RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 Q6ZN92 141 aa8.25□□□□□ -1.09
CLN3-249ENST00000636685 ATOH7Q8N100 152 aa8.25□□□□□ -1.09
CLN3-249ENST00000636685 NRACQ8N912 160 aa8.25□□□□□ -1.09
CLN3-249ENST00000636685 PMCHL2Q9BQD1 86 aa8.25□□□□□ -1.09
CLN3-249ENST00000636685 A0A096LNJ9 63 aa8.24□□□□□ -1.09
CLN3-249ENST00000636685 NDUFC2-KCTD14E9PQ53 114 aa8.24□□□□□ -1.09
CLN3-249ENST00000636685 ATP5LO75964 103 aa8.24□□□□□ -1.09
CLN3-249ENST00000636685 G0S2P27469 103 aa8.24□□□□□ -1.09
CLN3-249ENST00000636685 POLR2KP53803 58 aaKnown RBP8.24□□□□□ -1.09
CLN3-249ENST00000636685 KRTAP19-2Q3LHN2 52 aa8.24□□□□□ -1.09
CLN3-249ENST00000636685 SNHG12Q9BXW3 62 aa8.24□□□□□ -1.09
CLN3-249ENST00000636685 CSDC2Q9Y534 153 aaKnown RBP8.24□□□□□ -1.09
CLN3-249ENST00000636685 LINC01549A6NIU2 74 aa8.23□□□□□ -1.09
CLN3-249ENST00000636685 KRTAP10-6P60371 365 aaPredicted RBP8.23□□□□□ -1.09
CLN3-249ENST00000636685 RPL32P62910 135 aaKnown RBP8.23□□□□□ -1.09
CLN3-249ENST00000636685 FAM229BQ4G0N7 80 aa8.23□□□□□ -1.09
CLN3-249ENST00000636685 ORMDL2Q53FV1 153 aa8.23□□□□□ -1.09
CLN3-249ENST00000636685 IGKV2D-26A0A0A0MRZ7 120 aa8.22□□□□□ -1.09
CLN3-249ENST00000636685 IGHV3OR16-9A0A0B4J2B5 98 aa8.22□□□□□ -1.09
CLN3-249ENST00000636685 KIAA0087Q14695 138 aa8.22□□□□□ -1.09
CLN3-249ENST00000636685 TRBV27A0A0K0K1C4 114 aa8.21□□□□□ -1.1
CLN3-249ENST00000636685 H0Y8G0 127 aa8.21□□□□□ -1.1
CLN3-249ENST00000636685 SLC25A34Q6PIV7 304 aa8.21□□□□□ -1.1
CLN3-249ENST00000636685 C2orf82Q6UX34 121 aa8.21□□□□□ -1.1
CLN3-249ENST00000636685 FP248Q71RG6 208 aaPredicted RBP8.21□□□□□ -1.1
CLN3-249ENST00000636685 SMIM2Q9BVW6 85 aa8.21□□□□□ -1.1
CLN3-249ENST00000636685 TRBV30A0A0K0K1B3 111 aa8.2□□□□□ -1.1
CLN3-249ENST00000636685 SUMO2P61956 95 aaKnown RBP8.2□□□□□ -1.1
CLN3-249ENST00000636685 LINC00469Q8N7U9 141 aa8.2□□□□□ -1.1
CLN3-249ENST00000636685 SSPOA2VEC9 5147 aa8.19□□□□□ -1.1
CLN3-249ENST00000636685 A0A1B0GV90 55 aa8.19□□□□□ -1.1
CLN3-249ENST00000636685 SMAGPQ0VAQ4 97 aa8.19□□□□□ -1.1
CLN3-249ENST00000636685 COL5A1-AS1Q5SY13 56 aa8.19□□□□□ -1.1
CLN3-249ENST00000636685 VCYO14598 125 aa8.18□□□□□ -1.1
CLN3-249ENST00000636685 COX8AP10176 69 aa8.18□□□□□ -1.1
CLN3-249ENST00000636685 TCAPO15273 167 aa8.17□□□□□ -1.1
CLN3-249ENST00000636685 MRPL55Q7Z7F7 128 aaKnown RBP8.17□□□□□ -1.1
CLN3-249ENST00000636685 XAGE1AQ9HD64 81 aa8.17□□□□□ -1.1
CLN3-249ENST00000636685 TRAV12-1A0A0B4J245 112 aa8.16□□□□□ -1.1
CLN3-249ENST00000636685 RPL37AP8A6NKH3 93 aa8.16□□□□□ -1.1
CLN3-249ENST00000636685 DLEU1O43261 78 aa8.16□□□□□ -1.1
CLN3-249ENST00000636685 KRTAP13-1Q8IUC0 172 aa8.16□□□□□ -1.1
CLN3-249ENST00000636685 FAM104AQ969W3 186 aa8.16□□□□□ -1.1
CLN3-249ENST00000636685 TOMM6Q96B49 74 aa8.16□□□□□ -1.1
CLN3-249ENST00000636685 SCGB3A1Q96QR1 104 aa8.16□□□□□ -1.1
CLN3-249ENST00000636685 TIMM21Q9BVV7 248 aa8.16□□□□□ -1.1
CLN3-249ENST00000636685 DPM2O94777 84 aa8.15□□□□□ -1.1
CLN3-249ENST00000636685 IGKCP01834 107 aa8.15□□□□□ -1.1
CLN3-249ENST00000636685 BATFQ16520 125 aa8.15□□□□□ -1.1
CLN3-249ENST00000636685 C3orf22Q8N5N4 141 aa8.15□□□□□ -1.1
CLN3-249ENST00000636685 UBE2AP49459 152 aa8.14□□□□□ -1.11
CLN3-249ENST00000636685 KIR2DL4Q99706 377 aa8.14□□□□□ -1.11
CLN3-249ENST00000636685 TP73-AS1Q9UF72 201 aa8.14□□□□□ -1.11
CLN3-249ENST00000636685 ERASQ7Z444 233 aa8.13□□□□□ -1.11
CLN3-249ENST00000636685 LINC00167Q96N53 147 aa8.13□□□□□ -1.11
CLN3-249ENST00000636685 USH2AO75445 5202 aa8.13□□□□□ -1.11
CLN3-249ENST00000636685 PLNP26678 52 aa8.12□□□□□ -1.11
CLN3-249ENST00000636685 HINT1P49773 126 aaPredicted RBP8.12□□□□□ -1.11
CLN3-249ENST00000636685 RPL39P62891 51 aaKnown RBP8.12□□□□□ -1.11
CLN3-249ENST00000636685 ANKRD39Q53RE8 183 aa8.12□□□□□ -1.11
CLN3-249ENST00000636685 C2orf66Q6UXQ4 117 aa8.12□□□□□ -1.11
CLN3-249ENST00000636685 BOD1L2Q8IYS8 172 aa8.12□□□□□ -1.11
CLN3-249ENST00000636685 TMEM141Q96I45 108 aa8.12□□□□□ -1.11
CLN3-249ENST00000636685 CYSLTR1Q9Y271 337 aa8.12□□□□□ -1.11
CLN3-249ENST00000636685 GAGE10A6NGK3 116 aa8.11□□□□□ -1.11
CLN3-249ENST00000636685 SPAG11AQ6PDA7 123 aa8.11□□□□□ -1.11
CLN3-249ENST00000636685 PAPPA-AS1Q5QFB9 102 aa8.1□□□□□ -1.11
CLN3-249ENST00000636685 CHTOPQ9Y3Y2 248 aaKnown RBP8.1□□□□□ -1.11
CLN3-249ENST00000636685 F8VRH5 84 aa8.09□□□□□ -1.11
CLN3-249ENST00000636685 FLGP20930 4061 aaPredicted RBP8.08□□□□□ -1.12
CLN3-249ENST00000636685 SEC11AP67812 179 aa8.08□□□□□ -1.12
CLN3-249ENST00000636685 BVES-AS1Q5T3Y7 98 aa8.08□□□□□ -1.12
CLN3-249ENST00000636685 TIMM17AQ99595 171 aa8.08□□□□□ -1.12
CLN3-249ENST00000636685 HIGD1BQ9P298 99 aa8.08□□□□□ -1.12
CLN3-249ENST00000636685 M0R2T5 61 aa8.07□□□□□ -1.12
CLN3-249ENST00000636685 NMUP48645 174 aa8.07□□□□□ -1.12
CLN3-249ENST00000636685 XP32Q5T750 250 aa8.07□□□□□ -1.12
CLN3-249ENST00000636685 ZC2HC1BQ5TFG8 222 aa8.07□□□□□ -1.12
CLN3-249ENST00000636685 C2orf91Q6ZV80 131 aa8.07□□□□□ -1.12
CLN3-249ENST00000636685 IGIPA6NJ69 53 aa8.06□□□□□ -1.12
CLN3-249ENST00000636685 PRLHP81277 87 aa8.06□□□□□ -1.12
CLN3-249ENST00000636685 MRPS36P82909 103 aaKnown RBP8.06□□□□□ -1.12
CLN3-249ENST00000636685 HSD52Q0P140 79 aa8.06□□□□□ -1.12
CLN3-249ENST00000636685 PMVKQ15126 192 aa8.06□□□□□ -1.12
CLN3-249ENST00000636685 C4orf48Q5BLP8 95 aa8.06□□□□□ -1.12
CLN3-249ENST00000636685 SPANXA1Q9NS26 97 aa8.06□□□□□ -1.12
CLN3-249ENST00000636685 A6NDN8 102 aa8.05□□□□□ -1.12
CLN3-249ENST00000636685 NPSP0C0P6 89 aa8.05□□□□□ -1.12
CLN3-249ENST00000636685 TOMM7Q9P0U1 55 aa8.05□□□□□ -1.12
CLN3-249ENST00000636685 FCGBPQ9Y6R7 5405 aaPredicted RBP8.04□□□□□ -1.12
CLN3-249ENST00000636685 CKS1BP61024 79 aa8.04□□□□□ -1.12
CLN3-249ENST00000636685 PCP2Q8IVA1 136 aa8.04□□□□□ -1.12
CLN3-249ENST00000636685 DAND5Q8N907 189 aa8.04□□□□□ -1.12
CLN3-249ENST00000636685 CST9LQ9H4G1 147 aa8.04□□□□□ -1.12
CLN3-249ENST00000636685 PRSS2P07478 247 aa8.03□□□□□ -1.12
CLN3-249ENST00000636685 HERVK_113P61574 105 aa8.03□□□□□ -1.12
CLN3-249ENST00000636685 TAL2Q16559 108 aa8.03□□□□□ -1.12
CLN3-249ENST00000636685 PYGO1Q9Y3Y4 419 aa8.03□□□□□ -1.12
CLN3-249ENST00000636685 E9PLD3 99 aa8.02□□□□□ -1.13
CLN3-249ENST00000636685 PLEKHB2Q96CS7 222 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms