RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 CST9LQ9H4G1 147 aa5.57□□□□□ -1.52
VRK3-224ENST00000601849 TMEM238LA0A1B0GVL6 79 aa5.56□□□□□ -1.52
VRK3-224ENST00000601849 FABP9Q0Z7S8 132 aa5.56□□□□□ -1.52
VRK3-224ENST00000601849 SFTA2Q6UW10 78 aa5.56□□□□□ -1.52
VRK3-224ENST00000601849 LINC00337Q8N6G1 96 aa5.56□□□□□ -1.52
VRK3-224ENST00000601849 TMEM126AQ9H061 195 aa5.56□□□□□ -1.52
VRK3-224ENST00000601849 LCE2AQ5TA79 106 aaPredicted RBP5.55□□□□□ -1.52
VRK3-224ENST00000601849 FA2HQ7L5A8 372 aa5.55□□□□□ -1.52
VRK3-224ENST00000601849 PPDPFQ9H3Y8 114 aa5.55□□□□□ -1.52
VRK3-224ENST00000601849 TRAPPC1Q9Y5R8 145 aa5.55□□□□□ -1.52
VRK3-224ENST00000601849 COLCA2A8K830 154 aa5.54□□□□□ -1.52
VRK3-224ENST00000601849 NDUFA6P56556 154 aa5.54□□□□□ -1.52
VRK3-224ENST00000601849 PRLHP81277 87 aa5.54□□□□□ -1.52
VRK3-224ENST00000601849 PLEKHB2Q96CS7 222 aa5.54□□□□□ -1.52
VRK3-224ENST00000601849 ERG28Q9UKR5 140 aa5.54□□□□□ -1.52
VRK3-224ENST00000601849 ZNF706Q9Y5V0 76 aaPredicted RBP5.54□□□□□ -1.52
VRK3-224ENST00000601849 LINC01546A6NGU7 62 aa5.53□□□□□ -1.52
VRK3-224ENST00000601849 FP248Q71RG6 208 aaPredicted RBP5.53□□□□□ -1.52
VRK3-224ENST00000601849 HIGD2AQ9BW72 106 aa5.53□□□□□ -1.52
VRK3-224ENST00000601849 SND1-IT1Q9HBX3 110 aa5.53□□□□□ -1.52
VRK3-224ENST00000601849 TMEM238C9JI98 176 aa5.52□□□□□ -1.53
VRK3-224ENST00000601849 VPREB1P12018 145 aa5.52□□□□□ -1.53
VRK3-224ENST00000601849 S100A12P80511 92 aa5.52□□□□□ -1.53
VRK3-224ENST00000601849 SVIPQ8NHG7 77 aa5.52□□□□□ -1.53
VRK3-224ENST00000601849 M0R378 163 aa5.51□□□□□ -1.53
VRK3-224ENST00000601849 C18orf32Q8TCD1 76 aa5.51□□□□□ -1.53
VRK3-224ENST00000601849 IGLV5-39A0A0G2JS06 123 aa5.5□□□□□ -1.53
VRK3-224ENST00000601849 KRTAP9-6A0A140TA67 174 aa5.5□□□□□ -1.53
VRK3-224ENST00000601849 TRGC2P03986 189 aa5.5□□□□□ -1.53
VRK3-224ENST00000601849 IGLC3P0DOY3 106 aa5.5□□□□□ -1.53
VRK3-224ENST00000601849 LINC01547P58512 204 aaPredicted RBP5.5□□□□□ -1.53
VRK3-224ENST00000601849 LINC00158P58513 81 aa5.5□□□□□ -1.53
VRK3-224ENST00000601849 URB1-AS1Q96HZ7 61 aa5.5□□□□□ -1.53
VRK3-224ENST00000601849 ZNF625Q96I27 306 aaPredicted RBP5.5□□□□□ -1.53
VRK3-224ENST00000601849 NDUFA12Q9UI09 145 aa5.5□□□□□ -1.53
VRK3-224ENST00000601849 TMEM170BQ5T4T1 132 aa5.49□□□□□ -1.53
VRK3-224ENST00000601849 C3orf22Q8N5N4 141 aa5.49□□□□□ -1.53
VRK3-224ENST00000601849 SPINK1P00995 79 aa5.48□□□□□ -1.53
VRK3-224ENST00000601849 LINC00614P0C842 121 aa5.48□□□□□ -1.53
VRK3-224ENST00000601849 ZNF22P17026 224 aaPredicted RBP5.48□□□□□ -1.53
VRK3-224ENST00000601849 SEC61BP60468 96 aaKnown RBP5.48□□□□□ -1.53
VRK3-224ENST00000601849 SPRR4Q96PI1 79 aa5.48□□□□□ -1.53
VRK3-224ENST00000601849 A0A096LNJ9 63 aa5.47□□□□□ -1.53
VRK3-224ENST00000601849 LINC00587B1AMM8 73 aa5.47□□□□□ -1.53
VRK3-224ENST00000601849 HBDP02042 147 aa5.47□□□□□ -1.53
VRK3-224ENST00000601849 BAGE3Q86Y29 109 aa5.47□□□□□ -1.53
VRK3-224ENST00000601849 ETDCA0A1B0GVM5 59 aa5.46□□□□□ -1.54
VRK3-224ENST00000601849 DAND5Q8N907 189 aa5.46□□□□□ -1.54
VRK3-224ENST00000601849 PRYO14603 147 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST1H2BKO60814 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 S100A6P06703 90 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST1H2BJP06899 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST1H2BOP23527 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST1H2BBP33778 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST1H2BDP58876 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST1H2BCP62807 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST2H2BEQ16778 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.45□□□□□ -1.54
VRK3-224ENST00000601849 FAM19A2Q8N3H0 131 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 Q8NBF4 154 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST1H2BHQ93079 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 CHCHD1Q96BP2 118 aaKnown RBP5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST1H2BNQ99877 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 HIST1H2BMQ99879 126 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 FSIP2Q5CZC0 6907 aa5.45□□□□□ -1.54
VRK3-224ENST00000601849 A0A0U1RRA0 63 aa5.44□□□□□ -1.54
VRK3-224ENST00000601849 LINC00310P59036 64 aa5.44□□□□□ -1.54
VRK3-224ENST00000601849 ASB16-AS1Q495Z4 193 aa5.44□□□□□ -1.54
VRK3-224ENST00000601849 MEIG1Q5JSS6 88 aa5.44□□□□□ -1.54
VRK3-224ENST00000601849 BOD1L2Q8IYS8 172 aa5.44□□□□□ -1.54
VRK3-224ENST00000601849 SMCR5Q8TEV8 140 aa5.44□□□□□ -1.54
VRK3-224ENST00000601849 MAP1LC3CQ9BXW4 147 aa5.44□□□□□ -1.54
VRK3-224ENST00000601849 CHTOPQ9Y3Y2 248 aaKnown RBP5.44□□□□□ -1.54
VRK3-224ENST00000601849 C11orf86A6NJI1 115 aa5.43□□□□□ -1.54
VRK3-224ENST00000601849 HERV-K104P63124 156 aa5.43□□□□□ -1.54
VRK3-224ENST00000601849 PMCHL1Q16048 86 aa5.43□□□□□ -1.54
VRK3-224ENST00000601849 KRTAP13-3Q3SY46 172 aa5.43□□□□□ -1.54
VRK3-224ENST00000601849 SSBP3-AS1Q7Z2R9 100 aa5.43□□□□□ -1.54
VRK3-224ENST00000601849 KCNQ1DNQ9H478 68 aa5.43□□□□□ -1.54
VRK3-224ENST00000601849 SLC25A20O43772 301 aa5.42□□□□□ -1.54
VRK3-224ENST00000601849 SERF1AO75920 110 aa5.42□□□□□ -1.54
VRK3-224ENST00000601849 NCR3O14931 201 aa5.41□□□□□ -1.54
VRK3-224ENST00000601849 SMIM13P0DJ93 91 aa5.41□□□□□ -1.54
VRK3-224ENST00000601849 RPS29P62273 56 aaKnown RBP5.41□□□□□ -1.54
VRK3-224ENST00000601849 GAGE2AQ6NT46 116 aa5.41□□□□□ -1.54
VRK3-224ENST00000601849 Q8NDZ9 215 aa5.41□□□□□ -1.54
VRK3-224ENST00000601849 IGLV9-49A0A0B4J1Y8 123 aa5.4□□□□□ -1.54
VRK3-224ENST00000601849 MYMXA0A1B0GTQ4 84 aa5.4□□□□□ -1.54
VRK3-224ENST00000601849 TMEM223A0PJW6 202 aa5.4□□□□□ -1.54
VRK3-224ENST00000601849 HSBP1O75506 76 aa5.4□□□□□ -1.54
VRK3-224ENST00000601849 SPRR1AP35321 89 aa5.4□□□□□ -1.54
VRK3-224ENST00000601849 MIR7-3HGQ8N6C7 128 aa5.4□□□□□ -1.54
VRK3-224ENST00000601849 TRAV12-1A0A0B4J245 112 aa5.39□□□□□ -1.55
VRK3-224ENST00000601849 S100A2P29034 98 aa5.39□□□□□ -1.55
VRK3-224ENST00000601849 SNRPEP62304 92 aaKnown RBP5.39□□□□□ -1.55
VRK3-224ENST00000601849 JOSD1Q15040 202 aaPredicted RBP5.39□□□□□ -1.55
VRK3-224ENST00000601849 LINC00483Q53H64 154 aa5.39□□□□□ -1.55
VRK3-224ENST00000601849 MOBPQ13875 183 aa5.38□□□□□ -1.55
VRK3-224ENST00000601849 COA6Q5JTJ3 125 aaKnown RBP5.38□□□□□ -1.55
VRK3-224ENST00000601849 IFI27L1Q96BM0 104 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms