RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 B9D2Q9BPU9 175 aa15.48■□□□□ 0.07
TRIM54-201ENST00000296098 UBE2DNLQ8IWF7 75 aa15.47■□□□□ 0.07
TRIM54-201ENST00000296098 TRBV7-4A0A0J9YYF1 115 aa15.46■□□□□ 0.07
TRIM54-201ENST00000296098 M0R2N4 97 aa15.46■□□□□ 0.07
TRIM54-201ENST00000296098 PRYO14603 147 aa15.46■□□□□ 0.07
TRIM54-201ENST00000296098 APLNQ9ULZ1 77 aa15.46■□□□□ 0.07
TRIM54-201ENST00000296098 IGLV1-50A0A075B6I6 118 aa15.44■□□□□ 0.06
TRIM54-201ENST00000296098 RPL37AP8A6NKH3 93 aa15.44■□□□□ 0.06
TRIM54-201ENST00000296098 KRTAP7-1Q8IUC3 87 aa15.44■□□□□ 0.06
TRIM54-201ENST00000296098 B5MCH6 92 aa15.43■□□□□ 0.06
TRIM54-201ENST00000296098 A0A087WVE0 104 aa15.42■□□□□ 0.06
TRIM54-201ENST00000296098 FAM19A5Q7Z5A7 132 aaPredicted RBP15.42■□□□□ 0.06
TRIM54-201ENST00000296098 STAB2Q8WWQ8 2551 aa15.41■□□□□ 0.06
TRIM54-201ENST00000296098 Q6ZRX8 168 aa15.41■□□□□ 0.06
TRIM54-201ENST00000296098 ATOX1O00244 68 aa15.4■□□□□ 0.06
TRIM54-201ENST00000296098 MRPL55Q7Z7F7 128 aaKnown RBP15.4■□□□□ 0.06
TRIM54-201ENST00000296098 COL7A1Q02388 2944 aa15.4■□□□□ 0.06
TRIM54-201ENST00000296098 KRTAP4-16G5E9R7 235 aaPredicted RBP15.39■□□□□ 0.05
TRIM54-201ENST00000296098 PSCAO43653 123 aa15.39■□□□□ 0.05
TRIM54-201ENST00000296098 SPRR1AP35321 89 aa15.39■□□□□ 0.05
TRIM54-201ENST00000296098 DHRS4-AS1Q9P1J3 65 aa15.39■□□□□ 0.05
TRIM54-201ENST00000296098 DNAH9Q9NYC9 4486 aa15.39■□□□□ 0.05
TRIM54-201ENST00000296098 ETDCA0A1B0GVM5 59 aa15.38■□□□□ 0.05
TRIM54-201ENST00000296098 Q6ZVQ6 151 aa15.36■□□□□ 0.05
TRIM54-201ENST00000296098 CNBPP62633 177 aaKnown RBP15.36■□□□□ 0.05
TRIM54-201ENST00000296098 Q9BRP9 147 aa15.34■□□□□ 0.05
TRIM54-201ENST00000296098 DEFB105AQ8NG35 78 aa15.33■□□□□ 0.04
TRIM54-201ENST00000296098 Q8N377 158 aa15.32■□□□□ 0.04
TRIM54-201ENST00000296098 C3orf22Q8N5N4 141 aa15.32■□□□□ 0.04
TRIM54-201ENST00000296098 UQCRQO14949 82 aa15.31■□□□□ 0.04
TRIM54-201ENST00000296098 FAM19A1Q7Z5A9 133 aa15.31■□□□□ 0.04
TRIM54-201ENST00000296098 A0A096LNI7 61 aa15.31■□□□□ 0.04
TRIM54-201ENST00000296098 LINC01547P58512 204 aaPredicted RBP15.31■□□□□ 0.04
TRIM54-201ENST00000296098 C16orf90A8MZG2 172 aa15.3■□□□□ 0.04
TRIM54-201ENST00000296098 C14orf177Q52M58 125 aa15.29■□□□□ 0.04
TRIM54-201ENST00000296098 NUPR2A6NF83 97 aa15.29■□□□□ 0.04
TRIM54-201ENST00000296098 COX7CP15954 63 aa15.29■□□□□ 0.04
TRIM54-201ENST00000296098 HAMPP81172 84 aa15.29■□□□□ 0.04
TRIM54-201ENST00000296098 DYNC2H1Q8NCM8 4307 aaKnown RBP15.28■□□□□ 0.04
TRIM54-201ENST00000296098 REG3GQ6UW15 175 aa15.27■□□□□ 0.04
TRIM54-201ENST00000296098 IGKV2-24A0A0C4DH68 120 aa15.27■□□□□ 0.03
TRIM54-201ENST00000296098 SS18L2Q9UHA2 77 aa15.27■□□□□ 0.03
TRIM54-201ENST00000296098 C9orf153Q5TBE3 101 aa15.26■□□□□ 0.03
TRIM54-201ENST00000296098 SVIPQ8NHG7 77 aa15.26■□□□□ 0.03
TRIM54-201ENST00000296098 LYSTQ99698 3801 aa15.26■□□□□ 0.03
TRIM54-201ENST00000296098 IGLV2-33A0A075B6J2 118 aaPredicted RBP15.25■□□□□ 0.03
TRIM54-201ENST00000296098 CXCL6P80162 114 aa15.25■□□□□ 0.03
TRIM54-201ENST00000296098 IGLV5-48A0A075B6I7 105 aa15.23■□□□□ 0.03
TRIM54-201ENST00000296098 UBE2BP63146 152 aa15.23■□□□□ 0.03
TRIM54-201ENST00000296098 ST20-AS1Q8NBB2 130 aa15.22■□□□□ 0.03
TRIM54-201ENST00000296098 NBDYA0A0U1RRE5 68 aa15.21■□□□□ 0.03
TRIM54-201ENST00000296098 SERP2Q8N6R1 65 aa15.21■□□□□ 0.03
TRIM54-201ENST00000296098 DNAH10Q8IVF4 4471 aa15.21■□□□□ 0.03
TRIM54-201ENST00000296098 A0A1W2PNN7 141 aa15.21■□□□□ 0.02
TRIM54-201ENST00000296098 ERC2-IT1O76042 136 aa15.2■□□□□ 0.02
TRIM54-201ENST00000296098 TNP2Q05952 138 aa15.16■□□□□ 0.02
TRIM54-201ENST00000296098 LRCOL1A6NCL2 159 aa15.15■□□□□ 0.02
TRIM54-201ENST00000296098 SCXQ7RTU7 201 aa15.14■□□□□ 0.01
TRIM54-201ENST00000296098 CRYGAP11844 174 aa15.14■□□□□ 0.01
TRIM54-201ENST00000296098 CSMD3Q7Z407 3707 aa15.14■□□□□ 0.01
TRIM54-201ENST00000296098 CHTF8P0CG12 524 aa15.12■□□□□ 0.01
TRIM54-201ENST00000296098 PKIGQ9Y2B9 76 aa15.12■□□□□ 0.01
TRIM54-201ENST00000296098 C3orf84H3BNL1 204 aa15.12■□□□□ 0.01
TRIM54-201ENST00000296098 C9orf163Q8N9P6 203 aa15.12■□□□□ 0.01
TRIM54-201ENST00000296098 FUSP35637 526 aaKnown RBP eCLIP15.11■□□□□ 0.01
TRIM54-201ENST00000296098 C1orf137Q5JT78 98 aa15.11■□□□□ 0.01
TRIM54-201ENST00000296098 Q6ZRN7 208 aaPredicted RBP15.11■□□□□ 0.01
TRIM54-201ENST00000296098 NREPQ16612 68 aa15.1■□□□□ 0.01
TRIM54-201ENST00000296098 PRLHP81277 87 aa15.09■□□□□ 0.01
TRIM54-201ENST00000296098 A0A1B0GW54 56 aa15.08■□□□□ 0
TRIM54-201ENST00000296098 DNAH7Q8WXX0 4024 aa15.07■□□□□ 0
TRIM54-201ENST00000296098 A0A1W2PNM2 257 aa15.07■□□□□ 0
TRIM54-201ENST00000296098 PLECQ15149 4684 aaKnown RBP15.07■□□□□ 0
TRIM54-201ENST00000296098 BCE1O60756 84 aa15.06■□□□□ 0
TRIM54-201ENST00000296098 PHF5AQ7RTV0 110 aaKnown RBP15.06■□□□□ 0
TRIM54-201ENST00000296098 Q8NBF4 154 aa15.05■□□□□ 0
TRIM54-201ENST00000296098 SMIM29Q86T20 159 aa15.04■□□□□ -0
TRIM54-201ENST00000296098 HIGD2AQ9BW72 106 aa15.03■□□□□ -0
TRIM54-201ENST00000296098 TENM2Q9NT68 2774 aa15.03■□□□□ -0
TRIM54-201ENST00000296098 F8WEM9 126 aa15.02■□□□□ -0
TRIM54-201ENST00000296098 LINC00474Q9P2X8 69 aa15.02■□□□□ -0
TRIM54-201ENST00000296098 KRTAP11-1Q8IUC1 163 aa15.01□□□□□ -0.01
TRIM54-201ENST00000296098 BPY2O14599 106 aa15□□□□□ -0.01
TRIM54-201ENST00000296098 SPRR4Q96PI1 79 aa14.99□□□□□ -0.01
TRIM54-201ENST00000296098 SMIM20Q8N5G0 67 aa14.99□□□□□ -0.01
TRIM54-201ENST00000296098 LINC00476Q8WZB0 136 aa14.99□□□□□ -0.01
TRIM54-201ENST00000296098 CYSTM1Q9H1C7 97 aa14.99□□□□□ -0.01
TRIM54-201ENST00000296098 TRAV7A0A075B6U4 112 aa14.97□□□□□ -0.01
TRIM54-201ENST00000296098 IGKV4-1P06312 121 aa14.97□□□□□ -0.01
TRIM54-201ENST00000296098 Q8N9L7 120 aa14.97□□□□□ -0.01
TRIM54-201ENST00000296098 H0Y9J4 135 aa14.96□□□□□ -0.01
TRIM54-201ENST00000296098 EPM2AB3EWF7 344 aa14.95□□□□□ -0.02
TRIM54-201ENST00000296098 PANO1I0J062 215 aa14.93□□□□□ -0.02
TRIM54-201ENST00000296098 STARD9Q9P2P6 4700 aa14.93□□□□□ -0.02
TRIM54-201ENST00000296098 PRKDCP78527 4128 aaKnown RBP14.93□□□□□ -0.02
TRIM54-201ENST00000296098 VPS13DQ5THJ4 4388 aa14.91□□□□□ -0.02
TRIM54-201ENST00000296098 IGFL1Q6UW32 110 aa14.91□□□□□ -0.02
TRIM54-201ENST00000296098 IGLV8-61A0A075B6I0 122 aa14.9□□□□□ -0.02
TRIM54-201ENST00000296098 A0A087WTM6 91 aa14.9□□□□□ -0.02
TRIM54-201ENST00000296098 UBE2AP49459 152 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms