RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.42□□□□□ -0.9
LIMS3-206ENST00000631420 MUSTN1Q8IVN3 82 aa9.41□□□□□ -0.9
LIMS3-206ENST00000631420 LINC00308Q8TCZ7 52 aa9.41□□□□□ -0.9
LIMS3-206ENST00000631420 HNRNPA3P51991 378 aaKnown RBP9.41□□□□□ -0.9
LIMS3-206ENST00000631420 Q8NDZ9 215 aa9.41□□□□□ -0.9
LIMS3-206ENST00000631420 HIST1H4GQ99525 98 aa9.41□□□□□ -0.9
LIMS3-206ENST00000631420 FAM30AQ9NZY2 134 aa9.41□□□□□ -0.9
LIMS3-206ENST00000631420 FAM168BA1KXE4 195 aa9.4□□□□□ -0.9
LIMS3-206ENST00000631420 LOC107984156A0A0G2JMH3 177 aa9.38□□□□□ -0.91
LIMS3-206ENST00000631420 A0A1W2PNN7 141 aa9.38□□□□□ -0.91
LIMS3-206ENST00000631420 Q6ZVH6 145 aa9.38□□□□□ -0.91
LIMS3-206ENST00000631420 KRTAP7-1Q8IUC3 87 aa9.38□□□□□ -0.91
LIMS3-206ENST00000631420 ARL17AQ8IVW1 177 aa9.38□□□□□ -0.91
LIMS3-206ENST00000631420 DPH3Q96FX2 82 aa9.38□□□□□ -0.91
LIMS3-206ENST00000631420 PKIGQ9Y2B9 76 aa9.38□□□□□ -0.91
LIMS3-206ENST00000631420 EPPK1P58107 5090 aaKnown RBP9.38□□□□□ -0.91
LIMS3-206ENST00000631420 SERTAD4-AS1Q5TG53 156 aa9.37□□□□□ -0.91
LIMS3-206ENST00000631420 SPACA4Q8TDM5 124 aa9.37□□□□□ -0.91
LIMS3-206ENST00000631420 IFITM1P13164 125 aa9.37□□□□□ -0.91
LIMS3-206ENST00000631420 CTAG1AP78358 180 aa9.37□□□□□ -0.91
LIMS3-206ENST00000631420 PRR3P79522 188 aaKnown RBP9.37□□□□□ -0.91
LIMS3-206ENST00000631420 LINC00474Q9P2X8 69 aa9.36□□□□□ -0.91
LIMS3-206ENST00000631420 TAL2Q16559 108 aa9.35□□□□□ -0.91
LIMS3-206ENST00000631420 A0A087WYN8 130 aa9.34□□□□□ -0.91
LIMS3-206ENST00000631420 VPREB1P12018 145 aa9.34□□□□□ -0.91
LIMS3-206ENST00000631420 DDTP30046 118 aa9.34□□□□□ -0.91
LIMS3-206ENST00000631420 HSD52Q0P140 79 aa9.34□□□□□ -0.91
LIMS3-206ENST00000631420 Q6ZSA8 131 aa9.34□□□□□ -0.91
LIMS3-206ENST00000631420 FAM19A5Q7Z5A7 132 aaPredicted RBP9.34□□□□□ -0.91
LIMS3-206ENST00000631420 CEND1Q8N111 149 aa9.34□□□□□ -0.91
LIMS3-206ENST00000631420 HAMPP81172 84 aa9.33□□□□□ -0.92
LIMS3-206ENST00000631420 PLA2G2DQ9UNK4 145 aa9.33□□□□□ -0.92
LIMS3-206ENST00000631420 A4D1N5 150 aa9.33□□□□□ -0.92
LIMS3-206ENST00000631420 PCP4L1A6NKN8 68 aa9.33□□□□□ -0.92
LIMS3-206ENST00000631420 FXYD2P54710 66 aa9.32□□□□□ -0.92
LIMS3-206ENST00000631420 C22orf24Q9Y442 160 aa9.32□□□□□ -0.92
LIMS3-206ENST00000631420 APOBP04114 4563 aaKnown RBP9.32□□□□□ -0.92
LIMS3-206ENST00000631420 NCR3O14931 201 aa9.31□□□□□ -0.92
LIMS3-206ENST00000631420 RPL24P83731 157 aaKnown RBP9.31□□□□□ -0.92
LIMS3-206ENST00000631420 CIRBP-AS1Q8TBR5 109 aa9.31□□□□□ -0.92
LIMS3-206ENST00000631420 COPS9Q8WXC6 57 aa9.31□□□□□ -0.92
LIMS3-206ENST00000631420 PPDPFQ9H3Y8 114 aa9.31□□□□□ -0.92
LIMS3-206ENST00000631420 IGKV2-28A0A075B6P5 120 aa9.3□□□□□ -0.92
LIMS3-206ENST00000631420 NDUFC2O95298 119 aa9.3□□□□□ -0.92
LIMS3-206ENST00000631420 IGKV2D-28P01615 120 aa9.3□□□□□ -0.92
LIMS3-206ENST00000631420 HINT1P49773 126 aaPredicted RBP9.3□□□□□ -0.92
LIMS3-206ENST00000631420 PLAC8Q9NZF1 115 aa9.3□□□□□ -0.92
LIMS3-206ENST00000631420 EPM2AB3EWF7 344 aa9.29□□□□□ -0.92
LIMS3-206ENST00000631420 SCXQ7RTU7 201 aa9.29□□□□□ -0.92
LIMS3-206ENST00000631420 PHF5AQ7RTV0 110 aaKnown RBP9.29□□□□□ -0.92
LIMS3-206ENST00000631420 IGLV5-37A0A075B6J1 123 aa9.29□□□□□ -0.92
LIMS3-206ENST00000631420 BVES-AS1Q5T3Y7 98 aa9.29□□□□□ -0.92
LIMS3-206ENST00000631420 NKAPP1Q8N9T2 125 aa9.29□□□□□ -0.92
LIMS3-206ENST00000631420 GAGE10A6NGK3 116 aa9.28□□□□□ -0.92
LIMS3-206ENST00000631420 M0QXV9 152 aa9.28□□□□□ -0.92
LIMS3-206ENST00000631420 XGP55808 180 aa9.27□□□□□ -0.93
LIMS3-206ENST00000631420 LINC00337Q8N6G1 96 aa9.27□□□□□ -0.93
LIMS3-206ENST00000631420 C7orf33Q8WU49 177 aa9.27□□□□□ -0.93
LIMS3-206ENST00000631420 M0R378 163 aa9.26□□□□□ -0.93
LIMS3-206ENST00000631420 CFC1BP0CG36 223 aa9.26□□□□□ -0.93
LIMS3-206ENST00000631420 CFC1P0CG37 223 aa9.26□□□□□ -0.93
LIMS3-206ENST00000631420 MRPL55Q7Z7F7 128 aaKnown RBP9.26□□□□□ -0.93
LIMS3-206ENST00000631420 LINC00167Q96N53 147 aa9.26□□□□□ -0.93
LIMS3-206ENST00000631420 TRBV10-2A0A0K0K1G8 114 aa9.24□□□□□ -0.93
LIMS3-206ENST00000631420 RPL37AP8A6NKH3 93 aa9.24□□□□□ -0.93
LIMS3-206ENST00000631420 KRTAP11-1Q8IUC1 163 aa9.24□□□□□ -0.93
LIMS3-206ENST00000631420 NHP2Q9NX24 153 aaKnown RBP9.24□□□□□ -0.93
LIMS3-206ENST00000631420 OR13C6PQ8NH95 151 aa9.24□□□□□ -0.93
LIMS3-206ENST00000631420 TRBV10-3A0A0K0K1G6 114 aa9.23□□□□□ -0.93
LIMS3-206ENST00000631420 TMEM238LA0A1B0GVL6 79 aa9.23□□□□□ -0.93
LIMS3-206ENST00000631420 A6NDN8 102 aa9.23□□□□□ -0.93
LIMS3-206ENST00000631420 A6NJY4 79 aa9.23□□□□□ -0.93
LIMS3-206ENST00000631420 M0R143 59 aa9.23□□□□□ -0.93
LIMS3-206ENST00000631420 BATFQ16520 125 aa9.23□□□□□ -0.93
LIMS3-206ENST00000631420 K7ERJ3 54 aa9.22□□□□□ -0.93
LIMS3-206ENST00000631420 LBHQ53QV2 105 aaPredicted RBP9.22□□□□□ -0.93
LIMS3-206ENST00000631420 S100A7L2Q5SY68 101 aa9.22□□□□□ -0.93
LIMS3-206ENST00000631420 IGLV1-50A0A075B6I6 118 aa9.21□□□□□ -0.93
LIMS3-206ENST00000631420 IGLV6-57P01721 117 aa9.21□□□□□ -0.93
LIMS3-206ENST00000631420 RAB37Q96AX2 223 aa9.21□□□□□ -0.93
LIMS3-206ENST00000631420 TRAV13-2A0A0B4J235 113 aa9.2□□□□□ -0.94
LIMS3-206ENST00000631420 A0A0B4J2C4 111 aa9.2□□□□□ -0.94
LIMS3-206ENST00000631420 A0A1B0GWB2 263 aa9.2□□□□□ -0.94
LIMS3-206ENST00000631420 UBE2BP63146 152 aa9.2□□□□□ -0.94
LIMS3-206ENST00000631420 SNHG12Q9BXW3 62 aa9.2□□□□□ -0.94
LIMS3-206ENST00000631420 RYR1P21817 5038 aa9.19□□□□□ -0.94
LIMS3-206ENST00000631420 TMEM126AQ9H061 195 aa9.19□□□□□ -0.94
LIMS3-206ENST00000631420 H7C2G1 150 aa9.18□□□□□ -0.94
LIMS3-206ENST00000631420 SMR3BP02814 79 aaPredicted RBP9.18□□□□□ -0.94
LIMS3-206ENST00000631420 RPL13AP40429 203 aaKnown RBP9.18□□□□□ -0.94
LIMS3-206ENST00000631420 PRO1854Q9UHT4 67 aa9.18□□□□□ -0.94
LIMS3-206ENST00000631420 FAT1Q14517 4588 aa9.18□□□□□ -0.94
LIMS3-206ENST00000631420 KIAA1109Q2LD37 5005 aa9.18□□□□□ -0.94
LIMS3-206ENST00000631420 HSPG2P98160 4391 aa9.17□□□□□ -0.94
LIMS3-206ENST00000631420 KCNQ1DNQ9H478 68 aa9.16□□□□□ -0.94
LIMS3-206ENST00000631420 SMIM11BQ8TCY0 68 aa9.16□□□□□ -0.94
LIMS3-206ENST00000631420 BIRC6Q9NR09 4857 aa9.15□□□□□ -0.94
LIMS3-206ENST00000631420 TRAV23DV6A0A075B6W5 121 aa9.15□□□□□ -0.95
LIMS3-206ENST00000631420 CDK2AP2O75956 126 aa9.15□□□□□ -0.95
LIMS3-206ENST00000631420 PSORS1C2Q9UIG4 136 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms