RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 NUPR2A6NF83 97 aa2.04□□□□□ -2.08
NUP88-208ENST00000574087 MRPL33O75394 65 aaKnown RBP2.04□□□□□ -2.08
NUP88-208ENST00000574087 CR1P17927 2039 aa2.04□□□□□ -2.08
NUP88-208ENST00000574087 INTS1Q8N201 2190 aaKnown RBP2.04□□□□□ -2.08
NUP88-208ENST00000574087 TTTY12Q9BZ98 90 aa2.04□□□□□ -2.08
NUP88-208ENST00000574087 COL4A5P29400 1685 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 IGKV3-7A0A075B6H7 116 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 NDUFA1O15239 70 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 POLR2KP53803 58 aaKnown RBP2.03□□□□□ -2.08
NUP88-208ENST00000574087 WT1-ASQ06250 92 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 SPAG11BQ08648 103 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 DEFB110Q30KQ9 67 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 SPAG11AQ6PDA7 123 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 LINC00308Q8TCZ7 52 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 R4GN34 69 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 ARHGAP32A7KAX9 2087 aa2.03□□□□□ -2.08
NUP88-208ENST00000574087 PRRC2BQ5JSZ5 2229 aaKnown RBP2.02□□□□□ -2.09
NUP88-208ENST00000574087 IGKV2-40A0A087WW87 121 aaPredicted RBP2.02□□□□□ -2.09
NUP88-208ENST00000574087 NDUFB1O75438 58 aa2.02□□□□□ -2.09
NUP88-208ENST00000574087 IGKV2D-40P01614 121 aaPredicted RBP2.02□□□□□ -2.09
NUP88-208ENST00000574087 MGPP08493 103 aa2.02□□□□□ -2.09
NUP88-208ENST00000574087 NREPQ16612 68 aa2.02□□□□□ -2.09
NUP88-208ENST00000574087 ESPL1Q14674 2120 aa2.02□□□□□ -2.09
NUP88-208ENST00000574087 I3L2K1 104 aa2.01□□□□□ -2.09
NUP88-208ENST00000574087 CCL18P55774 89 aa2.01□□□□□ -2.09
NUP88-208ENST00000574087 HAMPP81172 84 aa2.01□□□□□ -2.09
NUP88-208ENST00000574087 FDCSPQ8NFU4 85 aa2.01□□□□□ -2.09
NUP88-208ENST00000574087 RPL39LQ96EH5 51 aaKnown RBP2.01□□□□□ -2.09
NUP88-208ENST00000574087 ZNF625Q96I27 306 aaPredicted RBP2.01□□□□□ -2.09
NUP88-208ENST00000574087 CCL26Q9Y258 94 aa2.01□□□□□ -2.09
NUP88-208ENST00000574087 MUC19Q7Z5P9 8384 aa2□□□□□ -2.09
NUP88-208ENST00000574087 LOC110117498A0A087WWA1 95 aa2□□□□□ -2.09
NUP88-208ENST00000574087 NCR3O14931 201 aa2□□□□□ -2.09
NUP88-208ENST00000574087 CTSGP08311 255 aa2□□□□□ -2.09
NUP88-208ENST00000574087 CCL3L1P16619 93 aa2□□□□□ -2.09
NUP88-208ENST00000574087 RPL39P62891 51 aaKnown RBP2□□□□□ -2.09
NUP88-208ENST00000574087 WFDC9Q8NEX5 89 aa2□□□□□ -2.09
NUP88-208ENST00000574087 SPRR4Q96PI1 79 aa2□□□□□ -2.09
NUP88-208ENST00000574087 DNAJC13O75165 2243 aa2□□□□□ -2.09
NUP88-208ENST00000574087 SMIM11BQ8TCY0 68 aa1.99□□□□□ -2.09
NUP88-208ENST00000574087 COX7B2Q8TF08 81 aa1.99□□□□□ -2.09
NUP88-208ENST00000574087 PRO2289Q9P1D8 64 aa1.99□□□□□ -2.09
NUP88-208ENST00000574087 GOLGA4Q13439 2230 aaKnown RBP1.99□□□□□ -2.09
NUP88-208ENST00000574087 ZFHX3Q15911 3703 aa1.99□□□□□ -2.09
NUP88-208ENST00000574087 IGKV3OR2-268A0A0C4DH90 116 aa1.98□□□□□ -2.09
NUP88-208ENST00000574087 SPINK7P58062 85 aa1.98□□□□□ -2.09
NUP88-208ENST00000574087 SPATA8Q6RVD6 105 aa1.98□□□□□ -2.09
NUP88-208ENST00000574087 PATE1Q8WXA2 126 aa1.98□□□□□ -2.09
NUP88-208ENST00000574087 LEAP2Q969E1 77 aa1.98□□□□□ -2.09
