BS24 57 aa9.35□□□□□ -0.91
COL7A1-201ENST00000328333 DSCR10P59022 87 aa9.35□□□□□ -0.91
COL7A1-201ENST00000328333 SPRR4Q96PI1 79 aa9.35□□□□□ -0.91
COL7A1-201ENST00000328333 ASB16-AS1Q495Z4 193 aa9.34□□□□□ -0.92
COL7A1-201ENST00000328333 CEP350Q5VT06 3117 aa9.32□□□□□ -0.92
COL7A1-201ENST00000328333 COX6B2Q6YFQ2 88 aa9.32□□□□□ -0.92
COL7A1-201ENST00000328333 CNBPP62633 177 aaKnown RBP9.31□□□□□ -0.92
COL7A1-201ENST00000328333 IGLV5-37A0A075B6J1 123 aa9.3□□□□□ -0.92
COL7A1-201ENST00000328333 A0A1B0GU33 70 aa9.3□□□□□ -0.92
COL7A1-201ENST00000328333 KRTAP10-9P60411 292 aa9.29□□□□□ -0.92
COL7A1-201ENST00000328333 LINC00612Q8N6U2 182 aa9.28□□□□□ -0.92
COL7A1-201ENST00000328333 NBEAL2Q6ZNJ1 2754 aa9.28□□□□□ -0.92
COL7A1-201ENST00000328333 SRCAPQ6ZRS2 3230 aa9.28□□□□□ -0.92
COL7A1-201ENST00000328333 EIF4EBP3O60516 100 aaPredicted RBP9.25□□□□□ -0.93
COL7A1-201ENST00000328333 LINC01558Q9Y6Z2 57 aa9.24□□□□□ -0.93
COL7A1-201ENST00000328333 A0A0D9SG42 100 aa9.23□□□□□ -0.93
COL7A1-201ENST00000328333 Q5XG85 94 aa9.23□□□□□ -0.93
COL7A1-201ENST00000328333 C9orf163Q8N9P6 203 aa9.22□□□□□ -0.93
COL7A1-201ENST00000328333 A0A1W2PNM2 257 aa9.22□□□□□ -0.93
COL7A1-201ENST00000328333 IGSF10Q6WRI0 2623 aa9.22□□□□□ -0.93
COL7A1-201ENST00000328333 Q8N9P0 234 aaPredicted RBP9.22□□□□□ -0.93
COL7A1-201ENST00000328333 A0A0C4DFX4 3053 aa9.19□□□□□ -0.94
COL7A1-201ENST00000328333 IGLV7-43P04211 117 aa9.19□□□□□ -0.94
COL7A1-201ENST00000328333 TNP2Q05952 138 aa9.19□□□□□ -0.94
COL7A1-201ENST00000328333 DNAH12Q6ZR08 3092 aa9.17□□□□□ -0.94
COL7A1-201ENST00000328333 Q8N1X5 172 aa9.15□□□□□ -0.94
COL7A1-201ENST00000328333 UBR5O95071 2799 aaPredicted RBP9.14□□□□□ -0.95
COL7A1-201ENST00000328333 WWC2-AS2Q96NR7 200 aa9.14□□□□□ -0.95
COL7A1-201ENST00000328333 Q5VV11 94 aa9.13□□□□□ -0.95
COL7A1-201ENST00000328333 FP248Q71RG6 208 aaPredicted RBP9.13□□□□□ -0.95
COL7A1-201ENST00000328333 HRES1P13985 223 aa9.12□□□□□ -0.95
COL7A1-201ENST00000328333 J3QL48 77 aa9.12□□□□□ -0.95
COL7A1-201ENST00000328333 FAM229BQ4G0N7 80 aa9.12□□□□□ -0.95
COL7A1-201ENST00000328333 C9orf92A6NGG3 77 aa9.12□□□□□ -0.95
COL7A1-201ENST00000328333 PRR26Q8N8Z3 221 aa9.11□□□□□ -0.95
COL7A1-201ENST00000328333 PSORS1C2Q9UIG4 136 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms