RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 EPM2AB3EWF7 344 aa9.09□□□□□ -0.95
UPF1-211ENST00000600868 IFITM1P13164 125 aa9.09□□□□□ -0.95
UPF1-211ENST00000600868 C2orf91Q6ZV80 131 aa9.09□□□□□ -0.95
UPF1-211ENST00000600868 A0A087WYN8 130 aa9.08□□□□□ -0.96
UPF1-211ENST00000600868 A0A1W2PNN7 141 aa9.08□□□□□ -0.96
UPF1-211ENST00000600868 SRSF9Q13242 221 aaKnown RBP eCLIP9.08□□□□□ -0.96
UPF1-211ENST00000600868 SOSTDC1Q6X4U4 206 aa9.08□□□□□ -0.96
UPF1-211ENST00000600868 LINC00308Q8TCZ7 52 aa9.08□□□□□ -0.96
UPF1-211ENST00000600868 COPS9Q8WXC6 57 aa9.08□□□□□ -0.96
UPF1-211ENST00000600868 MIEN1Q9BRT3 115 aa9.08□□□□□ -0.96
UPF1-211ENST00000600868 PRO1933Q9H354 126 aa9.08□□□□□ -0.96
UPF1-211ENST00000600868 PPDPFQ9H3Y8 114 aa9.08□□□□□ -0.96
UPF1-211ENST00000600868 PLAC8Q9NZF1 115 aa9.08□□□□□ -0.96
UPF1-211ENST00000600868 FAM168BA1KXE4 195 aa9.07□□□□□ -0.96
UPF1-211ENST00000600868 DNAH8Q96JB1 4490 aa9.06□□□□□ -0.96
UPF1-211ENST00000600868 EIF4EBP3O60516 100 aaPredicted RBP9.06□□□□□ -0.96
UPF1-211ENST00000600868 NPC2P61916 151 aa9.06□□□□□ -0.96
UPF1-211ENST00000600868 RPL24P83731 157 aaKnown RBP9.06□□□□□ -0.96
UPF1-211ENST00000600868 SERTAD4-AS1Q5TG53 156 aa9.06□□□□□ -0.96
UPF1-211ENST00000600868 SCXQ7RTU7 201 aa9.06□□□□□ -0.96
UPF1-211ENST00000600868 KRTAP7-1Q8IUC3 87 aa9.06□□□□□ -0.96
UPF1-211ENST00000600868 DYNC1H1Q14204 4646 aaKnown RBP9.05□□□□□ -0.96
UPF1-211ENST00000600868 LRP1BQ9NZR2 4599 aa9.05□□□□□ -0.96
UPF1-211ENST00000600868 IGLV5-37A0A075B6J1 123 aa9.05□□□□□ -0.96
UPF1-211ENST00000600868 VPREB1P12018 145 aa9.05□□□□□ -0.96
UPF1-211ENST00000600868 FAM19A5Q7Z5A7 132 aaPredicted RBP9.05□□□□□ -0.96
UPF1-211ENST00000600868 CIRBP-AS1Q8TBR5 109 aa9.05□□□□□ -0.96
UPF1-211ENST00000600868 HIST1H4GQ99525 98 aa9.05□□□□□ -0.96
UPF1-211ENST00000600868 TSTD3H0UI37 97 aa9.04□□□□□ -0.96
UPF1-211ENST00000600868 NDUFC2O95298 119 aa9.04□□□□□ -0.96
UPF1-211ENST00000600868 XGP55808 180 aa9.04□□□□□ -0.96
UPF1-211ENST00000600868 MUSTN1Q8IVN3 82 aa9.04□□□□□ -0.96
UPF1-211ENST00000600868 Q8NDZ9 215 aa9.04□□□□□ -0.96
UPF1-211ENST00000600868 CDK2AP2O75956 126 aa9.03□□□□□ -0.96
UPF1-211ENST00000600868 TAL2Q16559 108 aa9.03□□□□□ -0.96
UPF1-211ENST00000600868 C22orf24Q9Y442 160 aa9.03□□□□□ -0.96
UPF1-211ENST00000600868 HNRNPA3P51991 378 aaKnown RBP9.02□□□□□ -0.97
UPF1-211ENST00000600868 NKAPP1Q8N9T2 125 aa9.02□□□□□ -0.97
UPF1-211ENST00000600868 M0QXV9 152 aa9.01□□□□□ -0.97
UPF1-211ENST00000600868 TRBV10-2A0A0K0K1G8 114 aa9□□□□□ -0.97
UPF1-211ENST00000600868 M0R378 163 aa9□□□□□ -0.97
UPF1-211ENST00000600868 PRR3P79522 188 aaKnown RBP9□□□□□ -0.97
UPF1-211ENST00000600868 HAMPP81172 84 aa9□□□□□ -0.97
UPF1-211ENST00000600868 LBHQ53QV2 105 aaPredicted RBP9□□□□□ -0.97
UPF1-211ENST00000600868 MRPL55Q7Z7F7 128 aaKnown RBP9□□□□□ -0.97
UPF1-211ENST00000600868 HSD52Q0P140 79 aa8.99□□□□□ -0.97
UPF1-211ENST00000600868 PHF5AQ7RTV0 110 aaKnown RBP8.99□□□□□ -0.97
UPF1-211ENST00000600868 CEND1Q8N111 149 aa8.99□□□□□ -0.97
UPF1-211ENST00000600868 C7orf33Q8WU49 177 aa8.98□□□□□ -0.97
UPF1-211ENST00000600868 IGKV2-28A0A075B6P5 120 aa8.97□□□□□ -0.97
UPF1-211ENST00000600868 A4D1N5 150 aa8.97□□□□□ -0.97
UPF1-211ENST00000600868 NCR3O14931 201 aa8.97□□□□□ -0.97
UPF1-211ENST00000600868 IGKV2D-28P01615 120 aa8.97□□□□□ -0.97
UPF1-211ENST00000600868 LINC00167Q96N53 147 aa8.97□□□□□ -0.97
UPF1-211ENST00000600868 EPPK1P58107 5090 aaKnown RBP8.96□□□□□ -0.97
UPF1-211ENST00000600868 GAGE10A6NGK3 116 aa8.94□□□□□ -0.98
UPF1-211ENST00000600868 CTAG1AP78358 180 aa8.94□□□□□ -0.98
UPF1-211ENST00000600868 APOBP04114 4563 aaKnown RBP8.94□□□□□ -0.98
UPF1-211ENST00000600868 IGLV1-50A0A075B6I6 118 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 TMEM238LA0A1B0GVL6 79 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 A6NJY4 79 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 RPL37AP8A6NKH3 93 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 IGLV6-57P01721 117 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 DDTP30046 118 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 FXYD2P54710 66 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 UBE2BP63146 152 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 S100A7L2Q5SY68 101 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 LINC00337Q8N6G1 96 aa8.93□□□□□ -0.98
UPF1-211ENST00000600868 TRAV13-2A0A0B4J235 113 aa8.92□□□□□ -0.98
UPF1-211ENST00000600868 TRBV10-3A0A0K0K1G6 114 aa8.92□□□□□ -0.98
UPF1-211ENST00000600868 KRTAP11-1Q8IUC1 163 aa8.92□□□□□ -0.98
UPF1-211ENST00000600868 TMEM126AQ9H061 195 aa8.92□□□□□ -0.98
UPF1-211ENST00000600868 SMR3BP02814 79 aaPredicted RBP8.91□□□□□ -0.98
UPF1-211ENST00000600868 CFC1BP0CG36 223 aa8.91□□□□□ -0.98
UPF1-211ENST00000600868 CFC1P0CG37 223 aa8.91□□□□□ -0.98
UPF1-211ENST00000600868 A0A0B4J2C4 111 aa8.9□□□□□ -0.98
UPF1-211ENST00000600868 M0R143 59 aa8.9□□□□□ -0.98
UPF1-211ENST00000600868 BVES-AS1Q5T3Y7 98 aa8.9□□□□□ -0.98
UPF1-211ENST00000600868 LINC00528Q8N1L1 170 aa8.9□□□□□ -0.98
UPF1-211ENST00000600868 OR13C6PQ8NH95 151 aa8.9□□□□□ -0.98
UPF1-211ENST00000600868 KCNQ1DNQ9H478 68 aa8.9□□□□□ -0.98
UPF1-211ENST00000600868 A6NDN8 102 aa8.89□□□□□ -0.99
UPF1-211ENST00000600868 PRYO14603 147 aa8.89□□□□□ -0.99
UPF1-211ENST00000600868 PSORS1C2Q9UIG4 136 aa8.89□□□□□ -0.99
UPF1-211ENST00000600868 CBY1Q9Y3M2 126 aa8.89□□□□□ -0.99
UPF1-211ENST00000600868 HINT1P49773 126 aaPredicted RBP8.87□□□□□ -0.99
UPF1-211ENST00000600868 REG3GQ6UW15 175 aa8.87□□□□□ -0.99
UPF1-211ENST00000600868 RAB37Q96AX2 223 aa8.87□□□□□ -0.99
UPF1-211ENST00000600868 TRAV23DV6A0A075B6W5 121 aa8.86□□□□□ -0.99
UPF1-211ENST00000600868 A0A1B0GWB2 263 aa8.86□□□□□ -0.99
UPF1-211ENST00000600868 NHP2Q9NX24 153 aaKnown RBP8.86□□□□□ -0.99
UPF1-211ENST00000600868 HSPG2P98160 4391 aa8.85□□□□□ -0.99
UPF1-211ENST00000600868 FAM229AH3BQW9 127 aa8.85□□□□□ -0.99
UPF1-211ENST00000600868 SPRR1AP35321 89 aa8.85□□□□□ -0.99
UPF1-211ENST00000600868 RPL13AP40429 203 aaKnown RBP8.85□□□□□ -0.99
UPF1-211ENST00000600868 RPL37AP61513 92 aaKnown RBP8.85□□□□□ -0.99
UPF1-211ENST00000600868 C1orf137Q5JT78 98 aa8.85□□□□□ -0.99
UPF1-211ENST00000600868 BCE1O60756 84 aa8.84□□□□□ -0.99
UPF1-211ENST00000600868 PRO1854Q9UHT4 67 aa8.84□□□□□ -0.99
UPF1-211ENST00000600868 KRTAP4-16G5E9R7 235 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms