RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 C9orf66Q5T8R8 295 aa10.59□□□□□ -0.71
NUP88-207ENST00000573584 LYPD5Q6UWN5 251 aa10.59□□□□□ -0.71
NUP88-207ENST00000573584 UPK3BQ9BT76 320 aa10.59□□□□□ -0.71
NUP88-207ENST00000573584 APOC4P55056 127 aa10.58□□□□□ -0.72
NUP88-207ENST00000573584 FAM19A1Q7Z5A9 133 aa10.58□□□□□ -0.72
NUP88-207ENST00000573584 A0A0J9YWU9 116 aa10.58□□□□□ -0.72
NUP88-207ENST00000573584 IGHV4-30-4P0DP06 118 aa10.58□□□□□ -0.72
NUP88-207ENST00000573584 MUC7Q8TAX7 377 aa10.58□□□□□ -0.72
NUP88-207ENST00000573584 LAMTOR3Q9UHA4 124 aa10.58□□□□□ -0.72
NUP88-207ENST00000573584 KLK12Q9UKR0 248 aa10.57□□□□□ -0.72
NUP88-207ENST00000573584 ZNF561-AS1K7EIQ3 104 aa10.57□□□□□ -0.72
NUP88-207ENST00000573584 LELP1Q5T871 98 aa10.57□□□□□ -0.72
NUP88-207ENST00000573584 TRAV23DV6A0A075B6W5 121 aa10.57□□□□□ -0.72
NUP88-207ENST00000573584 J3KT08 172 aa10.57□□□□□ -0.72
NUP88-207ENST00000573584 IGLV6-57P01721 117 aa10.57□□□□□ -0.72
NUP88-207ENST00000573584 Q6ZQT0 140 aa10.56□□□□□ -0.72
NUP88-207ENST00000573584 Q8NAQ8 132 aa10.55□□□□□ -0.72
NUP88-207ENST00000573584 GHRHP01286 108 aa10.54□□□□□ -0.72
NUP88-207ENST00000573584 PRR34Q9NV39 138 aa10.54□□□□□ -0.72
NUP88-207ENST00000573584 TRBV10-3A0A0K0K1G6 114 aa10.54□□□□□ -0.72
NUP88-207ENST00000573584 SPART-AS1P0CW21 52 aa10.54□□□□□ -0.72
NUP88-207ENST00000573584 MIFP14174 115 aa10.54□□□□□ -0.72
NUP88-207ENST00000573584 Q6ZQY7 126 aa10.54□□□□□ -0.72
NUP88-207ENST00000573584 LOC110117498A0A087WWA1 95 aa10.54□□□□□ -0.72
NUP88-207ENST00000573584 TMEM258P61165 79 aa10.53□□□□□ -0.72
NUP88-207ENST00000573584 XAGE1AQ9HD64 81 aa10.52□□□□□ -0.72
NUP88-207ENST00000573584 UNC79Q9P2D8 2635 aa10.52□□□□□ -0.73
NUP88-207ENST00000573584 RPS28P62857 69 aaKnown RBP10.52□□□□□ -0.73
NUP88-207ENST00000573584 DSCR8Q96T75 97 aa10.52□□□□□ -0.73
NUP88-207ENST00000573584 M0R2N4 97 aa10.51□□□□□ -0.73
NUP88-207ENST00000573584 C6orf48Q9UBA6 75 aa10.51□□□□□ -0.73
NUP88-207ENST00000573584 GVQW2A0A096LPI5 108 aaPredicted RBP10.51□□□□□ -0.73
NUP88-207ENST00000573584 DIRC1Q969H9 104 aa10.49□□□□□ -0.73
NUP88-207ENST00000573584 FAM19A5Q7Z5A7 132 aaPredicted RBP10.49□□□□□ -0.73
NUP88-207ENST00000573584 HAMPP81172 84 aa10.48□□□□□ -0.73
NUP88-207ENST00000573584 DPH3Q96FX2 82 aa10.48□□□□□ -0.73
NUP88-207ENST00000573584 FASNP49327 2511 aaKnown RBP10.48□□□□□ -0.73
NUP88-207ENST00000573584 TENM1Q9UKZ4 2725 aa10.48□□□□□ -0.73
NUP88-207ENST00000573584 LINC01547P58512 204 aaPredicted RBP10.47□□□□□ -0.73
NUP88-207ENST00000573584 H3BQ85 93 aa10.47□□□□□ -0.73
NUP88-207ENST00000573584 Q6ZVQ6 151 aa10.47□□□□□ -0.73
NUP88-207ENST00000573584 ZNF73O43830 326 aaPredicted RBP10.47□□□□□ -0.73
NUP88-207ENST00000573584 PDE6GP18545 87 aa10.47□□□□□ -0.73
NUP88-207ENST00000573584 HELZ2Q9BYK8 2649 aaKnown RBP10.45□□□□□ -0.74
NUP88-207ENST00000573584 COX7BP24311 80 aa10.45□□□□□ -0.74
NUP88-207ENST00000573584 HIGD2BQ4VC39 106 aa10.44□□□□□ -0.74
NUP88-207ENST00000573584 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.44□□□□□ -0.74
NUP88-207ENST00000573584 C20orf197Q8N268 126 aa10.44□□□□□ -0.74
NUP88-207ENST00000573584 CAMK2N2Q96S95 79 aa10.43□□□□□ -0.74
NUP88-207ENST00000573584 ELOF1P60002 83 aaKnown RBP10.42□□□□□ -0.74
NUP88-207ENST00000573584 NOTCH2Q04721 2471 aa10.42□□□□□ -0.74
NUP88-207ENST00000573584 J3QKU1 62 aa10.41□□□□□ -0.74
NUP88-207ENST00000573584 TRRAPQ9Y4A5 3859 aa10.41□□□□□ -0.74
NUP88-207ENST00000573584 HIVEP1P15822 2718 aa10.41□□□□□ -0.74
NUP88-207ENST00000573584 WFDC10BQ8IUB3 73 aa10.41□□□□□ -0.74
NUP88-207ENST00000573584 INAFM1C9JVW0 142 aa10.4□□□□□ -0.74
NUP88-207ENST00000573584 VPREB1P12018 145 aa10.4□□□□□ -0.74
NUP88-207ENST00000573584 TRBV7-4A0A0J9YYF1 115 aa10.4□□□□□ -0.74
NUP88-207ENST00000573584 CXCL6P80162 114 aa10.4□□□□□ -0.75
NUP88-207ENST00000573584 TRBV7-6A0A0J9YX20 115 aa10.39□□□□□ -0.75
NUP88-207ENST00000573584 BCE1O60756 84 aa10.39□□□□□ -0.75
NUP88-207ENST00000573584 TRAV7A0A075B6U4 112 aa10.39□□□□□ -0.75
NUP88-207ENST00000573584 NDUFC2-KCTD14E9PQ53 114 aa10.39□□□□□ -0.75
NUP88-207ENST00000573584 TRAV10A0A0B4J240 114 aa10.38□□□□□ -0.75
NUP88-207ENST00000573584 EGFEM1PQ0D2K5 195 aa10.38□□□□□ -0.75
NUP88-207ENST00000573584 M0R378 163 aa10.38□□□□□ -0.75
NUP88-207ENST00000573584 OXTP01178 125 aa10.38□□□□□ -0.75
NUP88-207ENST00000573584 Q6ZRU5 148 aa10.38□□□□□ -0.75
NUP88-207ENST00000573584 ATRQ13535 2644 aa10.38□□□□□ -0.75
NUP88-207ENST00000573584 KPRPQ5T749 579 aaPredicted RBP10.37□□□□□ -0.75
NUP88-207ENST00000573584 OTOGQ6ZRI0 2925 aa10.37□□□□□ -0.75
NUP88-207ENST00000573584 KRTAP26-1Q6PEX3 210 aa10.37□□□□□ -0.75
NUP88-207ENST00000573584 SCXQ7RTU7 201 aa10.35□□□□□ -0.75
NUP88-207ENST00000573584 C15orf56Q8N910 161 aa10.34□□□□□ -0.75
NUP88-207ENST00000573584 LINC00528Q8N1L1 170 aa10.34□□□□□ -0.75
NUP88-207ENST00000573584 NSD1Q96L73 2696 aaPredicted RBP10.34□□□□□ -0.75
NUP88-207ENST00000573584 TEP1Q99973 2627 aaKnown RBP10.33□□□□□ -0.76
NUP88-207ENST00000573584 H3BNG1 76 aa10.32□□□□□ -0.76
NUP88-207ENST00000573584 RETNQ9HD89 108 aa10.32□□□□□ -0.76
NUP88-207ENST00000573584 HECTD1Q9ULT8 2610 aa10.32□□□□□ -0.76
NUP88-207ENST00000573584 H7BZZ5 65 aa10.31□□□□□ -0.76
NUP88-207ENST00000573584 Q6ZRP5 223 aa10.31□□□□□ -0.76
NUP88-207ENST00000573584 FAM236DA0A1B0GTK5 79 aa10.31□□□□□ -0.76
NUP88-207ENST00000573584 FAM236CP0DP71 79 aa10.31□□□□□ -0.76
NUP88-207ENST00000573584 Q6ZTC4 211 aa10.31□□□□□ -0.76
NUP88-207ENST00000573584 WIPF1O43516 503 aa10.3□□□□□ -0.76
NUP88-207ENST00000573584 C1orf43Q9BWL3 253 aa10.3□□□□□ -0.76
NUP88-207ENST00000573584 KLKP1Q107X0 134 aa10.3□□□□□ -0.76
NUP88-207ENST00000573584 ESRGQ1W209 222 aa10.3□□□□□ -0.76
NUP88-207ENST00000573584 C5orf47Q569G3 176 aa10.3□□□□□ -0.76
NUP88-207ENST00000573584 SNURFQ9Y675 71 aa10.3□□□□□ -0.76
NUP88-207ENST00000573584 PKD1L1Q8TDX9 2849 aa10.3□□□□□ -0.76
NUP88-207ENST00000573584 IGKV2D-24A0A075B6R9 120 aa10.28□□□□□ -0.76
NUP88-207ENST00000573584 TM2D3Q9BRN9 247 aa10.27□□□□□ -0.76
NUP88-207ENST00000573584 RMI2Q96E14 147 aa10.27□□□□□ -0.77
NUP88-207ENST00000573584 SYCNQ0VAF6 134 aa10.26□□□□□ -0.77
NUP88-207ENST00000573584 OXLD1Q5BKU9 147 aa10.25□□□□□ -0.77
NUP88-207ENST00000573584 C4orf26Q17RF5 130 aa10.25□□□□□ -0.77
NUP88-207ENST00000573584 Q5XG85 94 aa10.24□□□□□ -0.77
NUP88-207ENST00000573584 NKAPP1Q8N9T2 125 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms