RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 SCGB1D4Q6XE38 83 aa10.79□□□□□ -0.68
NUP88-210ENST00000574867 PAM16Q9Y3D7 125 aa10.79□□□□□ -0.68
NUP88-210ENST00000574867 A0A1W2PNN7 141 aa10.78□□□□□ -0.68
NUP88-210ENST00000574867 SPATA45Q537H7 98 aa10.78□□□□□ -0.68
NUP88-210ENST00000574867 FAM168BA1KXE4 195 aa10.77□□□□□ -0.69
NUP88-210ENST00000574867 PLA2G2DQ9UNK4 145 aa10.77□□□□□ -0.69
NUP88-210ENST00000574867 FAM19A5Q7Z5A7 132 aaPredicted RBP10.77□□□□□ -0.69
NUP88-210ENST00000574867 KIAA1109Q2LD37 5005 aa10.75□□□□□ -0.69
NUP88-210ENST00000574867 TMEM238C9JI98 176 aa10.75□□□□□ -0.69
NUP88-210ENST00000574867 LITAFQ99732 161 aa10.75□□□□□ -0.69
NUP88-210ENST00000574867 COX8AP10176 69 aa10.75□□□□□ -0.69
NUP88-210ENST00000574867 DAND5Q8N907 189 aa10.75□□□□□ -0.69
NUP88-210ENST00000574867 SERTAD4-AS1Q5TG53 156 aa10.74□□□□□ -0.69
NUP88-210ENST00000574867 BOD1L2Q8IYS8 172 aa10.74□□□□□ -0.69
NUP88-210ENST00000574867 MIEN1Q9BRT3 115 aa10.74□□□□□ -0.69
NUP88-210ENST00000574867 RYR1P21817 5038 aa10.74□□□□□ -0.69
NUP88-210ENST00000574867 M0QXV9 152 aa10.73□□□□□ -0.69
NUP88-210ENST00000574867 ADAMTSL4-AS1Q5T5F5 129 aa10.73□□□□□ -0.69
NUP88-210ENST00000574867 KRTAP7-1Q8IUC3 87 aa10.73□□□□□ -0.69
NUP88-210ENST00000574867 LOC107984156A0A0G2JMH3 177 aa10.73□□□□□ -0.69
NUP88-210ENST00000574867 DLEU1O43261 78 aa10.73□□□□□ -0.69
NUP88-210ENST00000574867 RPL24P83731 157 aaKnown RBP10.73□□□□□ -0.69
NUP88-210ENST00000574867 ARL17AQ8IVW1 177 aa10.73□□□□□ -0.69
NUP88-210ENST00000574867 IGLV5-37A0A075B6J1 123 aa10.72□□□□□ -0.69
NUP88-210ENST00000574867 C7orf33Q8WU49 177 aa10.72□□□□□ -0.69
NUP88-210ENST00000574867 TP73-AS1Q9UF72 201 aa10.72□□□□□ -0.69
NUP88-210ENST00000574867 NKAPP1Q8N9T2 125 aa10.71□□□□□ -0.69
NUP88-210ENST00000574867 SPANXDQ9BXN6 97 aa10.71□□□□□ -0.69
NUP88-210ENST00000574867 SPANXCQ9NY87 97 aa10.71□□□□□ -0.69
NUP88-210ENST00000574867 VPREB1P12018 145 aa10.7□□□□□ -0.7
NUP88-210ENST00000574867 Q6ZVH6 145 aa10.7□□□□□ -0.7
NUP88-210ENST00000574867 LINC00528Q8N1L1 170 aa10.7□□□□□ -0.7
NUP88-210ENST00000574867 C22orf24Q9Y442 160 aa10.7□□□□□ -0.7
NUP88-210ENST00000574867 HSPG2P98160 4391 aa10.7□□□□□ -0.7
NUP88-210ENST00000574867 SMR3BP02814 79 aaPredicted RBP10.7□□□□□ -0.7
NUP88-210ENST00000574867 PHF5AQ7RTV0 110 aaKnown RBP10.69□□□□□ -0.7
NUP88-210ENST00000574867 COPS9Q8WXC6 57 aa10.69□□□□□ -0.7
NUP88-210ENST00000574867 SLC25A34Q6PIV7 304 aa10.69□□□□□ -0.7
NUP88-210ENST00000574867 MRPL55Q7Z7F7 128 aaKnown RBP10.69□□□□□ -0.7
NUP88-210ENST00000574867 LINC00308Q8TCZ7 52 aa10.69□□□□□ -0.7
NUP88-210ENST00000574867 NPC2P61916 151 aa10.67□□□□□ -0.7
NUP88-210ENST00000574867 Q8N1X5 172 aa10.67□□□□□ -0.7
NUP88-210ENST00000574867 Q8NDZ9 215 aa10.67□□□□□ -0.7
NUP88-210ENST00000574867 PPDPFQ9H3Y8 114 aa10.67□□□□□ -0.7
NUP88-210ENST00000574867 SPANXB1Q9NS25 103 aaPredicted RBP10.67□□□□□ -0.7
NUP88-210ENST00000574867 FAM229AH3BQW9 127 aa10.67□□□□□ -0.7
NUP88-210ENST00000574867 IFITM1P13164 125 aa10.67□□□□□ -0.7
NUP88-210ENST00000574867 SOSTDC1Q6X4U4 206 aa10.67□□□□□ -0.7
NUP88-210ENST00000574867 NDUFC2O95298 119 aa10.66□□□□□ -0.7
NUP88-210ENST00000574867 UBE2BP63146 152 aa10.65□□□□□ -0.7
NUP88-210ENST00000574867 EIF4EBP3O60516 100 aaPredicted RBP10.64□□□□□ -0.71
NUP88-210ENST00000574867 SRSF9Q13242 221 aaKnown RBP eCLIP10.64□□□□□ -0.71
NUP88-210ENST00000574867 RPL37AP61513 92 aaKnown RBP10.64□□□□□ -0.71
NUP88-210ENST00000574867 Q5VSD8 79 aa10.64□□□□□ -0.71
NUP88-210ENST00000574867 HIGD1BQ9P298 99 aa10.64□□□□□ -0.71
NUP88-210ENST00000574867 M0R378 163 aa10.63□□□□□ -0.71
NUP88-210ENST00000574867 PLA2G1BP04054 148 aaKnown RBP10.63□□□□□ -0.71
NUP88-210ENST00000574867 LINC00167Q96N53 147 aa10.63□□□□□ -0.71
NUP88-210ENST00000574867 TRBV10-2A0A0K0K1G8 114 aa10.62□□□□□ -0.71
NUP88-210ENST00000574867 M0R143 59 aa10.62□□□□□ -0.71
NUP88-210ENST00000574867 SNHG12Q9BXW3 62 aa10.62□□□□□ -0.71
NUP88-210ENST00000574867 GAGE10A6NGK3 116 aa10.62□□□□□ -0.71
NUP88-210ENST00000574867 NCR3O14931 201 aa10.62□□□□□ -0.71
NUP88-210ENST00000574867 PRR3P79522 188 aaKnown RBP10.61□□□□□ -0.71
NUP88-210ENST00000574867 C2orf91Q6ZV80 131 aa10.6□□□□□ -0.71
NUP88-210ENST00000574867 MUSTN1Q8IVN3 82 aa10.6□□□□□ -0.71
NUP88-210ENST00000574867 UQCR10Q9UDW1 63 aa10.6□□□□□ -0.71
NUP88-210ENST00000574867 HIST1H4GQ99525 98 aa10.59□□□□□ -0.71
NUP88-210ENST00000574867 PSORS1C2Q9UIG4 136 aa10.59□□□□□ -0.71
NUP88-210ENST00000574867 HERC2O95714 4834 aa10.59□□□□□ -0.71
NUP88-210ENST00000574867 RPL37AP8A6NKH3 93 aa10.59□□□□□ -0.71
NUP88-210ENST00000574867 IGLV1-50A0A075B6I6 118 aa10.58□□□□□ -0.72
NUP88-210ENST00000574867 KRTAP11-1Q8IUC1 163 aa10.58□□□□□ -0.72
NUP88-210ENST00000574867 IGKV2-28A0A075B6P5 120 aa10.57□□□□□ -0.72
NUP88-210ENST00000574867 IGKV2D-28P01615 120 aa10.57□□□□□ -0.72
NUP88-210ENST00000574867 KRTAP17-1Q9BYP8 105 aa10.57□□□□□ -0.72
NUP88-210ENST00000574867 KRTAP10-4P60372 401 aaPredicted RBP10.56□□□□□ -0.72
NUP88-210ENST00000574867 S100A7L2Q5SY68 101 aa10.56□□□□□ -0.72
NUP88-210ENST00000574867 FAT1Q14517 4588 aa10.56□□□□□ -0.72
NUP88-210ENST00000574867 TAL2Q16559 108 aa10.55□□□□□ -0.72
NUP88-210ENST00000574867 C1orf137Q5JT78 98 aa10.55□□□□□ -0.72
NUP88-210ENST00000574867 TRBV10-3A0A0K0K1G6 114 aa10.54□□□□□ -0.72
NUP88-210ENST00000574867 PRYO14603 147 aa10.53□□□□□ -0.72
NUP88-210ENST00000574867 IGLV6-57P01721 117 aa10.53□□□□□ -0.72
NUP88-210ENST00000574867 KCNQ1DNQ9H478 68 aa10.53□□□□□ -0.72
NUP88-210ENST00000574867 CBY1Q9Y3M2 126 aa10.53□□□□□ -0.72
NUP88-210ENST00000574867 A4D1N5 150 aa10.52□□□□□ -0.73
NUP88-210ENST00000574867 REG3GQ6UW15 175 aa10.52□□□□□ -0.73
NUP88-210ENST00000574867 TMEM126AQ9H061 195 aa10.52□□□□□ -0.73
NUP88-210ENST00000574867 VPS13BQ7Z7G8 4022 aa10.52□□□□□ -0.73
NUP88-210ENST00000574867 LINC00337Q8N6G1 96 aa10.51□□□□□ -0.73
NUP88-210ENST00000574867 BCE1O60756 84 aa10.51□□□□□ -0.73
NUP88-210ENST00000574867 HNRNPA3P51991 378 aaKnown RBP10.51□□□□□ -0.73
NUP88-210ENST00000574867 HSD52Q0P140 79 aa10.5□□□□□ -0.73
NUP88-210ENST00000574867 OR13C6PQ8NH95 151 aa10.5□□□□□ -0.73
NUP88-210ENST00000574867 IGLV7-43P04211 117 aa10.49□□□□□ -0.73
NUP88-210ENST00000574867 TRAV13-2A0A0B4J235 113 aa10.49□□□□□ -0.73
NUP88-210ENST00000574867 CEND1Q8N111 149 aa10.49□□□□□ -0.73
NUP88-210ENST00000574867 TRAV23DV6A0A075B6W5 121 aa10.48□□□□□ -0.73
NUP88-210ENST00000574867 TMEM238LA0A1B0GVL6 79 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms