RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 MRPL55Q7Z7F7 128 aaKnown RBP6.78□□□□□ -1.32
VRK3-210ENST00000596121 MAP1LC3CQ9BXW4 147 aa6.78□□□□□ -1.32
VRK3-210ENST00000596121 TP73-AS1Q9UF72 201 aa6.78□□□□□ -1.32
VRK3-210ENST00000596121 GAGE10A6NGK3 116 aa6.77□□□□□ -1.33
VRK3-210ENST00000596121 RPL37AP8A6NKH3 93 aa6.77□□□□□ -1.33
VRK3-210ENST00000596121 IGKCP01834 107 aa6.77□□□□□ -1.33
VRK3-210ENST00000596121 SMIM13P0DJ93 91 aa6.77□□□□□ -1.33
VRK3-210ENST00000596121 VPREB1P12018 145 aa6.77□□□□□ -1.33
VRK3-210ENST00000596121 PLNP26678 52 aa6.77□□□□□ -1.33
VRK3-210ENST00000596121 COX17Q14061 63 aa6.77□□□□□ -1.33
VRK3-210ENST00000596121 LINC01600Q96MT4 127 aa6.77□□□□□ -1.33
VRK3-210ENST00000596121 HMCN2Q8NDA2 5059 aa6.77□□□□□ -1.33
VRK3-210ENST00000596121 LEPROTO15243 131 aa6.76□□□□□ -1.33
VRK3-210ENST00000596121 LINC00158P58513 81 aa6.76□□□□□ -1.33
VRK3-210ENST00000596121 LBHQ53QV2 105 aaPredicted RBP6.76□□□□□ -1.33
VRK3-210ENST00000596121 HIST3H2BBQ8N257 126 aa6.76□□□□□ -1.33
VRK3-210ENST00000596121 NDUFA12Q9UI09 145 aa6.76□□□□□ -1.33
VRK3-210ENST00000596121 KRTAP10-8P60410 259 aa6.75□□□□□ -1.33
VRK3-210ENST00000596121 LINC01545Q5VT33 79 aa6.75□□□□□ -1.33
VRK3-210ENST00000596121 SFTA2Q6UW10 78 aa6.75□□□□□ -1.33
VRK3-210ENST00000596121 J3QQQ9 107 aa6.74□□□□□ -1.33
VRK3-210ENST00000596121 C3orf79P0CE67 100 aa6.74□□□□□ -1.33
VRK3-210ENST00000596121 PLEKHB2Q96CS7 222 aa6.74□□□□□ -1.33
VRK3-210ENST00000596121 H0Y9J4 135 aa6.73□□□□□ -1.33
VRK3-210ENST00000596121 HERV-K104P63124 156 aa6.73□□□□□ -1.33
VRK3-210ENST00000596121 REG3GQ6UW15 175 aa6.73□□□□□ -1.33
VRK3-210ENST00000596121 PET117Q6UWS5 81 aa6.73□□□□□ -1.33
VRK3-210ENST00000596121 MIR7-3HGQ8N6C7 128 aa6.73□□□□□ -1.33
VRK3-210ENST00000596121 NKAPP1Q8N9T2 125 aa6.73□□□□□ -1.33
VRK3-210ENST00000596121 MYMXA0A1B0GTQ4 84 aa6.72□□□□□ -1.33
VRK3-210ENST00000596121 KRTAP1-4P0C5Y4 121 aa6.72□□□□□ -1.33
VRK3-210ENST00000596121 S100A2P29034 98 aa6.72□□□□□ -1.33
VRK3-210ENST00000596121 MEIG1Q5JSS6 88 aa6.72□□□□□ -1.33
VRK3-210ENST00000596121 HIST1H2BLQ99880 126 aa6.72□□□□□ -1.33
VRK3-210ENST00000596121 IGLV1-50A0A075B6I6 118 aa6.71□□□□□ -1.34
VRK3-210ENST00000596121 IGKV2-28A0A075B6P5 120 aa6.71□□□□□ -1.34
VRK3-210ENST00000596121 E9PLD3 99 aa6.71□□□□□ -1.34
VRK3-210ENST00000596121 ZNF861PO60384 105 aa6.71□□□□□ -1.34
VRK3-210ENST00000596121 BCE1O60756 84 aa6.71□□□□□ -1.34
VRK3-210ENST00000596121 IGKV2D-28P01615 120 aa6.71□□□□□ -1.34
VRK3-210ENST00000596121 HERVK_113P61574 105 aa6.71□□□□□ -1.34
VRK3-210ENST00000596121 DAND5Q8N907 189 aa6.71□□□□□ -1.34
VRK3-210ENST00000596121 DIRC1Q969H9 104 aa6.71□□□□□ -1.34
VRK3-210ENST00000596121 IGKV2D-26A0A0A0MRZ7 120 aa6.7□□□□□ -1.34
VRK3-210ENST00000596121 TMEM238C9JI98 176 aa6.7□□□□□ -1.34
VRK3-210ENST00000596121 LGALS3P17931 250 aaKnown RBP6.7□□□□□ -1.34
VRK3-210ENST00000596121 KRTDAPP60985 99 aa6.7□□□□□ -1.34
VRK3-210ENST00000596121 RPL24P83731 157 aaKnown RBP6.7□□□□□ -1.34
VRK3-210ENST00000596121 KRTAP13-1Q8IUC0 172 aa6.7□□□□□ -1.34
VRK3-210ENST00000596121 UBR4Q5T4S7 5183 aa6.69□□□□□ -1.34
VRK3-210ENST00000596121 EIF4EBP3O60516 100 aaPredicted RBP6.69□□□□□ -1.34
VRK3-210ENST00000596121 ADAMTSL4-AS1Q5T5F5 129 aa6.69□□□□□ -1.34
VRK3-210ENST00000596121 BOD1L2Q8IYS8 172 aa6.69□□□□□ -1.34
VRK3-210ENST00000596121 PRR26Q8N8Z3 221 aa6.69□□□□□ -1.34
VRK3-210ENST00000596121 A0A0J9YXY3 114 aa6.68□□□□□ -1.34
VRK3-210ENST00000596121 M0R378 163 aa6.68□□□□□ -1.34
VRK3-210ENST00000596121 SMIM6P0DI80 62 aa6.68□□□□□ -1.34
VRK3-210ENST00000596121 NMUP48645 174 aa6.68□□□□□ -1.34
VRK3-210ENST00000596121 TTTY13Q9BZ97 58 aa6.68□□□□□ -1.34
VRK3-210ENST00000596121 LOC107984156A0A0G2JMH3 177 aa6.67□□□□□ -1.34
VRK3-210ENST00000596121 LINC00587B1AMM8 73 aa6.67□□□□□ -1.34
VRK3-210ENST00000596121 AKR1D1P51857 326 aa6.67□□□□□ -1.34
VRK3-210ENST00000596121 JOSD1Q15040 202 aaPredicted RBP6.67□□□□□ -1.34
VRK3-210ENST00000596121 SOSTDC1Q6X4U4 206 aa6.67□□□□□ -1.34
VRK3-210ENST00000596121 ARL17AQ8IVW1 177 aa6.67□□□□□ -1.34
VRK3-210ENST00000596121 LINC00518Q8N0U6 118 aa6.67□□□□□ -1.34
VRK3-210ENST00000596121 TMEM126AQ9H061 195 aa6.67□□□□□ -1.34
VRK3-210ENST00000596121 NCR3O14931 201 aa6.66□□□□□ -1.34
VRK3-210ENST00000596121 ANKRD39Q53RE8 183 aa6.66□□□□□ -1.34
VRK3-210ENST00000596121 ATOH7Q8N100 152 aa6.66□□□□□ -1.34
VRK3-210ENST00000596121 LITAFQ99732 161 aa6.66□□□□□ -1.34
VRK3-210ENST00000596121 RPL28P46779 137 aaKnown RBP6.65□□□□□ -1.34
VRK3-210ENST00000596121 PRLHP81277 87 aa6.65□□□□□ -1.34
VRK3-210ENST00000596121 ANAPC11Q9NYG5 84 aa6.64□□□□□ -1.35
VRK3-210ENST00000596121 TRBV10-3A0A0K0K1G6 114 aa6.63□□□□□ -1.35
VRK3-210ENST00000596121 UBE2AP49459 152 aa6.63□□□□□ -1.35
VRK3-210ENST00000596121 NPC2P61916 151 aa6.63□□□□□ -1.35
VRK3-210ENST00000596121 PYY3Q5JQD4 70 aa6.63□□□□□ -1.35
VRK3-210ENST00000596121 FAM19A1Q7Z5A9 133 aa6.63□□□□□ -1.35
VRK3-210ENST00000596121 A0A087X002 238 aa6.62□□□□□ -1.35
VRK3-210ENST00000596121 ZNF815PA8K554 130 aa6.62□□□□□ -1.35
VRK3-210ENST00000596121 KCNQ1DNQ9H478 68 aa6.62□□□□□ -1.35
VRK3-210ENST00000596121 C20orf202A1L168 122 aa6.61□□□□□ -1.35
VRK3-210ENST00000596121 KRTAP4-16G5E9R7 235 aaPredicted RBP6.61□□□□□ -1.35
VRK3-210ENST00000596121 SPRR1AP35321 89 aa6.61□□□□□ -1.35
VRK3-210ENST00000596121 PCP2Q8IVA1 136 aa6.61□□□□□ -1.35
VRK3-210ENST00000596121 C12orf57Q99622 126 aa6.61□□□□□ -1.35
VRK3-210ENST00000596121 PRYO14603 147 aa6.6□□□□□ -1.35
VRK3-210ENST00000596121 TIMM17BO60830 172 aa6.6□□□□□ -1.35
VRK3-210ENST00000596121 LINC00308Q8TCZ7 52 aa6.6□□□□□ -1.35
VRK3-210ENST00000596121 LRP2P98164 4655 aa6.59□□□□□ -1.35
VRK3-210ENST00000596121 TRBV10-2A0A0K0K1G8 114 aa6.59□□□□□ -1.35
VRK3-210ENST00000596121 NDUFC2O95298 119 aa6.59□□□□□ -1.35
VRK3-210ENST00000596121 IGLV6-57P01721 117 aa6.58□□□□□ -1.36
VRK3-210ENST00000596121 DDTP30046 118 aa6.58□□□□□ -1.36
VRK3-210ENST00000596121 KRTAP13-2Q52LG2 175 aa6.58□□□□□ -1.36
VRK3-210ENST00000596121 LINC00337Q8N6G1 96 aa6.58□□□□□ -1.36
VRK3-210ENST00000596121 SPANXB1Q9NS25 103 aaPredicted RBP6.58□□□□□ -1.36
VRK3-210ENST00000596121 SCGB1D1O95968 90 aa6.57□□□□□ -1.36
VRK3-210ENST00000596121 MIEN1Q9BRT3 115 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms