RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 IGKV2-28A0A075B6P5 120 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 LEPROTO15243 131 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST1H2BKO60814 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 IGKV2D-28P01615 120 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST1H2BJP06899 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 SMIM13P0DJ93 91 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 MT1HL1P0DM35 61 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST1H2BOP23527 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST1H2BBP33778 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST1H2BDP58876 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST1H2BCP62807 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 S100A12P80511 92 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST2H2BEQ16778 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST1H2BHQ93079 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST1H2BNQ99877 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 HIST1H2BMQ99879 126 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 PMCHL2Q9BQD1 86 aa6.63□□□□□ -1.35
CLIP3-203ENST00000586457 LINC00310P59036 64 aa6.62□□□□□ -1.35
CLIP3-203ENST00000586457 J3QQQ9 107 aa6.61□□□□□ -1.35
CLIP3-203ENST00000586457 BOD1L2Q8IYS8 172 aa6.61□□□□□ -1.35
CLIP3-203ENST00000586457 MIEN1Q9BRT3 115 aa6.61□□□□□ -1.35
CLIP3-203ENST00000586457 RPL13AP40429 203 aaKnown RBP6.6□□□□□ -1.35
CLIP3-203ENST00000586457 NMUP48645 174 aa6.6□□□□□ -1.35
CLIP3-203ENST00000586457 KRTAP10-8P60410 259 aa6.6□□□□□ -1.35
CLIP3-203ENST00000586457 MIR7-3HGQ8N6C7 128 aa6.6□□□□□ -1.35
CLIP3-203ENST00000586457 HERC1Q15751 4861 aa6.6□□□□□ -1.35
CLIP3-203ENST00000586457 IGLV1-50A0A075B6I6 118 aa6.59□□□□□ -1.35
CLIP3-203ENST00000586457 SYS1-DBNDD2H3BUS1 97 aa6.59□□□□□ -1.35
CLIP3-203ENST00000586457 M0R378 163 aa6.59□□□□□ -1.35
CLIP3-203ENST00000586457 VPREB1P12018 145 aa6.59□□□□□ -1.35
CLIP3-203ENST00000586457 FAM19A1Q7Z5A9 133 aa6.59□□□□□ -1.35
CLIP3-203ENST00000586457 PRR26Q8N8Z3 221 aa6.59□□□□□ -1.35
CLIP3-203ENST00000586457 PKHD1L1Q86WI1 4243 aa6.58□□□□□ -1.36
CLIP3-203ENST00000586457 S100A1P23297 94 aa6.58□□□□□ -1.36
CLIP3-203ENST00000586457 PET117Q6UWS5 81 aa6.58□□□□□ -1.36
CLIP3-203ENST00000586457 LRP1Q07954 4544 aaKnown RBP6.58□□□□□ -1.36
CLIP3-203ENST00000586457 C20orf202A1L168 122 aa6.57□□□□□ -1.36
CLIP3-203ENST00000586457 KRTDAPP60985 99 aa6.57□□□□□ -1.36
CLIP3-203ENST00000586457 TMEM126AQ9H061 195 aa6.57□□□□□ -1.36
CLIP3-203ENST00000586457 IGKV2D-26A0A0A0MRZ7 120 aa6.56□□□□□ -1.36
CLIP3-203ENST00000586457 TMEM238C9JI98 176 aa6.56□□□□□ -1.36
CLIP3-203ENST00000586457 NCR3O14931 201 aa6.56□□□□□ -1.36
CLIP3-203ENST00000586457 E9PLD3 99 aa6.55□□□□□ -1.36
CLIP3-203ENST00000586457 CRYGAP11844 174 aa6.55□□□□□ -1.36
CLIP3-203ENST00000586457 AKR1D1P51857 326 aa6.54□□□□□ -1.36
CLIP3-203ENST00000586457 TSPEAR-AS2P59090 65 aa6.54□□□□□ -1.36
CLIP3-203ENST00000586457 PRLHP81277 87 aa6.54□□□□□ -1.36
CLIP3-203ENST00000586457 S100A7L2Q5SY68 101 aa6.54□□□□□ -1.36
CLIP3-203ENST00000586457 DAND5Q8N907 189 aa6.54□□□□□ -1.36
CLIP3-203ENST00000586457 FAT3Q8TDW7 4589 aa6.54□□□□□ -1.36
CLIP3-203ENST00000586457 ETDCA0A1B0GVM5 59 aa6.53□□□□□ -1.36
CLIP3-203ENST00000586457 C3orf79P0CE67 100 aa6.53□□□□□ -1.36
CLIP3-203ENST00000586457 S100A2P29034 98 aa6.53□□□□□ -1.36
CLIP3-203ENST00000586457 LINC01545Q5VT33 79 aa6.53□□□□□ -1.36
CLIP3-203ENST00000586457 HIGD2AQ9BW72 106 aa6.53□□□□□ -1.36
CLIP3-203ENST00000586457 PRYO14603 147 aa6.52□□□□□ -1.37
CLIP3-203ENST00000586457 S100A6P06703 90 aa6.52□□□□□ -1.37
CLIP3-203ENST00000586457 COA6Q5JTJ3 125 aaKnown RBP6.52□□□□□ -1.37
CLIP3-203ENST00000586457 TYMSOSQ8TAI1 123 aa6.52□□□□□ -1.37
CLIP3-203ENST00000586457 A0A0J9YXY3 114 aa6.51□□□□□ -1.37
CLIP3-203ENST00000586457 ZNF815PA8K554 130 aa6.51□□□□□ -1.37
CLIP3-203ENST00000586457 KRTAP1-4P0C5Y4 121 aa6.51□□□□□ -1.37
CLIP3-203ENST00000586457 DDTP30046 118 aa6.51□□□□□ -1.37
CLIP3-203ENST00000586457 NPC2P61916 151 aa6.51□□□□□ -1.37
CLIP3-203ENST00000586457 Q8NDZ9 215 aa6.51□□□□□ -1.37
CLIP3-203ENST00000586457 CBY1Q9Y3M2 126 aa6.51□□□□□ -1.37
CLIP3-203ENST00000586457 TRBV10-2A0A0K0K1G8 114 aa6.5□□□□□ -1.37
CLIP3-203ENST00000586457 SCGB1D4Q6XE38 83 aa6.5□□□□□ -1.37
CLIP3-203ENST00000586457 SPANXB1Q9NS25 103 aaPredicted RBP6.5□□□□□ -1.37
CLIP3-203ENST00000586457 ZNF706Q9Y5V0 76 aaPredicted RBP6.5□□□□□ -1.37
CLIP3-203ENST00000586457 TRBV10-3A0A0K0K1G6 114 aa6.49□□□□□ -1.37
CLIP3-203ENST00000586457 NDUFC2O95298 119 aa6.49□□□□□ -1.37
CLIP3-203ENST00000586457 HINT1P49773 126 aaPredicted RBP6.49□□□□□ -1.37
CLIP3-203ENST00000586457 FAM229BQ4G0N7 80 aa6.49□□□□□ -1.37
CLIP3-203ENST00000586457 KCNQ1DNQ9H478 68 aa6.49□□□□□ -1.37
CLIP3-203ENST00000586457 LOC107984156A0A0G2JMH3 177 aa6.48□□□□□ -1.37
CLIP3-203ENST00000586457 KRTAP13-1Q8IUC0 172 aa6.48□□□□□ -1.37
CLIP3-203ENST00000586457 ARL17AQ8IVW1 177 aa6.48□□□□□ -1.37
CLIP3-203ENST00000586457 LINC00337Q8N6G1 96 aa6.48□□□□□ -1.37
CLIP3-203ENST00000586457 OR13C6PQ8NH95 151 aa6.48□□□□□ -1.37
CLIP3-203ENST00000586457 COPS9Q8WXC6 57 aa6.48□□□□□ -1.37
CLIP3-203ENST00000586457 ANAPC11Q9NYG5 84 aa6.48□□□□□ -1.37
CLIP3-203ENST00000586457 HSBP1L1C9JCN9 74 aa6.47□□□□□ -1.37
CLIP3-203ENST00000586457 TIMM17BO60830 172 aa6.47□□□□□ -1.37
CLIP3-203ENST00000586457 TSPAN13O95857 204 aa6.47□□□□□ -1.37
CLIP3-203ENST00000586457 ADAMTSL4-AS1Q5T5F5 129 aa6.47□□□□□ -1.37
CLIP3-203ENST00000586457 SNRPEP62304 92 aaKnown RBP6.46□□□□□ -1.38
CLIP3-203ENST00000586457 JOSD1Q15040 202 aaPredicted RBP6.46□□□□□ -1.38
CLIP3-203ENST00000586457 ATOH7Q8N100 152 aa6.46□□□□□ -1.38
CLIP3-203ENST00000586457 A0A087X002 238 aa6.45□□□□□ -1.38
CLIP3-203ENST00000586457 PRR4Q16378 134 aa6.45□□□□□ -1.38
CLIP3-203ENST00000586457 LINC00518Q8N0U6 118 aa6.45□□□□□ -1.38
CLIP3-203ENST00000586457 LINC00308Q8TCZ7 52 aa6.45□□□□□ -1.38
CLIP3-203ENST00000586457 SMCR5Q8TEV8 140 aa6.45□□□□□ -1.38
CLIP3-203ENST00000586457 SPANXCQ9NY87 97 aa6.45□□□□□ -1.38
CLIP3-203ENST00000586457 TRAV23DV6A0A075B6W5 121 aa6.44□□□□□ -1.38
CLIP3-203ENST00000586457 C4orf48Q5BLP8 95 aa6.44□□□□□ -1.38
CLIP3-203ENST00000586457 SPRR1AP35321 89 aa6.43□□□□□ -1.38
CLIP3-203ENST00000586457 B5MCH6 92 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms