RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 DPM2O94777 84 aa9.88□□□□□ -0.83
LSM4-206ENST00000600289 SND1-IT1Q9HBX3 110 aa9.88□□□□□ -0.83
LSM4-206ENST00000600289 HERV-K104P63124 156 aa9.87□□□□□ -0.83
LSM4-206ENST00000600289 IGKCP01834 107 aa9.86□□□□□ -0.83
LSM4-206ENST00000600289 S100A1P23297 94 aa9.86□□□□□ -0.83
LSM4-206ENST00000600289 LEPROTO15243 131 aa9.85□□□□□ -0.83
LSM4-206ENST00000600289 SYS1-DBNDD2H3BUS1 97 aa9.84□□□□□ -0.83
LSM4-206ENST00000600289 HERVK_113P61574 105 aa9.84□□□□□ -0.83
LSM4-206ENST00000600289 NKAPP1Q8N9T2 125 aa9.84□□□□□ -0.83
LSM4-206ENST00000600289 DIRC1Q969H9 104 aa9.84□□□□□ -0.83
LSM4-206ENST00000600289 PLEKHB2Q96CS7 222 aa9.84□□□□□ -0.83
LSM4-206ENST00000600289 LINC00167Q96N53 147 aa9.84□□□□□ -0.83
LSM4-206ENST00000600289 NDUFA12Q9UI09 145 aa9.84□□□□□ -0.83
LSM4-206ENST00000600289 MYMXA0A1B0GTQ4 84 aa9.83□□□□□ -0.84
LSM4-206ENST00000600289 LINC00587B1AMM8 73 aa9.83□□□□□ -0.84
LSM4-206ENST00000600289 VPREB1P12018 145 aa9.83□□□□□ -0.84
LSM4-206ENST00000600289 H0Y9J4 135 aa9.82□□□□□ -0.84
LSM4-206ENST00000600289 LINC00158P58513 81 aa9.82□□□□□ -0.84
LSM4-206ENST00000600289 TSPEAR-AS2P59090 65 aa9.82□□□□□ -0.84
LSM4-206ENST00000600289 RPL24P83731 157 aaKnown RBP9.82□□□□□ -0.84
LSM4-206ENST00000600289 PMCHL2Q9BQD1 86 aa9.82□□□□□ -0.84
LSM4-206ENST00000600289 NMUP48645 174 aa9.81□□□□□ -0.84
LSM4-206ENST00000600289 LINC01545Q5VT33 79 aa9.81□□□□□ -0.84
LSM4-206ENST00000600289 PET117Q6UWS5 81 aa9.81□□□□□ -0.84
LSM4-206ENST00000600289 J3QQQ9 107 aa9.8□□□□□ -0.84
LSM4-206ENST00000600289 BCE1O60756 84 aa9.8□□□□□ -0.84
LSM4-206ENST00000600289 ATP6V1G1O75348 118 aa9.8□□□□□ -0.84
LSM4-206ENST00000600289 SMIM13P0DJ93 91 aa9.8□□□□□ -0.84
LSM4-206ENST00000600289 KRTAP10-8P60410 259 aa9.8□□□□□ -0.84
LSM4-206ENST00000600289 ZNF861PO60384 105 aa9.79□□□□□ -0.84
LSM4-206ENST00000600289 MEIG1Q5JSS6 88 aa9.79□□□□□ -0.84
LSM4-206ENST00000600289 Q8NDZ9 215 aa9.79□□□□□ -0.84
LSM4-206ENST00000600289 RPL37AP8A6NKH3 93 aa9.78□□□□□ -0.84
LSM4-206ENST00000600289 E9PLD3 99 aa9.78□□□□□ -0.84
LSM4-206ENST00000600289 FAT4Q6V0I7 4981 aa9.78□□□□□ -0.84
LSM4-206ENST00000600289 IGLV1-50A0A075B6I6 118 aa9.77□□□□□ -0.85
LSM4-206ENST00000600289 GAGE10A6NGK3 116 aa9.77□□□□□ -0.85
LSM4-206ENST00000600289 MIR7-3HGQ8N6C7 128 aa9.77□□□□□ -0.85
LSM4-206ENST00000600289 LOC107984156A0A0G2JMH3 177 aa9.76□□□□□ -0.85
LSM4-206ENST00000600289 A0A0U1RRA0 63 aa9.76□□□□□ -0.85
LSM4-206ENST00000600289 C3orf79P0CE67 100 aa9.76□□□□□ -0.85
LSM4-206ENST00000600289 LGALS3P17931 250 aaKnown RBP9.76□□□□□ -0.85
LSM4-206ENST00000600289 ARL17AQ8IVW1 177 aa9.76□□□□□ -0.85
LSM4-206ENST00000600289 RPL28P46779 137 aaKnown RBP9.75□□□□□ -0.85
LSM4-206ENST00000600289 KRTAP13-1Q8IUC0 172 aa9.75□□□□□ -0.85
LSM4-206ENST00000600289 IGKV2-28A0A075B6P5 120 aa9.74□□□□□ -0.85
LSM4-206ENST00000600289 IGKV2D-28P01615 120 aa9.74□□□□□ -0.85
LSM4-206ENST00000600289 KRTAP1-4P0C5Y4 121 aa9.74□□□□□ -0.85
LSM4-206ENST00000600289 IGKV2D-26A0A0A0MRZ7 120 aa9.73□□□□□ -0.85
LSM4-206ENST00000600289 M0R378 163 aa9.73□□□□□ -0.85
LSM4-206ENST00000600289 BOD1L2Q8IYS8 172 aa9.72□□□□□ -0.85
LSM4-206ENST00000600289 TMEM126AQ9H061 195 aa9.72□□□□□ -0.85
LSM4-206ENST00000600289 AKR1D1P51857 326 aa9.7□□□□□ -0.86
LSM4-206ENST00000600289 KRTDAPP60985 99 aa9.7□□□□□ -0.86
LSM4-206ENST00000600289 A0A0J9YXY3 114 aa9.69□□□□□ -0.86
LSM4-206ENST00000600289 C20orf202A1L168 122 aa9.69□□□□□ -0.86
LSM4-206ENST00000600289 TMEM238C9JI98 176 aa9.68□□□□□ -0.86
LSM4-206ENST00000600289 UBE2AP49459 152 aa9.68□□□□□ -0.86
LSM4-206ENST00000600289 TRBV10-2A0A0K0K1G8 114 aa9.67□□□□□ -0.86
LSM4-206ENST00000600289 HIST3H2BBQ8N257 126 aa9.67□□□□□ -0.86
LSM4-206ENST00000600289 PRR26Q8N8Z3 221 aa9.67□□□□□ -0.86
LSM4-206ENST00000600289 DAND5Q8N907 189 aa9.67□□□□□ -0.86
LSM4-206ENST00000600289 PRYO14603 147 aa9.66□□□□□ -0.86
LSM4-206ENST00000600289 TIMM17BO60830 172 aa9.66□□□□□ -0.86
LSM4-206ENST00000600289 NDUFC2O95298 119 aa9.66□□□□□ -0.86
LSM4-206ENST00000600289 RPL13AP40429 203 aaKnown RBP9.66□□□□□ -0.86
LSM4-206ENST00000600289 MIEN1Q9BRT3 115 aa9.66□□□□□ -0.86
LSM4-206ENST00000600289 LPAP08519 4548 aa9.65□□□□□ -0.86
LSM4-206ENST00000600289 NCR3O14931 201 aa9.65□□□□□ -0.86
LSM4-206ENST00000600289 SPRR1AP35321 89 aa9.65□□□□□ -0.86
LSM4-206ENST00000600289 FAM19A1Q7Z5A9 133 aa9.65□□□□□ -0.86
LSM4-206ENST00000600289 KCNQ1DNQ9H478 68 aa9.65□□□□□ -0.86
LSM4-206ENST00000600289 PRLHP81277 87 aa9.64□□□□□ -0.87
LSM4-206ENST00000600289 ADAMTSL4-AS1Q5T5F5 129 aa9.64□□□□□ -0.87
LSM4-206ENST00000600289 LITAFQ99732 161 aa9.64□□□□□ -0.87
LSM4-206ENST00000600289 SPANXB1Q9NS25 103 aaPredicted RBP9.64□□□□□ -0.87
LSM4-206ENST00000600289 LINC00337Q8N6G1 96 aa9.63□□□□□ -0.87
LSM4-206ENST00000600289 HIST1H2BLQ99880 126 aa9.63□□□□□ -0.87
LSM4-206ENST00000600289 MUC2Q02817 5179 aa9.62□□□□□ -0.87
LSM4-206ENST00000600289 TRBV10-3A0A0K0K1G6 114 aa9.62□□□□□ -0.87
LSM4-206ENST00000600289 ZNF815PA8K554 130 aa9.62□□□□□ -0.87
LSM4-206ENST00000600289 S100A2P29034 98 aa9.62□□□□□ -0.87
LSM4-206ENST00000600289 SOSTDC1Q6X4U4 206 aa9.62□□□□□ -0.87
LSM4-206ENST00000600289 KRTAP4-16G5E9R7 235 aaPredicted RBP9.61□□□□□ -0.87
LSM4-206ENST00000600289 S100A6P06703 90 aa9.61□□□□□ -0.87
LSM4-206ENST00000600289 SNRPEP62304 92 aaKnown RBP9.61□□□□□ -0.87
LSM4-206ENST00000600289 S100A12P80511 92 aa9.6□□□□□ -0.87
LSM4-206ENST00000600289 FAM229BQ4G0N7 80 aa9.6□□□□□ -0.87
LSM4-206ENST00000600289 ANKRD39Q53RE8 183 aa9.6□□□□□ -0.87
LSM4-206ENST00000600289 EIF4EBP3O60516 100 aaPredicted RBP9.59□□□□□ -0.87
LSM4-206ENST00000600289 DDTP30046 118 aa9.59□□□□□ -0.87
LSM4-206ENST00000600289 LINC00308Q8TCZ7 52 aa9.59□□□□□ -0.87
LSM4-206ENST00000600289 TTTY13Q9BZ97 58 aa9.59□□□□□ -0.87
LSM4-206ENST00000600289 A0A087X002 238 aa9.58□□□□□ -0.88
LSM4-206ENST00000600289 IGLV6-57P01721 117 aa9.58□□□□□ -0.88
LSM4-206ENST00000600289 CRYGAP11844 174 aa9.58□□□□□ -0.88
LSM4-206ENST00000600289 ATOH7Q8N100 152 aa9.58□□□□□ -0.88
LSM4-206ENST00000600289 SPANXCQ9NY87 97 aa9.58□□□□□ -0.88
LSM4-206ENST00000600289 PPDPFQ9H3Y8 114 aa9.57□□□□□ -0.88
LSM4-206ENST00000600289 NPC2P61916 151 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms