RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MRPL55Q7Z7F7 128 aaKnown RBP11.27□□□□□ -0.61
CLN3-259ENST00000637551 SND1-IT1Q9HBX3 110 aa11.27□□□□□ -0.61
CLN3-259ENST00000637551 E9PLD3 99 aa11.26□□□□□ -0.61
CLN3-259ENST00000637551 J3QQQ9 107 aa11.26□□□□□ -0.61
CLN3-259ENST00000637551 UBE2BP63146 152 aa11.26□□□□□ -0.61
CLN3-259ENST00000637551 RPL24P83731 157 aaKnown RBP11.26□□□□□ -0.61
CLN3-259ENST00000637551 C20orf202A1L168 122 aa11.24□□□□□ -0.61
CLN3-259ENST00000637551 C3orf79P0CE67 100 aa11.24□□□□□ -0.61
CLN3-259ENST00000637551 NKAPP1Q8N9T2 125 aa11.24□□□□□ -0.61
CLN3-259ENST00000637551 C1orf137Q5JT78 98 aa11.23□□□□□ -0.61
CLN3-259ENST00000637551 REG3GQ6UW15 175 aa11.23□□□□□ -0.61
CLN3-259ENST00000637551 LOC107984156A0A0G2JMH3 177 aa11.22□□□□□ -0.61
CLN3-259ENST00000637551 IGLV7-43P04211 117 aa11.22□□□□□ -0.61
CLN3-259ENST00000637551 LGALS3P17931 250 aaKnown RBP11.22□□□□□ -0.61
CLN3-259ENST00000637551 LINC00158P58513 81 aa11.22□□□□□ -0.61
CLN3-259ENST00000637551 ARL17AQ8IVW1 177 aa11.22□□□□□ -0.61
CLN3-259ENST00000637551 PMCHL2Q9BQD1 86 aa11.22□□□□□ -0.61
CLN3-259ENST00000637551 VPREB1P12018 145 aa11.21□□□□□ -0.61
CLN3-259ENST00000637551 MEIG1Q5JSS6 88 aa11.21□□□□□ -0.61
CLN3-259ENST00000637551 LRP1Q07954 4544 aaKnown RBP11.2□□□□□ -0.62
CLN3-259ENST00000637551 TSPEAR-AS2P59090 65 aa11.2□□□□□ -0.62
CLN3-259ENST00000637551 DIRC1Q969H9 104 aa11.2□□□□□ -0.62
CLN3-259ENST00000637551 IGKV2D-26A0A0A0MRZ7 120 aa11.18□□□□□ -0.62
CLN3-259ENST00000637551 S100A6P06703 90 aa11.18□□□□□ -0.62
CLN3-259ENST00000637551 SMIM13P0DJ93 91 aa11.18□□□□□ -0.62
CLN3-259ENST00000637551 KRTDAPP60985 99 aa11.18□□□□□ -0.62
CLN3-259ENST00000637551 KRTAP11-1Q8IUC1 163 aa11.18□□□□□ -0.62
CLN3-259ENST00000637551 LINC00167Q96N53 147 aa11.18□□□□□ -0.62
CLN3-259ENST00000637551 SNRPEP62304 92 aaKnown RBP11.17□□□□□ -0.62
CLN3-259ENST00000637551 HIST3H2BBQ8N257 126 aa11.17□□□□□ -0.62
CLN3-259ENST00000637551 MIR7-3HGQ8N6C7 128 aa11.17□□□□□ -0.62
CLN3-259ENST00000637551 LINC01600Q96MT4 127 aa11.17□□□□□ -0.62
CLN3-259ENST00000637551 S100A2P29034 98 aa11.16□□□□□ -0.62
CLN3-259ENST00000637551 BCE1O60756 84 aa11.15□□□□□ -0.62
CLN3-259ENST00000637551 IGLV1-50A0A075B6I6 118 aa11.14□□□□□ -0.63
CLN3-259ENST00000637551 H0Y9J4 135 aa11.14□□□□□ -0.63
CLN3-259ENST00000637551 ZNF861PO60384 105 aa11.14□□□□□ -0.63
CLN3-259ENST00000637551 TIMM17BO60830 172 aa11.14□□□□□ -0.63
CLN3-259ENST00000637551 HIST1H2BLQ99880 126 aa11.14□□□□□ -0.63
CLN3-259ENST00000637551 FAT3Q8TDW7 4589 aa11.14□□□□□ -0.63
CLN3-259ENST00000637551 RNF213Q63HN8 5207 aa11.13□□□□□ -0.63
CLN3-259ENST00000637551 M0R378 163 aa11.13□□□□□ -0.63
CLN3-259ENST00000637551 RPL28P46779 137 aaKnown RBP11.13□□□□□ -0.63
CLN3-259ENST00000637551 A0A0J9YXY3 114 aa11.11□□□□□ -0.63
CLN3-259ENST00000637551 TRBV10-2A0A0K0K1G8 114 aa11.11□□□□□ -0.63
CLN3-259ENST00000637551 NDUFC2O95298 119 aa11.11□□□□□ -0.63
CLN3-259ENST00000637551 BOD1L2Q8IYS8 172 aa11.11□□□□□ -0.63
CLN3-259ENST00000637551 MIEN1Q9BRT3 115 aa11.11□□□□□ -0.63
CLN3-259ENST00000637551 MT1HL1P0DM35 61 aa11.1□□□□□ -0.63
CLN3-259ENST00000637551 A0A0U1RRA0 63 aa11.09□□□□□ -0.63
CLN3-259ENST00000637551 PPDPFQ9H3Y8 114 aa11.09□□□□□ -0.63
CLN3-259ENST00000637551 RPL37AP8A6NKH3 93 aa11.08□□□□□ -0.64
CLN3-259ENST00000637551 KRTAP13-1Q8IUC0 172 aa11.08□□□□□ -0.64
CLN3-259ENST00000637551 Q8NDZ9 215 aa11.08□□□□□ -0.64
CLN3-259ENST00000637551 GAGE10A6NGK3 116 aa11.07□□□□□ -0.64
CLN3-259ENST00000637551 C5orf52A6NGY3 159 aa11.07□□□□□ -0.64
CLN3-259ENST00000637551 ZNF815PA8K554 130 aa11.07□□□□□ -0.64
CLN3-259ENST00000637551 SPANXB1Q9NS25 103 aaPredicted RBP11.07□□□□□ -0.64
CLN3-259ENST00000637551 IGKV2-28A0A075B6P5 120 aa11.06□□□□□ -0.64
CLN3-259ENST00000637551 PRYO14603 147 aa11.06□□□□□ -0.64
CLN3-259ENST00000637551 IGKV2D-28P01615 120 aa11.06□□□□□ -0.64
CLN3-259ENST00000637551 S100A12P80511 92 aa11.06□□□□□ -0.64
CLN3-259ENST00000637551 TMEM126AQ9H061 195 aa11.06□□□□□ -0.64
CLN3-259ENST00000637551 COPS9Q8WXC6 57 aa11.05□□□□□ -0.64
CLN3-259ENST00000637551 LITAFQ99732 161 aa11.05□□□□□ -0.64
CLN3-259ENST00000637551 KCNQ1DNQ9H478 68 aa11.05□□□□□ -0.64
CLN3-259ENST00000637551 CBY1Q9Y3M2 126 aa11.05□□□□□ -0.64
CLN3-259ENST00000637551 Q6ZVH6 145 aa11.04□□□□□ -0.64
CLN3-259ENST00000637551 TMEM238C9JI98 176 aa11.03□□□□□ -0.64
CLN3-259ENST00000637551 KRTAP10-8P60410 259 aa11.03□□□□□ -0.64
CLN3-259ENST00000637551 HSBP1L1C9JCN9 74 aa11.02□□□□□ -0.65
CLN3-259ENST00000637551 SPRR1AP35321 89 aa11.02□□□□□ -0.65
CLN3-259ENST00000637551 UBE2AP49459 152 aa11.02□□□□□ -0.65
CLN3-259ENST00000637551 LINC00337Q8N6G1 96 aa11.02□□□□□ -0.65
CLN3-259ENST00000637551 DAND5Q8N907 189 aa11.02□□□□□ -0.65
CLN3-259ENST00000637551 KRTAP1-4P0C5Y4 121 aa11.01□□□□□ -0.65
CLN3-259ENST00000637551 RPL13AP40429 203 aaKnown RBP11.01□□□□□ -0.65
CLN3-259ENST00000637551 ANKRD39Q53RE8 183 aa11.01□□□□□ -0.65
CLN3-259ENST00000637551 ADAMTSL4-AS1Q5T5F5 129 aa11.01□□□□□ -0.65
CLN3-259ENST00000637551 SPANXCQ9NY87 97 aa11.01□□□□□ -0.65
CLN3-259ENST00000637551 SPANXDQ9BXN6 97 aa11□□□□□ -0.65
CLN3-259ENST00000637551 SCGB1D4Q6XE38 83 aa10.99□□□□□ -0.65
CLN3-259ENST00000637551 LINC00308Q8TCZ7 52 aa10.99□□□□□ -0.65
CLN3-259ENST00000637551 NCR3O14931 201 aa10.98□□□□□ -0.65
CLN3-259ENST00000637551 IGLV6-57P01721 117 aa10.98□□□□□ -0.65
CLN3-259ENST00000637551 IFITM1P13164 125 aa10.98□□□□□ -0.65
CLN3-259ENST00000637551 ATOH7Q8N100 152 aa10.98□□□□□ -0.65
CLN3-259ENST00000637551 TNXBP22105 4242 aa10.97□□□□□ -0.65
CLN3-259ENST00000637551 LRP2P98164 4655 aa10.97□□□□□ -0.65
CLN3-259ENST00000637551 TRBV10-3A0A0K0K1G6 114 aa10.97□□□□□ -0.65
CLN3-259ENST00000637551 DDTP30046 118 aa10.97□□□□□ -0.65
CLN3-259ENST00000637551 SOSTDC1Q6X4U4 206 aa10.97□□□□□ -0.65
CLN3-259ENST00000637551 FAM19A1Q7Z5A9 133 aa10.97□□□□□ -0.65
CLN3-259ENST00000637551 KRTAP4-16G5E9R7 235 aaPredicted RBP10.96□□□□□ -0.65
CLN3-259ENST00000637551 LINC00518Q8N0U6 118 aa10.96□□□□□ -0.65
CLN3-259ENST00000637551 FAM229BQ4G0N7 80 aa10.95□□□□□ -0.66
CLN3-259ENST00000637551 TTTY13Q9BZ97 58 aa10.95□□□□□ -0.66
CLN3-259ENST00000637551 S100A7L2Q5SY68 101 aa10.94□□□□□ -0.66
CLN3-259ENST00000637551 PRLHP81277 87 aa10.92□□□□□ -0.66
CLN3-259ENST00000637551 PCP2Q8IVA1 136 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 160.4 ms