NUP88-208ENST00000574087 LINC00208Q96KT6 92 aa1.98□□□□□ -2.09
NUP88-208ENST00000574087 PSORS1C2Q9UIG4 136 aa1.98□□□□□ -2.09
NUP88-208ENST00000574087 CACNA1CQ13936 2221 aa1.98□□□□□ -2.09
NUP88-208ENST00000574087 IGKV2-29A2NJV5 120 aaPredicted RBP1.97□□□□□ -2.09
NUP88-208ENST00000574087 K7EIM0 57 aa1.97□□□□□ -2.09
NUP88-208ENST00000574087 DEFB114Q30KQ6 69 aa1.97□□□□□ -2.09
NUP88-208ENST00000574087 C10orf55Q5SWW7 151 aa1.97□□□□□ -2.09
NUP88-208ENST00000574087 DEFB132Q7Z7B7 95 aa1.97□□□□□ -2.09
NUP88-208ENST00000574087 HIGD2AQ9BW72 106 aa1.97□□□□□ -2.09
NUP88-208ENST00000574087 ARFGEF3Q5TH69 2177 aa1.97□□□□□ -2.09
NUP88-208ENST00000574087 CUL9Q8IWT3 2517 aa1.96□□□□□ -2.09
NUP88-208ENST00000574087 SPTY2D1-AS1A0A0U1RR47 76 aa1.96□□□□□ -2.1
NUP88-208ENST00000574087 M0QY20 66 aa1.96□□□□□ -2.1
NUP88-208ENST00000574087 UQCR11O14957 56 aa1.96□□□□□ -2.1
NUP88-208ENST00000574087 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.96□□□□□ -2.1
NUP88-208ENST00000574087 C4orf3Q8WVX3 66 aa1.96□□□□□ -2.1
NUP88-208ENST00000574087 A0A087WTM6 91 aa1.95□□□□□ -2.1
NUP88-208ENST00000574087 TRBV6-4A0A1B0GX49 114 aa1.95□□□□□ -2.1
NUP88-208ENST00000574087 H0Y9P7 68 aa1.95□□□□□ -2.1
NUP88-208ENST00000574087 KRTAP5-8O75690 187 aa1.95□□□□□ -2.1
NUP88-208ENST00000574087 RNASE3P12724 160 aaKnown RBP1.95□□□□□ -2.1
NUP88-208ENST00000574087 LINC00158P58513 81 aa1.95□□□□□ -2.1
NUP88-208ENST00000574087 Q6ZTI0 123 aa1.95□□□□□ -2.1
NUP88-208ENST00000574087 GAFA1Q96PS6 74 aa1.95□□□□□ -2.1
NUP88-208ENST00000574087 CDKN2A-AS1Q9UH64 79 aa1.95□□□□□ -2.1
NUP88-208ENST00000574087 ABCA4P78363 2273 aa1.94□□□□□ -2.1
NUP88-208ENST00000574087 DOCK10Q96BY6 2186 aa1.94□□□□□ -2.1
NUP88-208ENST00000574087 ETDCA0A1B0GVM5 59 aa1.94□□□□□ -2.1
NUP88-208ENST00000574087 KLK9Q9UKQ9 250 aa1.94□□□□□ -2.1
NUP88-208ENST00000574087 SPAG17Q6Q759 2223 aa1.94□□□□□ -2.1
NUP88-208ENST00000574087 TRIOBPQ9H2D6 2365 aa1.93□□□□□ -2.1
NUP88-208ENST00000574087 NBDYA0A0U1RRE5 68 aa1.93□□□□□ -2.1
NUP88-208ENST00000574087 APELAP0DMC3 54 aa1.93□□□□□ -2.1
NUP88-208ENST00000574087 COX7BP24311 80 aa1.93□□□□□ -2.1
NUP88-208ENST00000574087 KLK9Q2XQG4 91 aa1.93□□□□□ -2.1
NUP88-208ENST00000574087 WFDC10AQ9H1F0 79 aa1.93□□□□□ -2.1
NUP88-208ENST00000574087 LINC00472Q9H8W2 130 aa1.93□□□□□ -2.1
NUP88-208ENST00000574087 RP1P56715 2156 aa1.93□□□□□ -2.1
NUP88-208ENST00000574087 FBN1P35555 2871 aaKnown RBP1.92□□□□□ -2.1
NUP88-208ENST00000574087 TRGV2A0A075B6R0 118 aa1.92□□□□□ -2.1
NUP88-208ENST00000574087 LINC00959A0A1B0GUT2 108 aa1.92□□□□□ -2.1
NUP88-208ENST00000574087 COX6A2Q02221 97 aa1.92□□□□□ -2.1
NUP88-208ENST00000574087 LINC00575Q6W349 94 aa1.92□□□□□ -2.1
NUP88-208ENST00000574087 SDK1Q7Z5N4 2213 aa1.91□□□□□ -2.1
NUP88-208ENST00000574087 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.91□□□□□ -2.1
NUP88-208ENST00000574087 TRGV4A0A0C4DH28 118 aa1.91□□□□□ -2.1
NUP88-208ENST00000574087 NDUFA4O00483 81 aa1.91□□□□□ -2.1
NUP88-208ENST00000574087 COX17Q14061 63 aa1.91□□□□□ -2.1
NUP88-208ENST00000574087 DEFB108BQ8NET1 73 aa1.91□□□□□ -2.1
NUP88-208ENST00000574087 UNC13CQ8NB66 2214 aa1.91□□□□□ -2.1
NUP88-208ENST00000574087 TPRXLQ17RH7 258 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms