RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 WFDC9Q8NEX5 89 aa10.19□□□□□ -0.78
CLN3-253ENST00000636977 INAFM1C9JVW0 142 aa10.18□□□□□ -0.78
CLN3-253ENST00000636977 NCR3O14931 201 aa10.18□□□□□ -0.78
CLN3-253ENST00000636977 NANOS2P60321 138 aaKnown RBP10.18□□□□□ -0.78
CLN3-253ENST00000636977 HIVEP1P15822 2718 aa10.18□□□□□ -0.78
CLN3-253ENST00000636977 HTN3P15516 51 aa10.18□□□□□ -0.78
CLN3-253ENST00000636977 C20orf197Q8N268 126 aa10.17□□□□□ -0.78
CLN3-253ENST00000636977 H0YGX0 51 aa10.17□□□□□ -0.78
CLN3-253ENST00000636977 REG3AQ06141 175 aa10.17□□□□□ -0.78
CLN3-253ENST00000636977 LYRM9A8MSI8 78 aa10.16□□□□□ -0.78
CLN3-253ENST00000636977 F8WDY8 70 aa10.16□□□□□ -0.78
CLN3-253ENST00000636977 LINC01561Q8N1V8 128 aa10.16□□□□□ -0.78
CLN3-253ENST00000636977 C6orf223Q8N319 242 aa10.16□□□□□ -0.78
CLN3-253ENST00000636977 TRAV23DV6A0A075B6W5 121 aa10.16□□□□□ -0.78
CLN3-253ENST00000636977 DAD1P61803 113 aa10.16□□□□□ -0.78
CLN3-253ENST00000636977 CD164L2Q6UWJ8 174 aa10.16□□□□□ -0.78
CLN3-253ENST00000636977 INAFM2P0DMQ5 153 aa10.15□□□□□ -0.78
CLN3-253ENST00000636977 SEC61GP60059 68 aa10.15□□□□□ -0.78
CLN3-253ENST00000636977 C9orf66Q5T8R8 295 aa10.15□□□□□ -0.78
CLN3-253ENST00000636977 LINC00846Q9NV44 126 aa10.15□□□□□ -0.78
CLN3-253ENST00000636977 C10orf25Q5T742 122 aa10.14□□□□□ -0.79
CLN3-253ENST00000636977 TEP1Q99973 2627 aaKnown RBP10.14□□□□□ -0.79
CLN3-253ENST00000636977 BRK1Q8WUW1 75 aa10.14□□□□□ -0.79
CLN3-253ENST00000636977 GHRHP01286 108 aa10.13□□□□□ -0.79
CLN3-253ENST00000636977 Q8NAQ8 132 aa10.13□□□□□ -0.79
CLN3-253ENST00000636977 OBSCN-AS1Q96MR7 158 aa10.12□□□□□ -0.79
CLN3-253ENST00000636977 UNQ6190/PRO20217Q6UXQ8 127 aa10.11□□□□□ -0.79
CLN3-253ENST00000636977 PKD1L1Q8TDX9 2849 aa10.1□□□□□ -0.79
CLN3-253ENST00000636977 ORMDL1Q9P0S3 153 aa10.09□□□□□ -0.79
CLN3-253ENST00000636977 V9GYY9 64 aa10.09□□□□□ -0.79
CLN3-253ENST00000636977 APOC4P55056 127 aa10.09□□□□□ -0.79
CLN3-253ENST00000636977 KLK12Q9UKR0 248 aa10.09□□□□□ -0.79
CLN3-253ENST00000636977 Q8N814 137 aa10.08□□□□□ -0.8
CLN3-253ENST00000636977 C6orf99Q4VX62 202 aa10.07□□□□□ -0.8
CLN3-253ENST00000636977 IGHV4-30-4P0DP06 118 aa10.06□□□□□ -0.8
CLN3-253ENST00000636977 SPAG11BQ08648 103 aa10.06□□□□□ -0.8
CLN3-253ENST00000636977 COX17Q14061 63 aa10.06□□□□□ -0.8
CLN3-253ENST00000636977 C1orf195Q5TG92 126 aa10.06□□□□□ -0.8
CLN3-253ENST00000636977 Q6JHZ5 121 aa10.06□□□□□ -0.8
CLN3-253ENST00000636977 FAM19A1Q7Z5A9 133 aa10.06□□□□□ -0.8
CLN3-253ENST00000636977 CYSRT1A8MQ03 144 aa10.05□□□□□ -0.8
CLN3-253ENST00000636977 NDUFC2O95298 119 aa10.05□□□□□ -0.8
CLN3-253ENST00000636977 SPART-AS1P0CW21 52 aa10.05□□□□□ -0.8
CLN3-253ENST00000636977 ENHOQ6UWT2 76 aa10.05□□□□□ -0.8
CLN3-253ENST00000636977 SNURFQ9Y675 71 aa10.05□□□□□ -0.8
CLN3-253ENST00000636977 MIFP14174 115 aa10.05□□□□□ -0.8
CLN3-253ENST00000636977 LINC00474Q9P2X8 69 aa10.05□□□□□ -0.8
CLN3-253ENST00000636977 LINC00167Q96N53 147 aa10.04□□□□□ -0.8
CLN3-253ENST00000636977 LELP1Q5T871 98 aa10.04□□□□□ -0.8
CLN3-253ENST00000636977 S100A7L2Q5SY68 101 aa10.03□□□□□ -0.8
CLN3-253ENST00000636977 RETNQ9HD89 108 aa10.03□□□□□ -0.8
CLN3-253ENST00000636977 XAGE1AQ9HD64 81 aa10.01□□□□□ -0.81
CLN3-253ENST00000636977 PRR34Q9NV39 138 aa10.01□□□□□ -0.81
CLN3-253ENST00000636977 SERP1Q9Y6X1 66 aa10.01□□□□□ -0.81
CLN3-253ENST00000636977 FP248Q71RG6 208 aaPredicted RBP10.01□□□□□ -0.81
CLN3-253ENST00000636977 CCKP06307 115 aa10□□□□□ -0.81
CLN3-253ENST00000636977 RBM3P98179 157 aaKnown RBP10□□□□□ -0.81
CLN3-253ENST00000636977 LYPD5Q6UWN5 251 aa10□□□□□ -0.81
CLN3-253ENST00000636977 MPLKIPQ8TAP9 179 aa10□□□□□ -0.81
CLN3-253ENST00000636977 TENM3Q9P273 2699 aa9.99□□□□□ -0.81
CLN3-253ENST00000636977 LINC00575Q6W349 94 aa9.99□□□□□ -0.81
CLN3-253ENST00000636977 WFDC10BQ8IUB3 73 aa9.99□□□□□ -0.81
CLN3-253ENST00000636977 C6orf48Q9UBA6 75 aa9.99□□□□□ -0.81
CLN3-253ENST00000636977 OXLD1Q5BKU9 147 aa9.98□□□□□ -0.81
CLN3-253ENST00000636977 A0A0J9YWU9 116 aa9.98□□□□□ -0.81
CLN3-253ENST00000636977 TMEM256-PLSCR3K7ERE1 68 aa9.98□□□□□ -0.81
CLN3-253ENST00000636977 HIGD2BQ4VC39 106 aa9.98□□□□□ -0.81
CLN3-253ENST00000636977 RMI2Q96E14 147 aa9.98□□□□□ -0.81
CLN3-253ENST00000636977 ANK2Q01484 3957 aa9.97□□□□□ -0.81
CLN3-253ENST00000636977 H7BZZ5 65 aa9.97□□□□□ -0.81
CLN3-253ENST00000636977 F8WEM9 126 aa9.96□□□□□ -0.82
CLN3-253ENST00000636977 M0R2N4 97 aa9.96□□□□□ -0.82
CLN3-253ENST00000636977 TRBV10-3A0A0K0K1G6 114 aa9.95□□□□□ -0.82
CLN3-253ENST00000636977 NDUFC2-KCTD14E9PQ53 114 aa9.95□□□□□ -0.82
CLN3-253ENST00000636977 IGLV6-57P01721 117 aa9.95□□□□□ -0.82
CLN3-253ENST00000636977 SMIM26A0A096LP01 95 aa9.95□□□□□ -0.82
CLN3-253ENST00000636977 JMJD7-PLA2G4BH0Y9G9 81 aa9.94□□□□□ -0.82
CLN3-253ENST00000636977 KRTAP10-11P60412 298 aa9.93□□□□□ -0.82
CLN3-253ENST00000636977 KPRPQ5T749 579 aaPredicted RBP9.93□□□□□ -0.82
CLN3-253ENST00000636977 Q6ZTC4 211 aa9.93□□□□□ -0.82
CLN3-253ENST00000636977 Q6ZQY7 126 aa9.92□□□□□ -0.82
CLN3-253ENST00000636977 TRBV7-6A0A0J9YX20 115 aa9.9□□□□□ -0.82
CLN3-253ENST00000636977 LAMTOR3Q9UHA4 124 aa9.9□□□□□ -0.82
CLN3-253ENST00000636977 KRTAP26-1Q6PEX3 210 aa9.9□□□□□ -0.82
CLN3-253ENST00000636977 STAB1Q9NY15 2570 aa9.9□□□□□ -0.82
CLN3-253ENST00000636977 GVQW2A0A096LPI5 108 aaPredicted RBP9.89□□□□□ -0.83
CLN3-253ENST00000636977 Q6ZQT0 140 aa9.89□□□□□ -0.83
CLN3-253ENST00000636977 CAMK2N2Q96S95 79 aa9.89□□□□□ -0.83
CLN3-253ENST00000636977 Q6ZRU5 148 aa9.88□□□□□ -0.83
CLN3-253ENST00000636977 ZNF561-AS1K7EIQ3 104 aa9.88□□□□□ -0.83
CLN3-253ENST00000636977 ESRGQ1W209 222 aa9.88□□□□□ -0.83
CLN3-253ENST00000636977 FBN1P35555 2871 aaKnown RBP9.87□□□□□ -0.83
CLN3-253ENST00000636977 F8P00451 2351 aa9.87□□□□□ -0.83
CLN3-253ENST00000636977 C15orf56Q8N910 161 aa9.87□□□□□ -0.83
CLN3-253ENST00000636977 TRAV10A0A0B4J240 114 aa9.86□□□□□ -0.83
CLN3-253ENST00000636977 HAMPP81172 84 aa9.86□□□□□ -0.83
CLN3-253ENST00000636977 EPM2AB3EWF7 344 aa9.86□□□□□ -0.83
CLN3-253ENST00000636977 ZNF73O43830 326 aaPredicted RBP9.86□□□□□ -0.83
CLN3-253ENST00000636977 VPREB1P12018 145 aa9.85□□□□□ -0.83
CLN3-253ENST00000636977 DIRC1Q969H9 104 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms