RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 A0A087X002 238 aa12.81□□□□□ -0.36
SHMT1-210ENST00000583780 XAGE1AQ9HD64 81 aa12.81□□□□□ -0.36
SHMT1-210ENST00000583780 TMEM223A0PJW6 202 aa12.77□□□□□ -0.37
SHMT1-210ENST00000583780 MUC17Q685J3 4493 aa12.77□□□□□ -0.37
SHMT1-210ENST00000583780 C22orf24Q9Y442 160 aa12.76□□□□□ -0.37
SHMT1-210ENST00000583780 ATP6V1G1O75348 118 aa12.75□□□□□ -0.37
SHMT1-210ENST00000583780 S100A1P23297 94 aa12.75□□□□□ -0.37
SHMT1-210ENST00000583780 PFN2P35080 140 aa12.75□□□□□ -0.37
SHMT1-210ENST00000583780 ZNF625Q96I27 306 aaPredicted RBP12.75□□□□□ -0.37
SHMT1-210ENST00000583780 PMCHL2Q9BQD1 86 aa12.74□□□□□ -0.37
SHMT1-210ENST00000583780 MAP1LC3CQ9BXW4 147 aa12.73□□□□□ -0.37
SHMT1-210ENST00000583780 TYMSOSQ8TAI1 123 aa12.72□□□□□ -0.37
SHMT1-210ENST00000583780 ERG28Q9UKR5 140 aa12.72□□□□□ -0.37
SHMT1-210ENST00000583780 CRYGAP11844 174 aa12.71□□□□□ -0.37
SHMT1-210ENST00000583780 PLNP26678 52 aa12.71□□□□□ -0.37
SHMT1-210ENST00000583780 DPM2O94777 84 aa12.7□□□□□ -0.38
SHMT1-210ENST00000583780 SFTA2Q6UW10 78 aa12.7□□□□□ -0.38
SHMT1-210ENST00000583780 RETNLBQ9BQ08 111 aa12.69□□□□□ -0.38
SHMT1-210ENST00000583780 ANAPC11Q9NYG5 84 aa12.69□□□□□ -0.38
SHMT1-210ENST00000583780 IGKCP01834 107 aa12.68□□□□□ -0.38
SHMT1-210ENST00000583780 KRTAP13-2Q52LG2 175 aa12.68□□□□□ -0.38
SHMT1-210ENST00000583780 LBHQ53QV2 105 aaPredicted RBP12.67□□□□□ -0.38
SHMT1-210ENST00000583780 RPL28P46779 137 aaKnown RBP12.66□□□□□ -0.38
SHMT1-210ENST00000583780 COX17Q14061 63 aa12.66□□□□□ -0.38
SHMT1-210ENST00000583780 A0A0U1RRA0 63 aa12.65□□□□□ -0.38
SHMT1-210ENST00000583780 BCE1O60756 84 aa12.65□□□□□ -0.38
SHMT1-210ENST00000583780 LINC00158P58513 81 aa12.65□□□□□ -0.38
SHMT1-210ENST00000583780 HERVK_113P61574 105 aa12.65□□□□□ -0.38
SHMT1-210ENST00000583780 SYS1-DBNDD2H3BUS1 97 aa12.64□□□□□ -0.39
SHMT1-210ENST00000583780 MRPL55Q7Z7F7 128 aaKnown RBP12.64□□□□□ -0.39
SHMT1-210ENST00000583780 SND1-IT1Q9HBX3 110 aa12.64□□□□□ -0.39
SHMT1-210ENST00000583780 TP73-AS1Q9UF72 201 aa12.64□□□□□ -0.39
SHMT1-210ENST00000583780 NDUFA12Q9UI09 145 aa12.64□□□□□ -0.39
SHMT1-210ENST00000583780 LEPROTO15243 131 aa12.63□□□□□ -0.39
SHMT1-210ENST00000583780 TSPEAR-AS2P59090 65 aa12.63□□□□□ -0.39
SHMT1-210ENST00000583780 TPRXLQ17RH7 258 aa12.63□□□□□ -0.39
SHMT1-210ENST00000583780 MEIG1Q5JSS6 88 aa12.63□□□□□ -0.39
SHMT1-210ENST00000583780 COA6Q5JTJ3 125 aaKnown RBP12.63□□□□□ -0.39
SHMT1-210ENST00000583780 NKAPP1Q8N9T2 125 aa12.63□□□□□ -0.39
SHMT1-210ENST00000583780 PLEKHB2Q96CS7 222 aa12.62□□□□□ -0.39
SHMT1-210ENST00000583780 CDIP1Q9H305 208 aa12.62□□□□□ -0.39
SHMT1-210ENST00000583780 MYMXA0A1B0GTQ4 84 aa12.61□□□□□ -0.39
SHMT1-210ENST00000583780 GAGE10A6NGK3 116 aa12.61□□□□□ -0.39
SHMT1-210ENST00000583780 SMIM13P0DJ93 91 aa12.6□□□□□ -0.39
SHMT1-210ENST00000583780 HERV-K104P63124 156 aa12.6□□□□□ -0.39
SHMT1-210ENST00000583780 LINC00167Q96N53 147 aa12.6□□□□□ -0.39
SHMT1-210ENST00000583780 RPL37AP8A6NKH3 93 aa12.59□□□□□ -0.39
SHMT1-210ENST00000583780 J3QQQ9 107 aa12.59□□□□□ -0.39
SHMT1-210ENST00000583780 PET117Q6UWS5 81 aa12.59□□□□□ -0.39
SHMT1-210ENST00000583780 KRTAP13-1Q8IUC0 172 aa12.59□□□□□ -0.39
SHMT1-210ENST00000583780 IGLV5-37A0A075B6J1 123 aa12.58□□□□□ -0.4
SHMT1-210ENST00000583780 C3orf79P0CE67 100 aa12.58□□□□□ -0.4
SHMT1-210ENST00000583780 LGALS3P17931 250 aaKnown RBP12.58□□□□□ -0.4
SHMT1-210ENST00000583780 KRTDAPP60985 99 aa12.58□□□□□ -0.4
SHMT1-210ENST00000583780 IGLV7-46A0A075B6I9 117 aa12.57□□□□□ -0.4
SHMT1-210ENST00000583780 LINC01545Q5VT33 79 aa12.57□□□□□ -0.4
SHMT1-210ENST00000583780 LINC00304Q8N9R0 145 aa12.57□□□□□ -0.4
SHMT1-210ENST00000583780 VPREB1P12018 145 aa12.56□□□□□ -0.4
SHMT1-210ENST00000583780 RPL24P83731 157 aaKnown RBP12.56□□□□□ -0.4
SHMT1-210ENST00000583780 FAM229BQ4G0N7 80 aa12.55□□□□□ -0.4
SHMT1-210ENST00000583780 MIR7-3HGQ8N6C7 128 aa12.55□□□□□ -0.4
SHMT1-210ENST00000583780 LINC00587B1AMM8 73 aa12.54□□□□□ -0.4
SHMT1-210ENST00000583780 Q8NDZ9 215 aa12.54□□□□□ -0.4
SHMT1-210ENST00000583780 IGKV2-28A0A075B6P5 120 aa12.53□□□□□ -0.4
SHMT1-210ENST00000583780 IGKV2D-28P01615 120 aa12.53□□□□□ -0.4
SHMT1-210ENST00000583780 NMUP48645 174 aa12.53□□□□□ -0.4
SHMT1-210ENST00000583780 E9PLD3 99 aa12.52□□□□□ -0.41
SHMT1-210ENST00000583780 LCE2DQ5TA82 110 aaPredicted RBP12.51□□□□□ -0.41
SHMT1-210ENST00000583780 C20orf202A1L168 122 aa12.5□□□□□ -0.41
SHMT1-210ENST00000583780 BOD1L2Q8IYS8 172 aa12.5□□□□□ -0.41
SHMT1-210ENST00000583780 DAND5Q8N907 189 aa12.5□□□□□ -0.41
SHMT1-210ENST00000583780 CTAG1AP78358 180 aa12.49□□□□□ -0.41
SHMT1-210ENST00000583780 PPDPFQ9H3Y8 114 aa12.49□□□□□ -0.41
SHMT1-210ENST00000583780 S100A6P06703 90 aa12.47□□□□□ -0.41
SHMT1-210ENST00000583780 S100A2P29034 98 aa12.47□□□□□ -0.41
SHMT1-210ENST00000583780 UBE2AP49459 152 aa12.47□□□□□ -0.41
SHMT1-210ENST00000583780 NCR3O14931 201 aa12.46□□□□□ -0.41
SHMT1-210ENST00000583780 HIST3H2BBQ8N257 126 aa12.46□□□□□ -0.41
SHMT1-210ENST00000583780 IGKV2D-26A0A0A0MRZ7 120 aa12.45□□□□□ -0.42
SHMT1-210ENST00000583780 A0A0J9YXY3 114 aa12.45□□□□□ -0.42
SHMT1-210ENST00000583780 ATOH7Q8N100 152 aa12.44□□□□□ -0.42
SHMT1-210ENST00000583780 TMEM238C9JI98 176 aa12.43□□□□□ -0.42
SHMT1-210ENST00000583780 M0R378 163 aa12.43□□□□□ -0.42
SHMT1-210ENST00000583780 HIST1H2BLQ99880 126 aa12.43□□□□□ -0.42
SHMT1-210ENST00000583780 MIEN1Q9BRT3 115 aa12.42□□□□□ -0.42
SHMT1-210ENST00000583780 KRTAP4-1Q9BYQ7 146 aa12.42□□□□□ -0.42
SHMT1-210ENST00000583780 ZNF815PA8K554 130 aa12.41□□□□□ -0.42
SHMT1-210ENST00000583780 NPC2P61916 151 aa12.41□□□□□ -0.42
SHMT1-210ENST00000583780 TTTY13Q9BZ97 58 aa12.41□□□□□ -0.42
SHMT1-210ENST00000583780 TMEM126AQ9H061 195 aa12.41□□□□□ -0.42
SHMT1-210ENST00000583780 CRCT1Q9UGL9 99 aa12.41□□□□□ -0.42
SHMT1-210ENST00000583780 FSIP2Q5CZC0 6907 aa12.41□□□□□ -0.42
SHMT1-210ENST00000583780 FAM19A1Q7Z5A9 133 aa12.4□□□□□ -0.42
SHMT1-210ENST00000583780 C3orf22Q8N5N4 141 aa12.4□□□□□ -0.42
SHMT1-210ENST00000583780 PRLHP81277 87 aa12.39□□□□□ -0.43
SHMT1-210ENST00000583780 SNRPEP62304 92 aaKnown RBP12.38□□□□□ -0.43
SHMT1-210ENST00000583780 ANKRD39Q53RE8 183 aa12.38□□□□□ -0.43
SHMT1-210ENST00000583780 ADAMTSL4-AS1Q5T5F5 129 aa12.38□□□□□ -0.43
SHMT1-210ENST00000583780 LOC107984156A0A0G2JMH3 177 aa12.37□□□□□ -0.43
SHMT1-210ENST00000583780 LINC01547P58512 204 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms