RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 EPG5Q9HCE0 2579 aa3.93□□□□□ -1.78
SCN1A-216ENST00000637968 A8MTW9 85 aa3.93□□□□□ -1.78
SCN1A-216ENST00000637968 H0Y9J4 135 aa3.93□□□□□ -1.78
SCN1A-216ENST00000637968 Q6ZSN1 163 aa3.93□□□□□ -1.78
SCN1A-216ENST00000637968 CENPFP49454 3210 aa3.92□□□□□ -1.78
SCN1A-216ENST00000637968 IGHV4-38-2P0DP08 117 aa3.92□□□□□ -1.78
SCN1A-216ENST00000637968 FAM104AQ969W3 186 aa3.92□□□□□ -1.78
SCN1A-216ENST00000637968 NOP10Q9NPE3 64 aaKnown RBP3.92□□□□□ -1.78
SCN1A-216ENST00000637968 A0A1B0GW54 56 aa3.92□□□□□ -1.78
SCN1A-216ENST00000637968 INAFM1C9JVW0 142 aa3.91□□□□□ -1.78
SCN1A-216ENST00000637968 MYO9AB2RTY4 2548 aa3.91□□□□□ -1.78
SCN1A-216ENST00000637968 IGHV4-31P0DP07 118 aa3.91□□□□□ -1.78
SCN1A-216ENST00000637968 LMO4P61968 165 aa3.91□□□□□ -1.78
SCN1A-216ENST00000637968 LINC00959A0A1B0GUT2 108 aa3.9□□□□□ -1.78
SCN1A-216ENST00000637968 COL27A1Q8IZC6 1860 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-216ENST00000637968 IGHV3OR16-9A0A0B4J2B5 98 aa3.9□□□□□ -1.78
SCN1A-216ENST00000637968 ST20-AS1Q8NBB2 130 aa3.9□□□□□ -1.79
SCN1A-216ENST00000637968 C5orf56Q8N8D9 126 aa3.9□□□□□ -1.79
SCN1A-216ENST00000637968 A0A0J9YWU9 116 aa3.89□□□□□ -1.79
SCN1A-216ENST00000637968 IGLV10-54A0A075B6I4 117 aa3.89□□□□□ -1.79
SCN1A-216ENST00000637968 DEFB136Q30KP8 78 aa3.89□□□□□ -1.79
SCN1A-216ENST00000637968 ASB16-AS1Q495Z4 193 aa3.89□□□□□ -1.79
SCN1A-216ENST00000637968 ZFP36P26651 326 aaKnown RBP3.88□□□□□ -1.79
SCN1A-216ENST00000637968 LINC01558Q9Y6Z2 57 aa3.88□□□□□ -1.79
SCN1A-216ENST00000637968 A0A096LNT2 108 aa3.88□□□□□ -1.79
SCN1A-216ENST00000637968 IGKV2D-24A0A075B6R9 120 aa3.88□□□□□ -1.79
SCN1A-216ENST00000637968 GYPEP15421 78 aa3.88□□□□□ -1.79
SCN1A-216ENST00000637968 KIAA0087Q14695 138 aa3.88□□□□□ -1.79
SCN1A-216ENST00000637968 KPRPQ5T749 579 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-216ENST00000637968 CAMK2N2Q96S95 79 aa3.88□□□□□ -1.79
SCN1A-216ENST00000637968 DEFB116Q30KQ4 102 aa3.88□□□□□ -1.79
SCN1A-216ENST00000637968 SLURP1P55000 103 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 C1orf137Q5JT78 98 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 USP34Q70CQ2 3546 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 A0A0A0MQY5 61 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 PCOTHQ58A44 107 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 C11orf71Q6IPW1 123 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 ZCCHC13Q8WW36 166 aaKnown RBP3.87□□□□□ -1.79
SCN1A-216ENST00000637968 C1orf134Q5TEV5 83 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 Q6YL49 198 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 LINC00476Q8WZB0 136 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 ABCA12Q86UK0 2595 aa3.87□□□□□ -1.79
SCN1A-216ENST00000637968 PLA2G1BP04054 148 aaKnown RBP3.86□□□□□ -1.79
SCN1A-216ENST00000637968 REG3AQ06141 175 aa3.86□□□□□ -1.79
SCN1A-216ENST00000637968 ZNF702PQ9H963 129 aa3.86□□□□□ -1.79
SCN1A-216ENST00000637968 FLNBO75369 2602 aaKnown RBP3.86□□□□□ -1.79
SCN1A-216ENST00000637968 USP9XQ93008 2570 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-216ENST00000637968 A6NDX4 124 aa3.86□□□□□ -1.79
SCN1A-216ENST00000637968 C16orf74Q96GX8 76 aa3.86□□□□□ -1.79
SCN1A-216ENST00000637968 KCNQ1DNQ9H478 68 aa3.86□□□□□ -1.79
SCN1A-216ENST00000637968 TLN2Q9Y4G6 2542 aa3.86□□□□□ -1.79
SCN1A-216ENST00000637968 XAGE1AQ9HD64 81 aa3.85□□□□□ -1.79
SCN1A-216ENST00000637968 USP9YO00507 2555 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-216ENST00000637968 IGHV6-1A0A0B4J1U7 121 aa3.85□□□□□ -1.79
SCN1A-216ENST00000637968 K7EQZ3 153 aa3.85□□□□□ -1.79
SCN1A-216ENST00000637968 CHCHD10Q8WYQ3 142 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-216ENST00000637968 LAMA3Q16787 3333 aa3.85□□□□□ -1.79
SCN1A-216ENST00000637968 SPINK7P58062 85 aa3.85□□□□□ -1.79
SCN1A-216ENST00000637968 C4orf3Q8WVX3 66 aa3.85□□□□□ -1.79
SCN1A-216ENST00000637968 PKD1L2Q7Z442 2459 aa3.84□□□□□ -1.79
SCN1A-216ENST00000637968 LCE6AA0A183 80 aa3.84□□□□□ -1.79
SCN1A-216ENST00000637968 Q8NAQ8 132 aa3.84□□□□□ -1.79
SCN1A-216ENST00000637968 KLK9Q2XQG4 91 aa3.84□□□□□ -1.79
SCN1A-216ENST00000637968 IGLV6-57P01721 117 aa3.84□□□□□ -1.8
SCN1A-216ENST00000637968 SPART-AS1P0CW21 52 aa3.84□□□□□ -1.8
SCN1A-216ENST00000637968 CSAG1Q6PB30 78 aa3.83□□□□□ -1.8
SCN1A-216ENST00000637968 Q8NBF4 154 aa3.83□□□□□ -1.8
SCN1A-216ENST00000637968 DHRS4-AS1Q9P1J3 65 aa3.83□□□□□ -1.8
SCN1A-216ENST00000637968 A0A1B0GU69 56 aa3.83□□□□□ -1.8
SCN1A-216ENST00000637968 KRTAP10-9P60411 292 aa3.82□□□□□ -1.8
SCN1A-216ENST00000637968 UNQ6190/PRO20217Q6UXQ8 127 aa3.82□□□□□ -1.8
SCN1A-216ENST00000637968 POLQO75417 2590 aa3.82□□□□□ -1.8
SCN1A-216ENST00000637968 LINC00612Q8N6U2 182 aa3.82□□□□□ -1.8
SCN1A-216ENST00000637968 MTORP42345 2549 aa3.82□□□□□ -1.8
SCN1A-216ENST00000637968 BRCA2P51587 3418 aa3.81□□□□□ -1.8
SCN1A-216ENST00000637968 ODF3L2Q3SX64 289 aa3.81□□□□□ -1.8
SCN1A-216ENST00000637968 PRO0255Q9UI72 69 aa3.81□□□□□ -1.8
SCN1A-216ENST00000637968 FN1P02751 2386 aaKnown RBP3.81□□□□□ -1.8
SCN1A-216ENST00000637968 CEP350Q5VT06 3117 aa3.81□□□□□ -1.8
SCN1A-216ENST00000637968 CYSRT1A8MQ03 144 aa3.81□□□□□ -1.8
SCN1A-216ENST00000637968 REG3GQ6UW15 175 aa3.81□□□□□ -1.8
SCN1A-216ENST00000637968 ADM2Q7Z4H4 148 aa3.81□□□□□ -1.8
SCN1A-216ENST00000637968 WDR87Q6ZQQ6 2873 aa3.8□□□□□ -1.8
SCN1A-216ENST00000637968 IGLV7-46A0A075B6I9 117 aa3.8□□□□□ -1.8
SCN1A-216ENST00000637968 C18orf65Q6ZTR6 163 aa3.8□□□□□ -1.8
SCN1A-216ENST00000637968 MIR22HGQ0VDD5 57 aa3.8□□□□□ -1.8
SCN1A-216ENST00000637968 MAP6D1Q9H9H5 199 aa3.8□□□□□ -1.8
SCN1A-216ENST00000637968 UQCR11O14957 56 aa3.8□□□□□ -1.8
SCN1A-216ENST00000637968 DEFB4AO15263 64 aa3.79□□□□□ -1.8
SCN1A-216ENST00000637968 DEFB135Q30KP9 77 aa3.79□□□□□ -1.8
SCN1A-216ENST00000637968 A0A087X002 238 aa3.79□□□□□ -1.8
SCN1A-216ENST00000637968 A0A1B0GUV1 79 aa3.79□□□□□ -1.8
SCN1A-216ENST00000637968 IGHV4-30-4P0DP06 118 aa3.78□□□□□ -1.8
SCN1A-216ENST00000637968 SETD2Q9BYW2 2564 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-216ENST00000637968 DSCR10P59022 87 aa3.78□□□□□ -1.8
SCN1A-216ENST00000637968 SMR3AQ99954 134 aa3.78□□□□□ -1.8
SCN1A-216ENST00000637968 DNAH12Q6ZR08 3092 aa3.77□□□□□ -1.81
SCN1A-216ENST00000637968 TP53AIP1Q9HCN2 124 aa3.77□□□□□ -1.81
SCN1A-216ENST00000637968 F8P00451 2351 aa3.77□□□□□ -1.81
SCN1A-216ENST00000637968 A0A087WSZ3 146 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms