RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 DSCR8Q96T75 97 aa13.05□□□□□ -0.32
VPS53-201ENST00000291074 FAM168BA1KXE4 195 aa13.04□□□□□ -0.32
VPS53-201ENST00000291074 LYSTQ99698 3801 aa13.04□□□□□ -0.32
VPS53-201ENST00000291074 C5orf47Q569G3 176 aa13.03□□□□□ -0.32
VPS53-201ENST00000291074 UBL5Q9BZL1 73 aa13.02□□□□□ -0.32
VPS53-201ENST00000291074 TLX1NBP0CAT3 122 aa13.01□□□□□ -0.33
VPS53-201ENST00000291074 RPL37AP8A6NKH3 93 aa13□□□□□ -0.33
VPS53-201ENST00000291074 H3BQ85 93 aa13□□□□□ -0.33
VPS53-201ENST00000291074 CRYGAP11844 174 aa12.99□□□□□ -0.33
VPS53-201ENST00000291074 KCNQ1DNQ9H478 68 aa12.99□□□□□ -0.33
VPS53-201ENST00000291074 FAM19A1Q7Z5A9 133 aa12.99□□□□□ -0.33
VPS53-201ENST00000291074 UPK3BQ9BT76 320 aa12.98□□□□□ -0.33
VPS53-201ENST00000291074 DNAH10Q8IVF4 4471 aa12.98□□□□□ -0.33
VPS53-201ENST00000291074 ATOX1O00244 68 aa12.97□□□□□ -0.33
VPS53-201ENST00000291074 KRTAP7-1Q8IUC3 87 aa12.97□□□□□ -0.33
VPS53-201ENST00000291074 RMI2Q96E14 147 aa12.97□□□□□ -0.33
VPS53-201ENST00000291074 TRBV7-4A0A0J9YYF1 115 aa12.97□□□□□ -0.33
VPS53-201ENST00000291074 OXTP01178 125 aa12.97□□□□□ -0.33
VPS53-201ENST00000291074 ATP5EP2Q5VTU8 51 aa12.96□□□□□ -0.33
VPS53-201ENST00000291074 KRTAP1-5Q9BYS1 174 aa12.96□□□□□ -0.33
VPS53-201ENST00000291074 DNAH9Q9NYC9 4486 aa12.94□□□□□ -0.34
VPS53-201ENST00000291074 Q6ZVQ6 151 aa12.94□□□□□ -0.34
VPS53-201ENST00000291074 GHRHP01286 108 aa12.94□□□□□ -0.34
VPS53-201ENST00000291074 PDE6GP18545 87 aa12.94□□□□□ -0.34
VPS53-201ENST00000291074 PLA2G2DQ9UNK4 145 aa12.94□□□□□ -0.34
VPS53-201ENST00000291074 DEFB105AQ8NG35 78 aa12.93□□□□□ -0.34
VPS53-201ENST00000291074 DPH3Q96FX2 82 aa12.92□□□□□ -0.34
VPS53-201ENST00000291074 HAMPP81172 84 aa12.91□□□□□ -0.34
VPS53-201ENST00000291074 TENM2Q9NT68 2774 aa12.91□□□□□ -0.34
VPS53-201ENST00000291074 IGLV1-50A0A075B6I6 118 aa12.9□□□□□ -0.34
VPS53-201ENST00000291074 LINC01547P58512 204 aaPredicted RBP12.9□□□□□ -0.34
VPS53-201ENST00000291074 C4orf26Q17RF5 130 aa12.9□□□□□ -0.34
VPS53-201ENST00000291074 IGLV5-37A0A075B6J1 123 aa12.89□□□□□ -0.35
VPS53-201ENST00000291074 KRTAP4-16G5E9R7 235 aaPredicted RBP12.88□□□□□ -0.35
VPS53-201ENST00000291074 Q9BRP9 147 aa12.88□□□□□ -0.35
VPS53-201ENST00000291074 RPS28P62857 69 aaKnown RBP12.88□□□□□ -0.35
VPS53-201ENST00000291074 Q6ZRX8 168 aa12.88□□□□□ -0.35
VPS53-201ENST00000291074 Q8N377 158 aa12.87□□□□□ -0.35
VPS53-201ENST00000291074 MDFIQ99750 246 aa12.87□□□□□ -0.35
VPS53-201ENST00000291074 PRYO14603 147 aa12.86□□□□□ -0.35
VPS53-201ENST00000291074 MRPL55Q7Z7F7 128 aaKnown RBP12.86□□□□□ -0.35
VPS53-201ENST00000291074 SERP2Q8N6R1 65 aa12.86□□□□□ -0.35
VPS53-201ENST00000291074 ETDCA0A1B0GVM5 59 aa12.85□□□□□ -0.35
VPS53-201ENST00000291074 SCXQ7RTU7 201 aa12.85□□□□□ -0.35
VPS53-201ENST00000291074 SPRR1AP35321 89 aa12.85□□□□□ -0.35
VPS53-201ENST00000291074 HRCT1Q6UXD1 115 aa12.85□□□□□ -0.35
VPS53-201ENST00000291074 CSMD3Q7Z407 3707 aa12.84□□□□□ -0.35
VPS53-201ENST00000291074 UBE2DNLQ8IWF7 75 aa12.84□□□□□ -0.35
VPS53-201ENST00000291074 ST20-AS1Q8NBB2 130 aa12.83□□□□□ -0.36
VPS53-201ENST00000291074 TMEM258P61165 79 aa12.83□□□□□ -0.36
VPS53-201ENST00000291074 APLNQ9ULZ1 77 aa12.83□□□□□ -0.36
VPS53-201ENST00000291074 DNAH7Q8WXX0 4024 aa12.82□□□□□ -0.36
VPS53-201ENST00000291074 DHRS4-AS1Q9P1J3 65 aa12.82□□□□□ -0.36
VPS53-201ENST00000291074 PSCAO43653 123 aa12.81□□□□□ -0.36
VPS53-201ENST00000291074 A0A096LNI7 61 aa12.81□□□□□ -0.36
VPS53-201ENST00000291074 IGKV2-24A0A0C4DH68 120 aa12.81□□□□□ -0.36
VPS53-201ENST00000291074 ERC2-IT1O76042 136 aa12.8□□□□□ -0.36
VPS53-201ENST00000291074 Q5XG85 94 aa12.79□□□□□ -0.36
VPS53-201ENST00000291074 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.78□□□□□ -0.36
VPS53-201ENST00000291074 CXCL6P80162 114 aa12.78□□□□□ -0.36
VPS53-201ENST00000291074 C3orf84H3BNL1 204 aa12.77□□□□□ -0.37
VPS53-201ENST00000291074 DYNC2H1Q8NCM8 4307 aaKnown RBP12.77□□□□□ -0.37
VPS53-201ENST00000291074 UBE2BP63146 152 aa12.76□□□□□ -0.37
VPS53-201ENST00000291074 IGLV5-48A0A075B6I7 105 aa12.75□□□□□ -0.37
VPS53-201ENST00000291074 A0A1W2PNN7 141 aa12.75□□□□□ -0.37
VPS53-201ENST00000291074 REG3GQ6UW15 175 aa12.75□□□□□ -0.37
VPS53-201ENST00000291074 B9D2Q9BPU9 175 aa12.75□□□□□ -0.37
VPS53-201ENST00000291074 PLECQ15149 4684 aaKnown RBP12.74□□□□□ -0.37
VPS53-201ENST00000291074 CNBPP62633 177 aaKnown RBP12.74□□□□□ -0.37
VPS53-201ENST00000291074 C16orf90A8MZG2 172 aa12.73□□□□□ -0.37
VPS53-201ENST00000291074 CHTF8P0CG12 524 aa12.71□□□□□ -0.38
VPS53-201ENST00000291074 Q8N9L7 120 aa12.71□□□□□ -0.38
VPS53-201ENST00000291074 TNP2Q05952 138 aa12.7□□□□□ -0.38
VPS53-201ENST00000291074 C20orf197Q8N268 126 aa12.69□□□□□ -0.38
VPS53-201ENST00000291074 A0A1W2PNM2 257 aa12.68□□□□□ -0.38
VPS53-201ENST00000291074 PRLHP81277 87 aa12.68□□□□□ -0.38
VPS53-201ENST00000291074 NREPQ16612 68 aa12.68□□□□□ -0.38
VPS53-201ENST00000291074 C1orf137Q5JT78 98 aa12.67□□□□□ -0.38
VPS53-201ENST00000291074 KRTAP11-1Q8IUC1 163 aa12.64□□□□□ -0.39
VPS53-201ENST00000291074 FUSP35637 526 aaKnown RBP eCLIP12.64□□□□□ -0.39
VPS53-201ENST00000291074 PHF5AQ7RTV0 110 aaKnown RBP12.63□□□□□ -0.39
VPS53-201ENST00000291074 BPY2O14599 106 aa12.63□□□□□ -0.39
VPS53-201ENST00000291074 SMIM29Q86T20 159 aa12.63□□□□□ -0.39
VPS53-201ENST00000291074 NBDYA0A0U1RRE5 68 aa12.62□□□□□ -0.39
VPS53-201ENST00000291074 C14orf177Q52M58 125 aa12.62□□□□□ -0.39
VPS53-201ENST00000291074 A0A0G2JQZ4 141 aa12.62□□□□□ -0.39
VPS53-201ENST00000291074 SRRM2Q9UQ35 2752 aaKnown RBP12.62□□□□□ -0.39
VPS53-201ENST00000291074 LRCOL1A6NCL2 159 aa12.61□□□□□ -0.39
VPS53-201ENST00000291074 IGKV4-1P06312 121 aa12.61□□□□□ -0.39
VPS53-201ENST00000291074 HIGD2AQ9BW72 106 aa12.61□□□□□ -0.39
VPS53-201ENST00000291074 TRAV7A0A075B6U4 112 aa12.61□□□□□ -0.39
VPS53-201ENST00000291074 Q8NBF4 154 aa12.61□□□□□ -0.39
VPS53-201ENST00000291074 PRKDCP78527 4128 aaKnown RBP12.6□□□□□ -0.39
VPS53-201ENST00000291074 STARD9Q9P2P6 4700 aa12.6□□□□□ -0.39
VPS53-201ENST00000291074 NUPR2A6NF83 97 aa12.59□□□□□ -0.39
VPS53-201ENST00000291074 BCE1O60756 84 aa12.58□□□□□ -0.4
VPS53-201ENST00000291074 LINC00476Q8WZB0 136 aa12.57□□□□□ -0.4
VPS53-201ENST00000291074 C9orf163Q8N9P6 203 aa12.57□□□□□ -0.4
VPS53-201ENST00000291074 FAM236DA0A1B0GTK5 79 aa12.56□□□□□ -0.4
VPS53-201ENST00000291074 FAM236CP0DP71 79 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms