RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 HERV-K104P63124 156 aa7.63□□□□□ -1.19
UPF1-203ENST00000594504 LINC01545Q5VT33 79 aa7.63□□□□□ -1.19
UPF1-203ENST00000594504 NDUFA12Q9UI09 145 aa7.63□□□□□ -1.19
UPF1-203ENST00000594504 RNF213Q63HN8 5207 aa7.62□□□□□ -1.19
UPF1-203ENST00000594504 C1orf137Q5JT78 98 aa7.62□□□□□ -1.19
UPF1-203ENST00000594504 MYMXA0A1B0GTQ4 84 aa7.61□□□□□ -1.19
UPF1-203ENST00000594504 J3QQQ9 107 aa7.61□□□□□ -1.19
UPF1-203ENST00000594504 TSPEAR-AS2P59090 65 aa7.61□□□□□ -1.19
UPF1-203ENST00000594504 KRTDAPP60985 99 aa7.61□□□□□ -1.19
UPF1-203ENST00000594504 KRTAP11-1Q8IUC1 163 aa7.61□□□□□ -1.19
UPF1-203ENST00000594504 SND1-IT1Q9HBX3 110 aa7.61□□□□□ -1.19
UPF1-203ENST00000594504 TP73-AS1Q9UF72 201 aa7.61□□□□□ -1.19
UPF1-203ENST00000594504 C22orf24Q9Y442 160 aa7.61□□□□□ -1.19
UPF1-203ENST00000594504 LINC00587B1AMM8 73 aa7.6□□□□□ -1.19
UPF1-203ENST00000594504 LGALS3P17931 250 aaKnown RBP7.6□□□□□ -1.19
UPF1-203ENST00000594504 NMUP48645 174 aa7.6□□□□□ -1.19
UPF1-203ENST00000594504 LINC00158P58513 81 aa7.6□□□□□ -1.19
UPF1-203ENST00000594504 UBE2BP63146 152 aa7.6□□□□□ -1.19
UPF1-203ENST00000594504 LBHQ53QV2 105 aaPredicted RBP7.6□□□□□ -1.19
UPF1-203ENST00000594504 MEIG1Q5JSS6 88 aa7.6□□□□□ -1.19
UPF1-203ENST00000594504 IGLV5-37A0A075B6J1 123 aa7.59□□□□□ -1.19
UPF1-203ENST00000594504 C20orf202A1L168 122 aa7.59□□□□□ -1.19
UPF1-203ENST00000594504 E9PLD3 99 aa7.59□□□□□ -1.19
UPF1-203ENST00000594504 S100A6P06703 90 aa7.59□□□□□ -1.19
UPF1-203ENST00000594504 MRPL55Q7Z7F7 128 aaKnown RBP7.59□□□□□ -1.19
UPF1-203ENST00000594504 HIST3H2BBQ8N257 126 aa7.59□□□□□ -1.19
UPF1-203ENST00000594504 A0A0U1RRA0 63 aa7.58□□□□□ -1.2
UPF1-203ENST00000594504 SMIM13P0DJ93 91 aa7.58□□□□□ -1.2
UPF1-203ENST00000594504 S100A2P29034 98 aa7.58□□□□□ -1.2
UPF1-203ENST00000594504 PRR26Q8N8Z3 221 aa7.58□□□□□ -1.2
UPF1-203ENST00000594504 NKAPP1Q8N9T2 125 aa7.58□□□□□ -1.2
UPF1-203ENST00000594504 IGLV7-43P04211 117 aa7.57□□□□□ -1.2
UPF1-203ENST00000594504 AKR1D1P51857 326 aa7.57□□□□□ -1.2
UPF1-203ENST00000594504 HIST1H2BLQ99880 126 aa7.57□□□□□ -1.2
UPF1-203ENST00000594504 VPREB1P12018 145 aa7.56□□□□□ -1.2
UPF1-203ENST00000594504 RPL24P83731 157 aaKnown RBP7.56□□□□□ -1.2
UPF1-203ENST00000594504 MIR7-3HGQ8N6C7 128 aa7.56□□□□□ -1.2
UPF1-203ENST00000594504 LINC00167Q96N53 147 aa7.55□□□□□ -1.2
UPF1-203ENST00000594504 LPAP08519 4548 aa7.53□□□□□ -1.2
UPF1-203ENST00000594504 GAGE10A6NGK3 116 aa7.53□□□□□ -1.2
UPF1-203ENST00000594504 SNRPEP62304 92 aaKnown RBP7.53□□□□□ -1.2
UPF1-203ENST00000594504 Q8NDZ9 215 aa7.53□□□□□ -1.2
UPF1-203ENST00000594504 RPL37AP8A6NKH3 93 aa7.52□□□□□ -1.21
UPF1-203ENST00000594504 H0Y9J4 135 aa7.52□□□□□ -1.21
UPF1-203ENST00000594504 DIRC1Q969H9 104 aa7.52□□□□□ -1.21
UPF1-203ENST00000594504 IGKV2D-26A0A0A0MRZ7 120 aa7.51□□□□□ -1.21
UPF1-203ENST00000594504 A0A0J9YXY3 114 aa7.51□□□□□ -1.21
UPF1-203ENST00000594504 C5orf52A6NGY3 159 aa7.51□□□□□ -1.21
UPF1-203ENST00000594504 BOD1L2Q8IYS8 172 aa7.51□□□□□ -1.21
UPF1-203ENST00000594504 ATOH7Q8N100 152 aa7.51□□□□□ -1.21
UPF1-203ENST00000594504 LOC107984156A0A0G2JMH3 177 aa7.5□□□□□ -1.21
UPF1-203ENST00000594504 ZNF815PA8K554 130 aa7.5□□□□□ -1.21
UPF1-203ENST00000594504 KRTAP1-4P0C5Y4 121 aa7.5□□□□□ -1.21
UPF1-203ENST00000594504 ARL17AQ8IVW1 177 aa7.5□□□□□ -1.21
UPF1-203ENST00000594504 DAND5Q8N907 189 aa7.5□□□□□ -1.21
UPF1-203ENST00000594504 IGLV1-50A0A075B6I6 118 aa7.49□□□□□ -1.21
UPF1-203ENST00000594504 IGKV2-28A0A075B6P5 120 aa7.49□□□□□ -1.21
UPF1-203ENST00000594504 M0R378 163 aa7.49□□□□□ -1.21
UPF1-203ENST00000594504 BCE1O60756 84 aa7.49□□□□□ -1.21
UPF1-203ENST00000594504 IGKV2D-28P01615 120 aa7.49□□□□□ -1.21
UPF1-203ENST00000594504 ANKRD39Q53RE8 183 aa7.49□□□□□ -1.21
UPF1-203ENST00000594504 MIEN1Q9BRT3 115 aa7.49□□□□□ -1.21
UPF1-203ENST00000594504 ZNF861PO60384 105 aa7.48□□□□□ -1.21
UPF1-203ENST00000594504 TIMM17BO60830 172 aa7.48□□□□□ -1.21
UPF1-203ENST00000594504 TTTY13Q9BZ97 58 aa7.48□□□□□ -1.21
UPF1-203ENST00000594504 ADAMTSL4-AS1Q5T5F5 129 aa7.47□□□□□ -1.21
UPF1-203ENST00000594504 LITAFQ99732 161 aa7.47□□□□□ -1.21
UPF1-203ENST00000594504 NCR3O14931 201 aa7.46□□□□□ -1.22
UPF1-203ENST00000594504 RPL28P46779 137 aaKnown RBP7.46□□□□□ -1.22
UPF1-203ENST00000594504 HSBP1L1C9JCN9 74 aa7.45□□□□□ -1.22
UPF1-203ENST00000594504 NDUFC2O95298 119 aa7.45□□□□□ -1.22
UPF1-203ENST00000594504 SCGB1D4Q6XE38 83 aa7.45□□□□□ -1.22
UPF1-203ENST00000594504 TMEM126AQ9H061 195 aa7.45□□□□□ -1.22
UPF1-203ENST00000594504 TRBV10-2A0A0K0K1G8 114 aa7.44□□□□□ -1.22
UPF1-203ENST00000594504 TMEM238C9JI98 176 aa7.44□□□□□ -1.22
UPF1-203ENST00000594504 UBE2AP49459 152 aa7.44□□□□□ -1.22
UPF1-203ENST00000594504 SOSTDC1Q6X4U4 206 aa7.44□□□□□ -1.22
UPF1-203ENST00000594504 SPANXB1Q9NS25 103 aaPredicted RBP7.44□□□□□ -1.22
UPF1-203ENST00000594504 PRYO14603 147 aa7.43□□□□□ -1.22
UPF1-203ENST00000594504 SCGB1D1O95968 90 aa7.43□□□□□ -1.22
UPF1-203ENST00000594504 NPC2P61916 151 aa7.43□□□□□ -1.22
UPF1-203ENST00000594504 PRR4Q16378 134 aa7.43□□□□□ -1.22
UPF1-203ENST00000594504 KRTAP13-1Q8IUC0 172 aa7.43□□□□□ -1.22
UPF1-203ENST00000594504 PCP2Q8IVA1 136 aa7.43□□□□□ -1.22
UPF1-203ENST00000594504 LINC00308Q8TCZ7 52 aa7.43□□□□□ -1.22
UPF1-203ENST00000594504 TRBV10-3A0A0K0K1G6 114 aa7.42□□□□□ -1.22
UPF1-203ENST00000594504 EIF4EBP3O60516 100 aaPredicted RBP7.42□□□□□ -1.22
UPF1-203ENST00000594504 KCNQ1DNQ9H478 68 aa7.42□□□□□ -1.22
UPF1-203ENST00000594504 S100A12P80511 92 aa7.41□□□□□ -1.22
UPF1-203ENST00000594504 FAM19A1Q7Z5A9 133 aa7.41□□□□□ -1.22
UPF1-203ENST00000594504 SPANXDQ9BXN6 97 aa7.41□□□□□ -1.22
UPF1-203ENST00000594504 SPANXCQ9NY87 97 aa7.41□□□□□ -1.22
UPF1-203ENST00000594504 TSPAN13O95857 204 aa7.4□□□□□ -1.22
UPF1-203ENST00000594504 DDTP30046 118 aa7.4□□□□□ -1.22
UPF1-203ENST00000594504 PRLHP81277 87 aa7.4□□□□□ -1.22
UPF1-203ENST00000594504 COPS9Q8WXC6 57 aa7.4□□□□□ -1.22
UPF1-203ENST00000594504 SPRR1AP35321 89 aa7.39□□□□□ -1.23
UPF1-203ENST00000594504 S100A7L2Q5SY68 101 aa7.39□□□□□ -1.23
UPF1-203ENST00000594504 Q6ZVH6 145 aa7.39□□□□□ -1.23
UPF1-203ENST00000594504 IGLV6-57P01721 117 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms