RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 C10orf25Q5T742 122 aa10.54□□□□□ -0.72
CLN3-251ENST00000636853 UNQ6190/PRO20217Q6UXQ8 127 aa10.53□□□□□ -0.72
CLN3-251ENST00000636853 SMIM20Q8N5G0 67 aa10.52□□□□□ -0.73
CLN3-251ENST00000636853 COX17Q14061 63 aa10.51□□□□□ -0.73
CLN3-251ENST00000636853 MDFIQ99750 246 aa10.51□□□□□ -0.73
CLN3-251ENST00000636853 RPL28P46779 137 aaKnown RBP10.5□□□□□ -0.73
CLN3-251ENST00000636853 OR13C6PQ8NH95 151 aa10.5□□□□□ -0.73
CLN3-251ENST00000636853 SMIM11BQ8TCY0 68 aa10.5□□□□□ -0.73
CLN3-251ENST00000636853 PRR3P79522 188 aaKnown RBP10.5□□□□□ -0.73
CLN3-251ENST00000636853 MGAM2Q2M2H8 2515 aa10.49□□□□□ -0.73
CLN3-251ENST00000636853 FAM218AQ96MZ4 157 aa10.49□□□□□ -0.73
CLN3-251ENST00000636853 TRAV10A0A0B4J240 114 aa10.49□□□□□ -0.73
CLN3-251ENST00000636853 KRTAP26-1Q6PEX3 210 aa10.48□□□□□ -0.73
CLN3-251ENST00000636853 FAM236AA0A1B0GUQ0 79 aa10.47□□□□□ -0.73
CLN3-251ENST00000636853 FAM236BA0A1B0GV22 79 aa10.47□□□□□ -0.73
CLN3-251ENST00000636853 INAFM2P0DMQ5 153 aa10.47□□□□□ -0.73
CLN3-251ENST00000636853 LINC01556Q5JQF7 62 aa10.47□□□□□ -0.73
CLN3-251ENST00000636853 UQCRQO14949 82 aa10.46□□□□□ -0.73
CLN3-251ENST00000636853 HIGD2BQ4VC39 106 aa10.46□□□□□ -0.73
CLN3-251ENST00000636853 C3orf22Q8N5N4 141 aa10.46□□□□□ -0.73
CLN3-251ENST00000636853 Q8NDZ9 215 aa10.45□□□□□ -0.74
CLN3-251ENST00000636853 SMCR5Q8TEV8 140 aa10.44□□□□□ -0.74
CLN3-251ENST00000636853 C6orf48Q9UBA6 75 aa10.44□□□□□ -0.74
CLN3-251ENST00000636853 BAALC-AS2P0C853 105 aa10.44□□□□□ -0.74
CLN3-251ENST00000636853 C1orf43Q9BWL3 253 aa10.44□□□□□ -0.74
CLN3-251ENST00000636853 IGKV2D-24A0A075B6R9 120 aa10.43□□□□□ -0.74
CLN3-251ENST00000636853 LINC00588Q9Y4M8 146 aa10.43□□□□□ -0.74
CLN3-251ENST00000636853 ZNF561-AS1K7EIQ3 104 aa10.42□□□□□ -0.74
CLN3-251ENST00000636853 NDUFC2O95298 119 aa10.42□□□□□ -0.74
CLN3-251ENST00000636853 NCR3O14931 201 aa10.42□□□□□ -0.74
CLN3-251ENST00000636853 C15orf56Q8N910 161 aa10.42□□□□□ -0.74
CLN3-251ENST00000636853 Q9HAA7 133 aa10.42□□□□□ -0.74
CLN3-251ENST00000636853 C22orf24Q9Y442 160 aa10.42□□□□□ -0.74
CLN3-251ENST00000636853 A0A087WYN8 130 aa10.41□□□□□ -0.74
CLN3-251ENST00000636853 DNAH10OSP0CZ25 163 aa10.41□□□□□ -0.74
CLN3-251ENST00000636853 GVQW2A0A096LPI5 108 aaPredicted RBP10.41□□□□□ -0.74
CLN3-251ENST00000636853 HIST1H4AP62805 103 aaKnown RBP10.4□□□□□ -0.74
CLN3-251ENST00000636853 C9orf153Q5TBE3 101 aa10.4□□□□□ -0.74
CLN3-251ENST00000636853 CAMK2N2Q96S95 79 aa10.4□□□□□ -0.74
CLN3-251ENST00000636853 H0YGX0 51 aa10.38□□□□□ -0.75
CLN3-251ENST00000636853 A0A1B0GX51 115 aa10.38□□□□□ -0.75
CLN3-251ENST00000636853 COX7CP15954 63 aa10.38□□□□□ -0.75
CLN3-251ENST00000636853 Q6ZRU5 148 aa10.38□□□□□ -0.75
CLN3-251ENST00000636853 MUC7Q8TAX7 377 aa10.38□□□□□ -0.75
CLN3-251ENST00000636853 XAGE1AQ9HD64 81 aa10.38□□□□□ -0.75
CLN3-251ENST00000636853 DNAH9Q9NYC9 4486 aa10.37□□□□□ -0.75
CLN3-251ENST00000636853 ATOX1O00244 68 aa10.37□□□□□ -0.75
CLN3-251ENST00000636853 CRYGAP11844 174 aa10.37□□□□□ -0.75
CLN3-251ENST00000636853 COL7A1Q02388 2944 aa10.36□□□□□ -0.75
CLN3-251ENST00000636853 LECT2O14960 151 aa10.35□□□□□ -0.75
CLN3-251ENST00000636853 S100A7L2Q5SY68 101 aa10.35□□□□□ -0.75
CLN3-251ENST00000636853 OBSCN-AS1Q96MR7 158 aa10.35□□□□□ -0.75
CLN3-251ENST00000636853 DNAL4O96015 105 aa10.35□□□□□ -0.75
CLN3-251ENST00000636853 RPL18AQ02543 176 aaKnown RBP10.35□□□□□ -0.75
CLN3-251ENST00000636853 C2orf48Q96LS8 159 aa10.35□□□□□ -0.75
CLN3-251ENST00000636853 RPS28P62857 69 aaKnown RBP10.34□□□□□ -0.75
CLN3-251ENST00000636853 DNAH1Q9P2D7 4330 aa10.33□□□□□ -0.76
CLN3-251ENST00000636853 SLPIP03973 132 aa10.32□□□□□ -0.76
CLN3-251ENST00000636853 Q6JHZ5 121 aa10.32□□□□□ -0.76
CLN3-251ENST00000636853 C6orf99Q4VX62 202 aa10.32□□□□□ -0.76
CLN3-251ENST00000636853 GAGE2AQ6NT46 116 aa10.32□□□□□ -0.76
CLN3-251ENST00000636853 CASC10Q5T4H9 136 aa10.31□□□□□ -0.76
CLN3-251ENST00000636853 J3KT08 172 aa10.31□□□□□ -0.76
CLN3-251ENST00000636853 STAB2Q8WWQ8 2551 aa10.29□□□□□ -0.76
CLN3-251ENST00000636853 NDUFC2-KCTD14E9PQ53 114 aa10.29□□□□□ -0.76
CLN3-251ENST00000636853 IGLV6-57P01721 117 aa10.29□□□□□ -0.76
CLN3-251ENST00000636853 SYCNQ0VAF6 134 aa10.29□□□□□ -0.76
CLN3-251ENST00000636853 LYSTQ99698 3801 aa10.28□□□□□ -0.76
CLN3-251ENST00000636853 B9D2Q9BPU9 175 aa10.28□□□□□ -0.76
CLN3-251ENST00000636853 UPK3BQ9BT76 320 aa10.28□□□□□ -0.76
CLN3-251ENST00000636853 Q6ZRP5 223 aa10.28□□□□□ -0.76
CLN3-251ENST00000636853 TRBV10-3A0A0K0K1G6 114 aa10.27□□□□□ -0.76
CLN3-251ENST00000636853 C9orf129Q5T035 196 aaKnown RBP10.27□□□□□ -0.77
CLN3-251ENST00000636853 Q8N814 137 aa10.27□□□□□ -0.77
CLN3-251ENST00000636853 USP17L23D6RBM5 183 aa10.26□□□□□ -0.77
CLN3-251ENST00000636853 VPREB1P12018 145 aa10.26□□□□□ -0.77
CLN3-251ENST00000636853 F8WDY8 70 aa10.25□□□□□ -0.77
CLN3-251ENST00000636853 ORMDL1Q9P0S3 153 aa10.24□□□□□ -0.77
CLN3-251ENST00000636853 TMEM258P61165 79 aa10.24□□□□□ -0.77
CLN3-251ENST00000636853 SERP2Q8N6R1 65 aa10.24□□□□□ -0.77
CLN3-251ENST00000636853 RMI2Q96E14 147 aa10.23□□□□□ -0.77
CLN3-251ENST00000636853 LINC00167Q96N53 147 aa10.23□□□□□ -0.77
CLN3-251ENST00000636853 TRAV23DV6A0A075B6W5 121 aa10.23□□□□□ -0.77
CLN3-251ENST00000636853 LINC00575Q6W349 94 aa10.22□□□□□ -0.77
CLN3-251ENST00000636853 APLNQ9ULZ1 77 aa10.22□□□□□ -0.77
CLN3-251ENST00000636853 KRTAP1-5Q9BYS1 174 aa10.22□□□□□ -0.77
CLN3-251ENST00000636853 C14orf132Q9NPU4 83 aa10.21□□□□□ -0.77
CLN3-251ENST00000636853 LINC00846Q9NV44 126 aa10.21□□□□□ -0.77
CLN3-251ENST00000636853 ATP5EP2Q5VTU8 51 aa10.21□□□□□ -0.78
CLN3-251ENST00000636853 UBE2DNLQ8IWF7 75 aa10.21□□□□□ -0.78
CLN3-251ENST00000636853 M0R378 163 aa10.2□□□□□ -0.78
CLN3-251ENST00000636853 C5orf47Q569G3 176 aa10.2□□□□□ -0.78
CLN3-251ENST00000636853 DIRC1Q969H9 104 aa10.19□□□□□ -0.78
CLN3-251ENST00000636853 DYNC2H1Q8NCM8 4307 aaKnown RBP10.19□□□□□ -0.78
CLN3-251ENST00000636853 hADV29S1A0JD25 119 aa10.18□□□□□ -0.78
CLN3-251ENST00000636853 ZNF73O43830 326 aaPredicted RBP10.18□□□□□ -0.78
CLN3-251ENST00000636853 CSMD3Q7Z407 3707 aa10.18□□□□□ -0.78
CLN3-251ENST00000636853 DNAH10Q8IVF4 4471 aa10.18□□□□□ -0.78
CLN3-251ENST00000636853 CCKP06307 115 aa10.18□□□□□ -0.78
CLN3-251ENST00000636853 SERTAD4-AS1Q5TG53 156 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 203.1 ms