RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 PLEKHB2Q96CS7 222 aa8.91□□□□□ -0.98
VRK3-206ENST00000594090 DMBT1Q9UGM3 2413 aaPredicted RBP8.91□□□□□ -0.98
VRK3-206ENST00000594090 LINC00158P58513 81 aa8.9□□□□□ -0.98
VRK3-206ENST00000594090 NKAPP1Q8N9T2 125 aa8.9□□□□□ -0.98
VRK3-206ENST00000594090 A0A0U1RRA0 63 aa8.89□□□□□ -0.99
VRK3-206ENST00000594090 MYMXA0A1B0GTQ4 84 aa8.89□□□□□ -0.99
VRK3-206ENST00000594090 VPREB1P12018 145 aa8.89□□□□□ -0.99
VRK3-206ENST00000594090 MEIG1Q5JSS6 88 aa8.89□□□□□ -0.99
VRK3-206ENST00000594090 LINC01545Q5VT33 79 aa8.89□□□□□ -0.99
VRK3-206ENST00000594090 LINC00167Q96N53 147 aa8.89□□□□□ -0.99
VRK3-206ENST00000594090 J3QQQ9 107 aa8.88□□□□□ -0.99
VRK3-206ENST00000594090 SMIM13P0DJ93 91 aa8.88□□□□□ -0.99
VRK3-206ENST00000594090 REG3GQ6UW15 175 aa8.88□□□□□ -0.99
VRK3-206ENST00000594090 PET117Q6UWS5 81 aa8.88□□□□□ -0.99
VRK3-206ENST00000594090 GAGE10A6NGK3 116 aa8.88□□□□□ -0.99
VRK3-206ENST00000594090 C3orf79P0CE67 100 aa8.88□□□□□ -0.99
VRK3-206ENST00000594090 MT1HL1P0DM35 61 aa8.88□□□□□ -0.99
VRK3-206ENST00000594090 HERC1Q15751 4861 aa8.87□□□□□ -0.99
VRK3-206ENST00000594090 RPL37AP8A6NKH3 93 aa8.87□□□□□ -0.99
VRK3-206ENST00000594090 LINC00587B1AMM8 73 aa8.87□□□□□ -0.99
VRK3-206ENST00000594090 LGALS3P17931 250 aaKnown RBP8.87□□□□□ -0.99
VRK3-206ENST00000594090 RPL24P83731 157 aaKnown RBP8.87□□□□□ -0.99
VRK3-206ENST00000594090 Q8NDZ9 215 aa8.87□□□□□ -0.99
VRK3-206ENST00000594090 LINC01600Q96MT4 127 aa8.87□□□□□ -0.99
VRK3-206ENST00000594090 E9PLD3 99 aa8.86□□□□□ -0.99
VRK3-206ENST00000594090 NMUP48645 174 aa8.86□□□□□ -0.99
VRK3-206ENST00000594090 KRTDAPP60985 99 aa8.86□□□□□ -0.99
VRK3-206ENST00000594090 MIR7-3HGQ8N6C7 128 aa8.86□□□□□ -0.99
VRK3-206ENST00000594090 DIRC1Q969H9 104 aa8.86□□□□□ -0.99
VRK3-206ENST00000594090 H0Y9J4 135 aa8.84□□□□□ -0.99
VRK3-206ENST00000594090 IGKV2-28A0A075B6P5 120 aa8.83□□□□□ -1
VRK3-206ENST00000594090 BCE1O60756 84 aa8.83□□□□□ -1
VRK3-206ENST00000594090 IGKV2D-28P01615 120 aa8.83□□□□□ -1
VRK3-206ENST00000594090 ZNF861PO60384 105 aa8.82□□□□□ -1
VRK3-206ENST00000594090 IGLV1-50A0A075B6I6 118 aa8.81□□□□□ -1
VRK3-206ENST00000594090 BOD1L2Q8IYS8 172 aa8.81□□□□□ -1
VRK3-206ENST00000594090 C20orf202A1L168 122 aa8.8□□□□□ -1
VRK3-206ENST00000594090 HIST3H2BBQ8N257 126 aa8.8□□□□□ -1
VRK3-206ENST00000594090 DAND5Q8N907 189 aa8.8□□□□□ -1
VRK3-206ENST00000594090 A0A0J9YXY3 114 aa8.79□□□□□ -1
VRK3-206ENST00000594090 M0R378 163 aa8.79□□□□□ -1
VRK3-206ENST00000594090 RPL28P46779 137 aaKnown RBP8.79□□□□□ -1
VRK3-206ENST00000594090 IGKV2D-26A0A0A0MRZ7 120 aa8.78□□□□□ -1
VRK3-206ENST00000594090 NCR3O14931 201 aa8.78□□□□□ -1
VRK3-206ENST00000594090 KRTAP10-8P60410 259 aa8.78□□□□□ -1
VRK3-206ENST00000594090 HIST1H2BLQ99880 126 aa8.78□□□□□ -1
VRK3-206ENST00000594090 TMEM126AQ9H061 195 aa8.78□□□□□ -1
VRK3-206ENST00000594090 TNXBP22105 4242 aa8.78□□□□□ -1
VRK3-206ENST00000594090 LOC107984156A0A0G2JMH3 177 aa8.77□□□□□ -1.01
VRK3-206ENST00000594090 TMEM238C9JI98 176 aa8.77□□□□□ -1.01
VRK3-206ENST00000594090 S100A6P06703 90 aa8.77□□□□□ -1.01
VRK3-206ENST00000594090 KRTAP1-4P0C5Y4 121 aa8.77□□□□□ -1.01
VRK3-206ENST00000594090 S100A2P29034 98 aa8.77□□□□□ -1.01
VRK3-206ENST00000594090 KRTAP13-1Q8IUC0 172 aa8.77□□□□□ -1.01
VRK3-206ENST00000594090 ARL17AQ8IVW1 177 aa8.77□□□□□ -1.01
VRK3-206ENST00000594090 UBE2AP49459 152 aa8.76□□□□□ -1.01
VRK3-206ENST00000594090 ATOH7Q8N100 152 aa8.76□□□□□ -1.01
VRK3-206ENST00000594090 ZNF815PA8K554 130 aa8.75□□□□□ -1.01
VRK3-206ENST00000594090 MIEN1Q9BRT3 115 aa8.75□□□□□ -1.01
VRK3-206ENST00000594090 TTTY13Q9BZ97 58 aa8.75□□□□□ -1.01
VRK3-206ENST00000594090 AKR1D1P51857 326 aa8.74□□□□□ -1.01
VRK3-206ENST00000594090 ADAMTSL4-AS1Q5T5F5 129 aa8.74□□□□□ -1.01
VRK3-206ENST00000594090 PRLHP81277 87 aa8.73□□□□□ -1.01
VRK3-206ENST00000594090 ANKRD39Q53RE8 183 aa8.73□□□□□ -1.01
VRK3-206ENST00000594090 SOSTDC1Q6X4U4 206 aa8.73□□□□□ -1.01
VRK3-206ENST00000594090 FAM19A1Q7Z5A9 133 aa8.73□□□□□ -1.01
VRK3-206ENST00000594090 PRR26Q8N8Z3 221 aa8.73□□□□□ -1.01
VRK3-206ENST00000594090 LITAFQ99732 161 aa8.73□□□□□ -1.01
VRK3-206ENST00000594090 PRYO14603 147 aa8.72□□□□□ -1.01
VRK3-206ENST00000594090 TIMM17BO60830 172 aa8.72□□□□□ -1.01
VRK3-206ENST00000594090 NPC2P61916 151 aa8.72□□□□□ -1.01
VRK3-206ENST00000594090 TRBV10-2A0A0K0K1G8 114 aa8.71□□□□□ -1.01
VRK3-206ENST00000594090 EIF4EBP3O60516 100 aaPredicted RBP8.71□□□□□ -1.01
VRK3-206ENST00000594090 NDUFC2O95298 119 aa8.71□□□□□ -1.01
VRK3-206ENST00000594090 SNRPEP62304 92 aaKnown RBP8.71□□□□□ -1.01
VRK3-206ENST00000594090 SPANXB1Q9NS25 103 aaPredicted RBP8.71□□□□□ -1.01
VRK3-206ENST00000594090 TRBV10-3A0A0K0K1G6 114 aa8.71□□□□□ -1.02
VRK3-206ENST00000594090 KCNQ1DNQ9H478 68 aa8.71□□□□□ -1.02
VRK3-206ENST00000594090 C5orf52A6NGY3 159 aa8.69□□□□□ -1.02
VRK3-206ENST00000594090 SPRR1AP35321 89 aa8.69□□□□□ -1.02
VRK3-206ENST00000594090 DDTP30046 118 aa8.68□□□□□ -1.02
VRK3-206ENST00000594090 SCGB1D4Q6XE38 83 aa8.68□□□□□ -1.02
VRK3-206ENST00000594090 LINC00337Q8N6G1 96 aa8.68□□□□□ -1.02
VRK3-206ENST00000594090 LINC00308Q8TCZ7 52 aa8.68□□□□□ -1.02
VRK3-206ENST00000594090 RPL13AP40429 203 aaKnown RBP8.67□□□□□ -1.02
VRK3-206ENST00000594090 S100A12P80511 92 aa8.67□□□□□ -1.02
VRK3-206ENST00000594090 KRTAP4-16G5E9R7 235 aaPredicted RBP8.66□□□□□ -1.02
VRK3-206ENST00000594090 PCP2Q8IVA1 136 aa8.66□□□□□ -1.02
VRK3-206ENST00000594090 ETDCA0A1B0GVM5 59 aa8.65□□□□□ -1.02
VRK3-206ENST00000594090 IGLV6-57P01721 117 aa8.65□□□□□ -1.02
VRK3-206ENST00000594090 S100A7L2Q5SY68 101 aa8.65□□□□□ -1.02
VRK3-206ENST00000594090 HIGD2AQ9BW72 106 aa8.65□□□□□ -1.02
VRK3-206ENST00000594090 SPANXDQ9BXN6 97 aa8.65□□□□□ -1.02
VRK3-206ENST00000594090 SPANXCQ9NY87 97 aa8.65□□□□□ -1.02
VRK3-206ENST00000594090 A0A087X002 238 aa8.64□□□□□ -1.03
VRK3-206ENST00000594090 HSBP1L1C9JCN9 74 aa8.64□□□□□ -1.03
VRK3-206ENST00000594090 ANAPC11Q9NYG5 84 aa8.63□□□□□ -1.03
VRK3-206ENST00000594090 TRAV23DV6A0A075B6W5 121 aa8.62□□□□□ -1.03
VRK3-206ENST00000594090 CRYGAP11844 174 aa8.62□□□□□ -1.03
VRK3-206ENST00000594090 FAM229BQ4G0N7 80 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms