RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 Q6ZQT0 140 aa5.37□□□□□ -1.55
VAMP3-201ENST00000054666 SVIPQ8NHG7 77 aa5.37□□□□□ -1.55
VAMP3-201ENST00000054666 IGLV5-37A0A075B6J1 123 aa5.36□□□□□ -1.55
VAMP3-201ENST00000054666 IGKV3D-7A0A0C4DH55 119 aa5.36□□□□□ -1.55
VAMP3-201ENST00000054666 PRYO14603 147 aa5.36□□□□□ -1.55
VAMP3-201ENST00000054666 NHLRC4P0CG21 123 aaPredicted RBP5.36□□□□□ -1.55
VAMP3-201ENST00000054666 APLNQ9ULZ1 77 aa5.36□□□□□ -1.55
VAMP3-201ENST00000054666 NUPR2A6NF83 97 aa5.35□□□□□ -1.55
VAMP3-201ENST00000054666 ETDCA0A1B0GVM5 59 aa5.35□□□□□ -1.55
VAMP3-201ENST00000054666 C14orf177Q52M58 125 aa5.35□□□□□ -1.55
VAMP3-201ENST00000054666 FAM19A5Q7Z5A7 132 aaPredicted RBP5.35□□□□□ -1.55
VAMP3-201ENST00000054666 DHRS4-AS1Q9P1J3 65 aa5.35□□□□□ -1.55
VAMP3-201ENST00000054666 FAM168BA1KXE4 195 aa5.34□□□□□ -1.55
VAMP3-201ENST00000054666 RPL37AP8A6NKH3 93 aa5.34□□□□□ -1.55
VAMP3-201ENST00000054666 MRPL55Q7Z7F7 128 aaKnown RBP5.34□□□□□ -1.55
VAMP3-201ENST00000054666 KRTAP1-5Q9BYS1 174 aa5.34□□□□□ -1.55
VAMP3-201ENST00000054666 IGLV1-50A0A075B6I6 118 aa5.33□□□□□ -1.56
VAMP3-201ENST00000054666 CNBPP62633 177 aaKnown RBP5.33□□□□□ -1.56
VAMP3-201ENST00000054666 Q6ZRX8 168 aa5.33□□□□□ -1.56
VAMP3-201ENST00000054666 TRBV7-4A0A0J9YYF1 115 aa5.32□□□□□ -1.56
VAMP3-201ENST00000054666 ATOX1O00244 68 aa5.32□□□□□ -1.56
VAMP3-201ENST00000054666 HIST1H4AP62805 103 aaKnown RBP5.32□□□□□ -1.56
VAMP3-201ENST00000054666 C16orf90A8MZG2 172 aa5.31□□□□□ -1.56
VAMP3-201ENST00000054666 B5MCH6 92 aa5.31□□□□□ -1.56
VAMP3-201ENST00000054666 CCDC179H3BU77 68 aa5.31□□□□□ -1.56
VAMP3-201ENST00000054666 SPRR1AP35321 89 aa5.31□□□□□ -1.56
VAMP3-201ENST00000054666 PKIGQ9Y2B9 76 aa5.31□□□□□ -1.56
VAMP3-201ENST00000054666 STAB2Q8WWQ8 2551 aa5.31□□□□□ -1.56
VAMP3-201ENST00000054666 IGKV2-24A0A0C4DH68 120 aa5.31□□□□□ -1.56
VAMP3-201ENST00000054666 DEFB105AQ8NG35 78 aa5.31□□□□□ -1.56
VAMP3-201ENST00000054666 DYNC2H1Q8NCM8 4307 aaKnown RBP5.31□□□□□ -1.56
VAMP3-201ENST00000054666 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.29□□□□□ -1.56
VAMP3-201ENST00000054666 A0A087WVE0 104 aa5.29□□□□□ -1.56
VAMP3-201ENST00000054666 A0A096LNI7 61 aa5.29□□□□□ -1.56
VAMP3-201ENST00000054666 KRTAP4-16G5E9R7 235 aaPredicted RBP5.29□□□□□ -1.56
VAMP3-201ENST00000054666 UBE2BP63146 152 aa5.29□□□□□ -1.56
VAMP3-201ENST00000054666 REG3GQ6UW15 175 aa5.29□□□□□ -1.56
VAMP3-201ENST00000054666 Q6ZVQ6 151 aa5.29□□□□□ -1.56
VAMP3-201ENST00000054666 KRTAP7-1Q8IUC3 87 aa5.29□□□□□ -1.56
VAMP3-201ENST00000054666 NBDYA0A0U1RRE5 68 aa5.29□□□□□ -1.56
VAMP3-201ENST00000054666 M0R2N4 97 aa5.29□□□□□ -1.56
VAMP3-201ENST00000054666 HAMPP81172 84 aa5.28□□□□□ -1.56
VAMP3-201ENST00000054666 Q9BRP9 147 aa5.28□□□□□ -1.56
VAMP3-201ENST00000054666 UQCRQO14949 82 aa5.28□□□□□ -1.56
VAMP3-201ENST00000054666 Q8N377 158 aa5.28□□□□□ -1.56
VAMP3-201ENST00000054666 LYSTQ99698 3801 aa5.28□□□□□ -1.56
VAMP3-201ENST00000054666 LINC01547P58512 204 aaPredicted RBP5.27□□□□□ -1.57
VAMP3-201ENST00000054666 DNAH10Q8IVF4 4471 aa5.27□□□□□ -1.57
VAMP3-201ENST00000054666 CXCL6P80162 114 aa5.27□□□□□ -1.57
VAMP3-201ENST00000054666 C3orf22Q8N5N4 141 aa5.27□□□□□ -1.57
VAMP3-201ENST00000054666 COX7CP15954 63 aa5.26□□□□□ -1.57
VAMP3-201ENST00000054666 C9orf153Q5TBE3 101 aa5.26□□□□□ -1.57
VAMP3-201ENST00000054666 FAM19A1Q7Z5A9 133 aa5.26□□□□□ -1.57
VAMP3-201ENST00000054666 IGLV5-48A0A075B6I7 105 aa5.25□□□□□ -1.57
VAMP3-201ENST00000054666 FUSP35637 526 aaKnown RBP eCLIP5.25□□□□□ -1.57
VAMP3-201ENST00000054666 PLECQ15149 4684 aaKnown RBP5.24□□□□□ -1.57
VAMP3-201ENST00000054666 A0A1W2PNN7 141 aa5.24□□□□□ -1.57
VAMP3-201ENST00000054666 C9orf163Q8N9P6 203 aa5.24□□□□□ -1.57
VAMP3-201ENST00000054666 ST20-AS1Q8NBB2 130 aa5.24□□□□□ -1.57
VAMP3-201ENST00000054666 LINC00474Q9P2X8 69 aa5.24□□□□□ -1.57
VAMP3-201ENST00000054666 COL7A1Q02388 2944 aa5.24□□□□□ -1.57
VAMP3-201ENST00000054666 LRCOL1A6NCL2 159 aa5.24□□□□□ -1.57
VAMP3-201ENST00000054666 F8WEM9 126 aa5.24□□□□□ -1.57
VAMP3-201ENST00000054666 SERP2Q8N6R1 65 aa5.24□□□□□ -1.57
VAMP3-201ENST00000054666 A0A1B0GW54 56 aa5.23□□□□□ -1.57
VAMP3-201ENST00000054666 C3orf84H3BNL1 204 aa5.23□□□□□ -1.57
VAMP3-201ENST00000054666 ERC2-IT1O76042 136 aa5.23□□□□□ -1.57
VAMP3-201ENST00000054666 CHTF8P0CG12 524 aa5.23□□□□□ -1.57
VAMP3-201ENST00000054666 PRLHP81277 87 aa5.23□□□□□ -1.57
VAMP3-201ENST00000054666 NREPQ16612 68 aa5.23□□□□□ -1.57
VAMP3-201ENST00000054666 C1orf137Q5JT78 98 aa5.23□□□□□ -1.57
VAMP3-201ENST00000054666 SS18L2Q9UHA2 77 aa5.23□□□□□ -1.57
VAMP3-201ENST00000054666 TNP2Q05952 138 aa5.22□□□□□ -1.57
VAMP3-201ENST00000054666 Q6ZRN7 208 aaPredicted RBP5.22□□□□□ -1.57
VAMP3-201ENST00000054666 HIGD2AQ9BW72 106 aa5.22□□□□□ -1.57
VAMP3-201ENST00000054666 SCXQ7RTU7 201 aa5.21□□□□□ -1.57
VAMP3-201ENST00000054666 PHF5AQ7RTV0 110 aaKnown RBP5.21□□□□□ -1.57
VAMP3-201ENST00000054666 PRKDCP78527 4128 aaKnown RBP5.21□□□□□ -1.58
VAMP3-201ENST00000054666 CRYGAP11844 174 aa5.2□□□□□ -1.58
VAMP3-201ENST00000054666 Q8NBF4 154 aa5.2□□□□□ -1.58
VAMP3-201ENST00000054666 BCE1O60756 84 aa5.2□□□□□ -1.58
VAMP3-201ENST00000054666 DNAH7Q8WXX0 4024 aa5.2□□□□□ -1.58
VAMP3-201ENST00000054666 CSMD3Q7Z407 3707 aa5.19□□□□□ -1.58
VAMP3-201ENST00000054666 BPY2O14599 106 aa5.19□□□□□ -1.58
VAMP3-201ENST00000054666 UBE2AP49459 152 aa5.19□□□□□ -1.58
VAMP3-201ENST00000054666 SMIM20Q8N5G0 67 aa5.19□□□□□ -1.58
VAMP3-201ENST00000054666 DPH3Q96FX2 82 aa5.19□□□□□ -1.58
VAMP3-201ENST00000054666 STARD9Q9P2P6 4700 aa5.19□□□□□ -1.58
VAMP3-201ENST00000054666 VPS13DQ5THJ4 4388 aa5.19□□□□□ -1.58
VAMP3-201ENST00000054666 A0A1W2PNM2 257 aa5.19□□□□□ -1.58
VAMP3-201ENST00000054666 H0Y9J4 135 aa5.18□□□□□ -1.58
VAMP3-201ENST00000054666 LINC00476Q8WZB0 136 aa5.18□□□□□ -1.58
VAMP3-201ENST00000054666 A0A087WTM6 91 aa5.17□□□□□ -1.58
VAMP3-201ENST00000054666 EPM2AB3EWF7 344 aa5.17□□□□□ -1.58
VAMP3-201ENST00000054666 SMIM29Q86T20 159 aa5.17□□□□□ -1.58
VAMP3-201ENST00000054666 SPRR4Q96PI1 79 aa5.17□□□□□ -1.58
VAMP3-201ENST00000054666 TRAV7A0A075B6U4 112 aa5.16□□□□□ -1.58
VAMP3-201ENST00000054666 SPACA4Q8TDM5 124 aa5.16□□□□□ -1.58
VAMP3-201ENST00000054666 IGKV4-1P06312 121 aa5.15□□□□□ -1.58
VAMP3-201ENST00000054666 KRTAP11-1Q8IUC1 163 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms