RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 GIG44P09565 113 aaPredicted RBP12.5□□□□□ -0.41
SMPD3-201ENST00000219334 LINC00528Q8N1L1 170 aa12.49□□□□□ -0.41
SMPD3-201ENST00000219334 PRO0461Q9UI25 63 aa12.48□□□□□ -0.41
SMPD3-201ENST00000219334 LINC00612Q8N6U2 182 aa12.47□□□□□ -0.41
SMPD3-201ENST00000219334 IGLV8-61A0A075B6I0 122 aa12.45□□□□□ -0.42
SMPD3-201ENST00000219334 K7EQZ3 153 aa12.45□□□□□ -0.42
SMPD3-201ENST00000219334 IGFL1Q6UW32 110 aa12.45□□□□□ -0.42
SMPD3-201ENST00000219334 DSCR10P59022 87 aa12.44□□□□□ -0.42
SMPD3-201ENST00000219334 APLNQ9ULZ1 77 aa12.43□□□□□ -0.42
SMPD3-201ENST00000219334 C9orf129Q5T035 196 aaKnown RBP12.42□□□□□ -0.42
SMPD3-201ENST00000219334 TLX1NBP0CAT3 122 aa12.41□□□□□ -0.42
SMPD3-201ENST00000219334 C9orf92A6NGG3 77 aa12.41□□□□□ -0.42
SMPD3-201ENST00000219334 OBSCN-AS1Q96MR7 158 aa12.41□□□□□ -0.42
SMPD3-201ENST00000219334 MAST4O15021 2626 aa12.41□□□□□ -0.42
SMPD3-201ENST00000219334 KRTAP1-3Q8IUG1 177 aa12.4□□□□□ -0.42
SMPD3-201ENST00000219334 IGLV7-43P04211 117 aa12.4□□□□□ -0.42
SMPD3-201ENST00000219334 C8orf17Q9NRJ1 99 aa12.39□□□□□ -0.43
SMPD3-201ENST00000219334 ATRQ13535 2644 aa12.39□□□□□ -0.43
SMPD3-201ENST00000219334 PLA2G2DQ9UNK4 145 aa12.38□□□□□ -0.43
SMPD3-201ENST00000219334 ZNF575Q86XF7 245 aa12.37□□□□□ -0.43
SMPD3-201ENST00000219334 A0A1B0GVX0 72 aa12.35□□□□□ -0.43
SMPD3-201ENST00000219334 KRTAP1-1Q07627 177 aa12.35□□□□□ -0.43
SMPD3-201ENST00000219334 PRR15Q8IV56 129 aa12.35□□□□□ -0.43
SMPD3-201ENST00000219334 PSORS1C2Q9UIG4 136 aa12.35□□□□□ -0.43
SMPD3-201ENST00000219334 Q8N377 158 aa12.33□□□□□ -0.44
SMPD3-201ENST00000219334 ANAPC11Q9NYG5 84 aa12.33□□□□□ -0.44
SMPD3-201ENST00000219334 CNBPP62633 177 aaKnown RBP12.32□□□□□ -0.44
SMPD3-201ENST00000219334 LINC01600Q96MT4 127 aa12.32□□□□□ -0.44
SMPD3-201ENST00000219334 A0A1W2PNN7 141 aa12.31□□□□□ -0.44
SMPD3-201ENST00000219334 RBM12B-AS1Q9P1G2 102 aa12.29□□□□□ -0.44
SMPD3-201ENST00000219334 IGLV5-37A0A075B6J1 123 aa12.29□□□□□ -0.44
SMPD3-201ENST00000219334 CASC10Q5T4H9 136 aa12.29□□□□□ -0.44
SMPD3-201ENST00000219334 EIF4EBP3O60516 100 aaPredicted RBP12.27□□□□□ -0.44
SMPD3-201ENST00000219334 SPRR4Q96PI1 79 aa12.27□□□□□ -0.45
SMPD3-201ENST00000219334 ERC2-IT1O76042 136 aa12.26□□□□□ -0.45
SMPD3-201ENST00000219334 COA5Q86WW8 74 aa12.26□□□□□ -0.45
SMPD3-201ENST00000219334 A0A0G2JQZ4 141 aa12.24□□□□□ -0.45
SMPD3-201ENST00000219334 PRO0628Q9UI54 55 aa12.24□□□□□ -0.45
SMPD3-201ENST00000219334 RPS28P62857 69 aaKnown RBP12.23□□□□□ -0.45
SMPD3-201ENST00000219334 HELZ2Q9BYK8 2649 aaKnown RBP12.22□□□□□ -0.45
SMPD3-201ENST00000219334 UQCR11O14957 56 aa12.2□□□□□ -0.46
SMPD3-201ENST00000219334 TNP2Q05952 138 aa12.18□□□□□ -0.46
SMPD3-201ENST00000219334 FLNAP21333 2647 aaKnown RBP12.16□□□□□ -0.46
SMPD3-201ENST00000219334 DNAH12Q6ZR08 3092 aa12.14□□□□□ -0.47
SMPD3-201ENST00000219334 C4orf26Q17RF5 130 aa12.13□□□□□ -0.47
SMPD3-201ENST00000219334 PRRC2CQ9Y520 2896 aaKnown RBP12.13□□□□□ -0.47
SMPD3-201ENST00000219334 SPINT4Q6UDR6 99 aa12.12□□□□□ -0.47
SMPD3-201ENST00000219334 BPTFQ12830 3046 aa12.11□□□□□ -0.47
SMPD3-201ENST00000219334 ITPR3Q14573 2671 aa12.11□□□□□ -0.47
SMPD3-201ENST00000219334 CYP4F30PQ9H0H9 118 aa12.09□□□□□ -0.47
SMPD3-201ENST00000219334 CRIPTQ9P021 101 aa12.08□□□□□ -0.47
SMPD3-201ENST00000219334 A8MUN3 132 aa12.08□□□□□ -0.48
SMPD3-201ENST00000219334 A0A1W2PNM2 257 aa12.07□□□□□ -0.48
SMPD3-201ENST00000219334 Q6ZSA8 131 aa12.06□□□□□ -0.48
SMPD3-201ENST00000219334 LINC01554Q52M75 96 aa12.05□□□□□ -0.48
SMPD3-201ENST00000219334 MIR22HGQ0VDD5 57 aa12.04□□□□□ -0.48
SMPD3-201ENST00000219334 IGLV7-46A0A075B6I9 117 aa12.03□□□□□ -0.48
SMPD3-201ENST00000219334 STAB1Q9NY15 2570 aa12.02□□□□□ -0.48
SMPD3-201ENST00000219334 IGLV5-48A0A075B6I7 105 aa12.01□□□□□ -0.49
SMPD3-201ENST00000219334 KLKP1Q107X0 134 aa12□□□□□ -0.49
SMPD3-201ENST00000219334 CD164Q04900 197 aa12□□□□□ -0.49
SMPD3-201ENST00000219334 Q8N1X5 172 aa12□□□□□ -0.49
SMPD3-201ENST00000219334 PRR26Q8N8Z3 221 aa11.98□□□□□ -0.49
SMPD3-201ENST00000219334 WIPF1O43516 503 aa11.98□□□□□ -0.49
SMPD3-201ENST00000219334 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.97□□□□□ -0.49
SMPD3-201ENST00000219334 FAM104AQ969W3 186 aa11.97□□□□□ -0.49
SMPD3-201ENST00000219334 UTRNP46939 3433 aa11.97□□□□□ -0.49
SMPD3-201ENST00000219334 CFAP46Q8IYW2 2715 aa11.96□□□□□ -0.49
SMPD3-201ENST00000219334 CEP350Q5VT06 3117 aa11.93□□□□□ -0.5
SMPD3-201ENST00000219334 M0R2T5 61 aa11.9□□□□□ -0.5
SMPD3-201ENST00000219334 A0A0D9SG42 100 aa11.9□□□□□ -0.5
SMPD3-201ENST00000219334 FAM229BQ4G0N7 80 aa11.9□□□□□ -0.51
SMPD3-201ENST00000219334 SPANXA2-OT1Q8N9U9 137 aa11.85□□□□□ -0.51
SMPD3-201ENST00000219334 SETXQ7Z333 2677 aaKnown RBP11.85□□□□□ -0.51
SMPD3-201ENST00000219334 PLAC8Q9NZF1 115 aa11.84□□□□□ -0.51
SMPD3-201ENST00000219334 H7BZZ5 65 aa11.82□□□□□ -0.52
SMPD3-201ENST00000219334 PCNTO95613 3336 aa11.82□□□□□ -0.52
SMPD3-201ENST00000219334 CDC42SE1Q9NRR8 79 aa11.81□□□□□ -0.52
SMPD3-201ENST00000219334 CR1P17927 2039 aa11.79□□□□□ -0.52
SMPD3-201ENST00000219334 CENPEQ02224 2701 aa11.76□□□□□ -0.53
SMPD3-201ENST00000219334 CAMK2N1Q7Z7J9 78 aa11.74□□□□□ -0.53
SMPD3-201ENST00000219334 TEP1Q99973 2627 aaKnown RBP11.72□□□□□ -0.53
SMPD3-201ENST00000219334 LCE6AA0A183 80 aa11.67□□□□□ -0.54
SMPD3-201ENST00000219334 ZCCHC13Q8WW36 166 aaKnown RBP11.66□□□□□ -0.54
SMPD3-201ENST00000219334 CSAG1Q6PB30 78 aa11.65□□□□□ -0.54
SMPD3-201ENST00000219334 HRES1P13985 223 aa11.65□□□□□ -0.55
SMPD3-201ENST00000219334 Q5VSD8 79 aa11.64□□□□□ -0.55
SMPD3-201ENST00000219334 OCR1Q9BZK8 76 aa11.64□□□□□ -0.55
SMPD3-201ENST00000219334 TEX15Q9BXT5 2789 aa11.63□□□□□ -0.55
SMPD3-201ENST00000219334 SPRR1AP35321 89 aa11.62□□□□□ -0.55
SMPD3-201ENST00000219334 SEC61BP60468 96 aaKnown RBP11.62□□□□□ -0.55
SMPD3-201ENST00000219334 AKAP13Q12802 2813 aa11.62□□□□□ -0.55
SMPD3-201ENST00000219334 A0A1B0GU33 70 aa11.59□□□□□ -0.55
SMPD3-201ENST00000219334 COL6A5A8TX70 2615 aa11.57□□□□□ -0.56
SMPD3-201ENST00000219334 KRTAP1-5Q9BYS1 174 aa11.57□□□□□ -0.56
SMPD3-201ENST00000219334 FLG2Q5D862 2391 aaPredicted RBP11.56□□□□□ -0.56
SMPD3-201ENST00000219334 MMP24-AS1A0A0U1RRL7 71 aa11.56□□□□□ -0.56
SMPD3-201ENST00000219334 S4R3F8 94 aa11.55□□□□□ -0.56
SMPD3-201ENST00000219334 SPRR1BP22528 89 aa11.54□□□□□ -0.56
SMPD3-201ENST00000219334 CHD7Q9P2D1 2997 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms