RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 FAM19A1Q7Z5A9 133 aa9.37□□□□□ -0.91
CLN3-246ENST00000636228 MUC17Q685J3 4493 aa9.37□□□□□ -0.91
CLN3-246ENST00000636228 H3BRM9 83 aa9.36□□□□□ -0.91
CLN3-246ENST00000636228 NDUFA6P56556 154 aa9.36□□□□□ -0.91
CLN3-246ENST00000636228 FAM229BQ4G0N7 80 aa9.36□□□□□ -0.91
CLN3-246ENST00000636228 A0A096LNJ9 63 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 IGKV2D-26A0A0A0MRZ7 120 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 LINC01549A6NIU2 74 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 VPREB1P12018 145 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 LINC00310P59036 64 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 BAGE3Q86Y29 109 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 Q8NDZ9 215 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 CHCHD1Q96BP2 118 aaKnown RBP9.35□□□□□ -0.91
CLN3-246ENST00000636228 ZNF625Q96I27 306 aaPredicted RBP9.35□□□□□ -0.91
CLN3-246ENST00000636228 KRTAP9-2Q9BYQ4 174 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 TMEM126AQ9H061 195 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 SND1-IT1Q9HBX3 110 aa9.35□□□□□ -0.91
CLN3-246ENST00000636228 IGLV5-39A0A0G2JS06 123 aa9.34□□□□□ -0.91
CLN3-246ENST00000636228 IGLC3P0DOY3 106 aa9.34□□□□□ -0.91
CLN3-246ENST00000636228 SERF1AO75920 110 aa9.33□□□□□ -0.92
CLN3-246ENST00000636228 ZNF22P17026 224 aaPredicted RBP9.33□□□□□ -0.92
CLN3-246ENST00000636228 ERG28Q9UKR5 140 aa9.33□□□□□ -0.92
CLN3-246ENST00000636228 M0R378 163 aa9.32□□□□□ -0.92
CLN3-246ENST00000636228 LCE2AQ5TA79 106 aaPredicted RBP9.32□□□□□ -0.92
CLN3-246ENST00000636228 C3orf22Q8N5N4 141 aa9.32□□□□□ -0.92
CLN3-246ENST00000636228 CDIP1Q9H305 208 aa9.32□□□□□ -0.92
CLN3-246ENST00000636228 IGLV7-46A0A075B6I9 117 aa9.31□□□□□ -0.92
CLN3-246ENST00000636228 HBDP02042 147 aa9.31□□□□□ -0.92
CLN3-246ENST00000636228 PMCHL1Q16048 86 aa9.31□□□□□ -0.92
CLN3-246ENST00000636228 PLEKHB2Q96CS7 222 aa9.31□□□□□ -0.92
CLN3-246ENST00000636228 HSBP1O75506 76 aa9.3□□□□□ -0.92
CLN3-246ENST00000636228 RPL24P83731 157 aaKnown RBP9.3□□□□□ -0.92
CLN3-246ENST00000636228 COA6Q5JTJ3 125 aaKnown RBP9.3□□□□□ -0.92
CLN3-246ENST00000636228 FAM19A2Q8N3H0 131 aa9.28□□□□□ -0.92
CLN3-246ENST00000636228 HIGD2AQ9BW72 106 aa9.28□□□□□ -0.92
CLN3-246ENST00000636228 C11orf86A6NJI1 115 aa9.27□□□□□ -0.93
CLN3-246ENST00000636228 TPRXLQ17RH7 258 aa9.27□□□□□ -0.93
CLN3-246ENST00000636228 A0A0U1RRA0 63 aa9.26□□□□□ -0.93
CLN3-246ENST00000636228 COX17Q14061 63 aa9.26□□□□□ -0.93
CLN3-246ENST00000636228 TMEM170BQ5T4T1 132 aa9.26□□□□□ -0.93
CLN3-246ENST00000636228 LINC00158P58513 81 aa9.25□□□□□ -0.93
CLN3-246ENST00000636228 PPDPFQ9H3Y8 114 aa9.25□□□□□ -0.93
CLN3-246ENST00000636228 SPRR4Q96PI1 79 aa9.23□□□□□ -0.93
CLN3-246ENST00000636228 LEPROTL1O95214 131 aa9.22□□□□□ -0.93
CLN3-246ENST00000636228 DAND5Q8N907 189 aa9.21□□□□□ -0.94
CLN3-246ENST00000636228 IFI27L1Q96BM0 104 aa9.21□□□□□ -0.94
CLN3-246ENST00000636228 HSPB8Q9UJY1 196 aa9.2□□□□□ -0.94
CLN3-246ENST00000636228 CHTOPQ9Y3Y2 248 aaKnown RBP9.2□□□□□ -0.94
CLN3-246ENST00000636228 S100A6P06703 90 aa9.19□□□□□ -0.94
CLN3-246ENST00000636228 FABP4P15090 132 aa9.19□□□□□ -0.94
CLN3-246ENST00000636228 CTAG1AP78358 180 aa9.19□□□□□ -0.94
CLN3-246ENST00000636228 SMIM13P0DJ93 91 aa9.18□□□□□ -0.94
CLN3-246ENST00000636228 SPAG11AQ6PDA7 123 aa9.18□□□□□ -0.94
CLN3-246ENST00000636228 SFTA2Q6UW10 78 aa9.18□□□□□ -0.94
CLN3-246ENST00000636228 HIST3H2BBQ8N257 126 aa9.18□□□□□ -0.94
CLN3-246ENST00000636228 TRAV12-1A0A0B4J245 112 aa9.17□□□□□ -0.94
CLN3-246ENST00000636228 TMEM223A0PJW6 202 aa9.17□□□□□ -0.94
CLN3-246ENST00000636228 NCR3O14931 201 aa9.17□□□□□ -0.94
CLN3-246ENST00000636228 C4orf48Q5BLP8 95 aa9.17□□□□□ -0.94
CLN3-246ENST00000636228 BOD1L2Q8IYS8 172 aa9.17□□□□□ -0.94
CLN3-246ENST00000636228 Q8NBF4 154 aa9.17□□□□□ -0.94
CLN3-246ENST00000636228 C5orf52A6NGY3 159 aa9.16□□□□□ -0.94
CLN3-246ENST00000636228 SMCR5Q8TEV8 140 aa9.16□□□□□ -0.94
CLN3-246ENST00000636228 SNRPEP62304 92 aaKnown RBP9.15□□□□□ -0.94
CLN3-246ENST00000636228 MEIG1Q5JSS6 88 aa9.14□□□□□ -0.95
CLN3-246ENST00000636228 MIR7-3HGQ8N6C7 128 aa9.14□□□□□ -0.95
CLN3-246ENST00000636228 MAP1LC3CQ9BXW4 147 aa9.14□□□□□ -0.95
CLN3-246ENST00000636228 ZNF706Q9Y5V0 76 aaPredicted RBP9.14□□□□□ -0.95
CLN3-246ENST00000636228 PRYO14603 147 aa9.13□□□□□ -0.95
CLN3-246ENST00000636228 LINC00337Q8N6G1 96 aa9.13□□□□□ -0.95
CLN3-246ENST00000636228 HIST1H2BLQ99880 126 aa9.13□□□□□ -0.95
CLN3-246ENST00000636228 SYS1-DBNDD2H3BUS1 97 aa9.12□□□□□ -0.95
CLN3-246ENST00000636228 S100A2P29034 98 aa9.12□□□□□ -0.95
CLN3-246ENST00000636228 SPRR1AP35321 89 aa9.12□□□□□ -0.95
CLN3-246ENST00000636228 KRTAP13-3Q3SY46 172 aa9.12□□□□□ -0.95
CLN3-246ENST00000636228 FP248Q71RG6 208 aaPredicted RBP9.12□□□□□ -0.95
CLN3-246ENST00000636228 KCNQ1DNQ9H478 68 aa9.12□□□□□ -0.95
CLN3-246ENST00000636228 TRBV10-3A0A0K0K1G6 114 aa9.11□□□□□ -0.95
CLN3-246ENST00000636228 KRTAP9-6A0A140TA67 174 aa9.11□□□□□ -0.95
CLN3-246ENST00000636228 ETDCA0A1B0GVM5 59 aa9.11□□□□□ -0.95
CLN3-246ENST00000636228 KRTAP4-16G5E9R7 235 aaPredicted RBP9.11□□□□□ -0.95
CLN3-246ENST00000636228 H0Y8G0 127 aa9.11□□□□□ -0.95
CLN3-246ENST00000636228 C3orf79P0CE67 100 aa9.11□□□□□ -0.95
CLN3-246ENST00000636228 TMA7Q9Y2S6 64 aaKnown RBP9.11□□□□□ -0.95
CLN3-246ENST00000636228 GAGE2AQ6NT46 116 aa9.1□□□□□ -0.95
CLN3-246ENST00000636228 PET117Q6UWS5 81 aa9.09□□□□□ -0.95
CLN3-246ENST00000636228 KRTAP4-1Q9BYQ7 146 aa9.09□□□□□ -0.95
CLN3-246ENST00000636228 IGLV9-49A0A0B4J1Y8 123 aa9.08□□□□□ -0.96
CLN3-246ENST00000636228 ERC2-IT1O76042 136 aa9.08□□□□□ -0.96
CLN3-246ENST00000636228 KRTDAPP60985 99 aa9.08□□□□□ -0.96
CLN3-246ENST00000636228 LINC01545Q5VT33 79 aa9.08□□□□□ -0.96
CLN3-246ENST00000636228 NDUFA12Q9UI09 145 aa9.08□□□□□ -0.96
CLN3-246ENST00000636228 SPINK1P00995 79 aa9.07□□□□□ -0.96
CLN3-246ENST00000636228 HERV-K104P63124 156 aa9.07□□□□□ -0.96
CLN3-246ENST00000636228 MOBPQ13875 183 aa9.07□□□□□ -0.96
CLN3-246ENST00000636228 B5MCH6 92 aa9.06□□□□□ -0.96
CLN3-246ENST00000636228 DPM2O94777 84 aa9.06□□□□□ -0.96
CLN3-246ENST00000636228 PLNP26678 52 aa9.06□□□□□ -0.96
CLN3-246ENST00000636228 ASB16-AS1Q495Z4 193 aa9.06□□□□□ -0.96
CLN3-246ENST00000636228 LINC00483Q53H64 154 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 164.9 ms