RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 RPL24P83731 157 aaKnown RBP10.71□□□□□ -0.69
NUP88-203ENST00000572019 H3BRM9 83 aa10.7□□□□□ -0.7
NUP88-203ENST00000572019 C4orf48Q5BLP8 95 aa10.69□□□□□ -0.7
NUP88-203ENST00000572019 SEC61BP60468 96 aaKnown RBP10.68□□□□□ -0.7
NUP88-203ENST00000572019 KRTAP19-2Q3LHN2 52 aa10.68□□□□□ -0.7
NUP88-203ENST00000572019 A0A096LNJ9 63 aa10.66□□□□□ -0.7
NUP88-203ENST00000572019 COX17Q14061 63 aa10.66□□□□□ -0.7
NUP88-203ENST00000572019 A0A0U1RRA0 63 aa10.64□□□□□ -0.71
NUP88-203ENST00000572019 NDUFA6P56556 154 aa10.64□□□□□ -0.71
NUP88-203ENST00000572019 SMCR5Q8TEV8 140 aa10.64□□□□□ -0.71
NUP88-203ENST00000572019 SPINK1P00995 79 aa10.63□□□□□ -0.71
NUP88-203ENST00000572019 Q8N377 158 aa10.63□□□□□ -0.71
NUP88-203ENST00000572019 C11orf86A6NJI1 115 aa10.62□□□□□ -0.71
NUP88-203ENST00000572019 KRTAP4-16G5E9R7 235 aaPredicted RBP10.62□□□□□ -0.71
NUP88-203ENST00000572019 ZNF706Q9Y5V0 76 aaPredicted RBP10.62□□□□□ -0.71
NUP88-203ENST00000572019 LINC01549A6NIU2 74 aa10.61□□□□□ -0.71
NUP88-203ENST00000572019 SPRR1AP35321 89 aa10.61□□□□□ -0.71
NUP88-203ENST00000572019 FA2HQ7L5A8 372 aa10.61□□□□□ -0.71
NUP88-203ENST00000572019 URB1-AS1Q96HZ7 61 aa10.61□□□□□ -0.71
NUP88-203ENST00000572019 LINC00158P58513 81 aa10.6□□□□□ -0.71
NUP88-203ENST00000572019 MT1HP80294 61 aa10.6□□□□□ -0.71
NUP88-203ENST00000572019 LINC00483Q53H64 154 aa10.6□□□□□ -0.71
NUP88-203ENST00000572019 XP32Q5T750 250 aa10.6□□□□□ -0.71
NUP88-203ENST00000572019 NCR3O14931 201 aa10.59□□□□□ -0.71
NUP88-203ENST00000572019 MOBPQ13875 183 aa10.59□□□□□ -0.71
NUP88-203ENST00000572019 PRYO14603 147 aa10.58□□□□□ -0.72
NUP88-203ENST00000572019 ERC2-IT1O76042 136 aa10.58□□□□□ -0.72
NUP88-203ENST00000572019 PMCHL1Q16048 86 aa10.58□□□□□ -0.72
NUP88-203ENST00000572019 GAGE2AQ6NT46 116 aa10.58□□□□□ -0.72
NUP88-203ENST00000572019 SMCO4Q9NRQ5 59 aa10.58□□□□□ -0.72
NUP88-203ENST00000572019 IGLV9-49A0A0B4J1Y8 123 aa10.57□□□□□ -0.72
NUP88-203ENST00000572019 TMEM170BQ5T4T1 132 aa10.56□□□□□ -0.72
NUP88-203ENST00000572019 KCNQ1DNQ9H478 68 aa10.56□□□□□ -0.72
NUP88-203ENST00000572019 TRAV9-1A0A075B6T8 112 aa10.55□□□□□ -0.72
NUP88-203ENST00000572019 SMIM13P0DJ93 91 aa10.54□□□□□ -0.72
NUP88-203ENST00000572019 BOD1L2Q8IYS8 172 aa10.54□□□□□ -0.72
NUP88-203ENST00000572019 TRBV10-3A0A0K0K1G6 114 aa10.53□□□□□ -0.72
NUP88-203ENST00000572019 BAGE3Q86Y29 109 aa10.53□□□□□ -0.72
NUP88-203ENST00000572019 ETDCA0A1B0GVM5 59 aa10.52□□□□□ -0.73
NUP88-203ENST00000572019 FABP9Q0Z7S8 132 aa10.52□□□□□ -0.73
NUP88-203ENST00000572019 RPS29P62273 56 aaKnown RBP10.51□□□□□ -0.73
NUP88-203ENST00000572019 NDUFA12Q9UI09 145 aa10.51□□□□□ -0.73
NUP88-203ENST00000572019 B5MCH6 92 aa10.5□□□□□ -0.73
NUP88-203ENST00000572019 SFTA2Q6UW10 78 aa10.5□□□□□ -0.73
NUP88-203ENST00000572019 MIR7-3HGQ8N6C7 128 aa10.5□□□□□ -0.73
NUP88-203ENST00000572019 Q9BRP9 147 aa10.5□□□□□ -0.73
NUP88-203ENST00000572019 TMEM223A0PJW6 202 aa10.49□□□□□ -0.73
NUP88-203ENST00000572019 SLC25A20O43772 301 aa10.49□□□□□ -0.73
NUP88-203ENST00000572019 HBDP02042 147 aa10.49□□□□□ -0.73
NUP88-203ENST00000572019 LORP23490 312 aaPredicted RBP10.49□□□□□ -0.73
NUP88-203ENST00000572019 C18orf32Q8TCD1 76 aa10.49□□□□□ -0.73
NUP88-203ENST00000572019 SSBP3-AS1Q7Z2R9 100 aa10.48□□□□□ -0.73
NUP88-203ENST00000572019 FAM19A2Q8N3H0 131 aa10.48□□□□□ -0.73
NUP88-203ENST00000572019 PCOTHQ58A44 107 aa10.47□□□□□ -0.73
NUP88-203ENST00000572019 LINC00614P0C842 121 aa10.46□□□□□ -0.73
NUP88-203ENST00000572019 TMEM218A2RU14 115 aa10.45□□□□□ -0.74
NUP88-203ENST00000572019 S100PP25815 95 aa10.45□□□□□ -0.74
NUP88-203ENST00000572019 KRTAP10-6P60371 365 aaPredicted RBP10.45□□□□□ -0.74
NUP88-203ENST00000572019 IFITM2Q01629 132 aa10.45□□□□□ -0.74
NUP88-203ENST00000572019 CHTOPQ9Y3Y2 248 aaKnown RBP10.45□□□□□ -0.74
NUP88-203ENST00000572019 MEIG1Q5JSS6 88 aa10.44□□□□□ -0.74
NUP88-203ENST00000572019 CLLU1Q5K131 121 aa10.44□□□□□ -0.74
NUP88-203ENST00000572019 IGLV8-61A0A075B6I0 122 aa10.43□□□□□ -0.74
NUP88-203ENST00000572019 ATP6V1G1O75348 118 aa10.42□□□□□ -0.74
NUP88-203ENST00000572019 COX19Q49B96 90 aa10.41□□□□□ -0.74
NUP88-203ENST00000572019 SEC11CQ9BY50 192 aa10.41□□□□□ -0.74
NUP88-203ENST00000572019 CFC1BP0CG36 223 aa10.4□□□□□ -0.74
NUP88-203ENST00000572019 C9orf153Q5TBE3 101 aa10.4□□□□□ -0.74
NUP88-203ENST00000572019 Q6ZRX8 168 aa10.4□□□□□ -0.74
NUP88-203ENST00000572019 C9orf92A6NGG3 77 aa10.39□□□□□ -0.75
NUP88-203ENST00000572019 ST20-AS1Q8NBB2 130 aa10.39□□□□□ -0.75
NUP88-203ENST00000572019 DDTP30046 118 aa10.38□□□□□ -0.75
NUP88-203ENST00000572019 TSPEAR-AS2P59090 65 aa10.37□□□□□ -0.75
NUP88-203ENST00000572019 TRAPPC1Q9Y5R8 145 aa10.37□□□□□ -0.75
NUP88-203ENST00000572019 UQCC3Q6UW78 93 aa10.36□□□□□ -0.75
NUP88-203ENST00000572019 HERV-K104P63124 156 aa10.35□□□□□ -0.75
NUP88-203ENST00000572019 TRAV12-1A0A0B4J245 112 aa10.34□□□□□ -0.75
NUP88-203ENST00000572019 IFI27L1Q96BM0 104 aa10.34□□□□□ -0.75
NUP88-203ENST00000572019 RPS10P5Q9NQ39 176 aa10.34□□□□□ -0.75
NUP88-203ENST00000572019 FLGP20930 4061 aaPredicted RBP10.33□□□□□ -0.76
NUP88-203ENST00000572019 LOC107984156A0A0G2JMH3 177 aa10.33□□□□□ -0.76
NUP88-203ENST00000572019 HRCT1Q6UXD1 115 aa10.33□□□□□ -0.76
NUP88-203ENST00000572019 ARL17AQ8IVW1 177 aa10.33□□□□□ -0.76
NUP88-203ENST00000572019 TRBV10-2A0A0K0K1G8 114 aa10.31□□□□□ -0.76
NUP88-203ENST00000572019 EIF4EBP3O60516 100 aaPredicted RBP10.31□□□□□ -0.76
NUP88-203ENST00000572019 IGLV6-57P01721 117 aa10.31□□□□□ -0.76
NUP88-203ENST00000572019 S100A12P80511 92 aa10.3□□□□□ -0.76
NUP88-203ENST00000572019 MYMXA0A1B0GTQ4 84 aa10.29□□□□□ -0.76
NUP88-203ENST00000572019 C10orf91Q5T1B1 145 aa10.28□□□□□ -0.76
NUP88-203ENST00000572019 MAP1LC3CQ9BXW4 147 aa10.28□□□□□ -0.76
NUP88-203ENST00000572019 SPANXB1Q9NS25 103 aaPredicted RBP10.28□□□□□ -0.76
NUP88-203ENST00000572019 SOSTDC1Q6X4U4 206 aa10.27□□□□□ -0.77
NUP88-203ENST00000572019 TRAV23DV6A0A075B6W5 121 aa10.26□□□□□ -0.77
NUP88-203ENST00000572019 LINC00587B1AMM8 73 aa10.26□□□□□ -0.77
NUP88-203ENST00000572019 RHEBQ15382 184 aa10.26□□□□□ -0.77
NUP88-203ENST00000572019 M0R2T5 61 aa10.25□□□□□ -0.77
NUP88-203ENST00000572019 S100A7L2Q5SY68 101 aa10.25□□□□□ -0.77
NUP88-203ENST00000572019 ZNF73O43830 326 aaPredicted RBP10.24□□□□□ -0.77
NUP88-203ENST00000572019 COMMD7Q86VX2 200 aa10.24□□□□□ -0.77
NUP88-203ENST00000572019 H0Y8G0 127 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms