RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 SPAG11AQ6PDA7 123 aa6.78□□□□□ -1.32
CAPN3-220ENST00000569827 FP248Q71RG6 208 aaPredicted RBP6.78□□□□□ -1.32
CAPN3-220ENST00000569827 LINC01546A6NGU7 62 aa6.77□□□□□ -1.33
CAPN3-220ENST00000569827 FA2HQ7L5A8 372 aa6.77□□□□□ -1.33
CAPN3-220ENST00000569827 SMCO4Q9NRQ5 59 aa6.77□□□□□ -1.33
CAPN3-220ENST00000569827 CRCT1Q9UGL9 99 aa6.77□□□□□ -1.33
CAPN3-220ENST00000569827 A0A096LNJ9 63 aa6.76□□□□□ -1.33
CAPN3-220ENST00000569827 C11orf86A6NJI1 115 aa6.76□□□□□ -1.33
CAPN3-220ENST00000569827 NCR3O14931 201 aa6.76□□□□□ -1.33
CAPN3-220ENST00000569827 PMCHL1Q16048 86 aa6.76□□□□□ -1.33
CAPN3-220ENST00000569827 GNB1LQ9BYB4 327 aa6.76□□□□□ -1.33
CAPN3-220ENST00000569827 LINC00158P58513 81 aa6.75□□□□□ -1.33
CAPN3-220ENST00000569827 CTAG1AP78358 180 aa6.75□□□□□ -1.33
CAPN3-220ENST00000569827 SMCR5Q8TEV8 140 aa6.74□□□□□ -1.33
CAPN3-220ENST00000569827 COX17Q14061 63 aa6.73□□□□□ -1.33
CAPN3-220ENST00000569827 TMEM170BQ5T4T1 132 aa6.73□□□□□ -1.33
CAPN3-220ENST00000569827 URB1-AS1Q96HZ7 61 aa6.73□□□□□ -1.33
CAPN3-220ENST00000569827 ZNF706Q9Y5V0 76 aaPredicted RBP6.73□□□□□ -1.33
CAPN3-220ENST00000569827 IGLV9-49A0A0B4J1Y8 123 aa6.72□□□□□ -1.33
CAPN3-220ENST00000569827 LINC01549A6NIU2 74 aa6.72□□□□□ -1.33
CAPN3-220ENST00000569827 SEC61BP60468 96 aaKnown RBP6.72□□□□□ -1.33
CAPN3-220ENST00000569827 FABP9Q0Z7S8 132 aa6.72□□□□□ -1.33
CAPN3-220ENST00000569827 MOBPQ13875 183 aa6.72□□□□□ -1.33
CAPN3-220ENST00000569827 GAGE2AQ6NT46 116 aa6.72□□□□□ -1.33
CAPN3-220ENST00000569827 PRYO14603 147 aa6.71□□□□□ -1.34
CAPN3-220ENST00000569827 SMIM13P0DJ93 91 aa6.71□□□□□ -1.34
CAPN3-220ENST00000569827 LCE2CQ5TA81 110 aa6.71□□□□□ -1.34
CAPN3-220ENST00000569827 BAGE3Q86Y29 109 aa6.71□□□□□ -1.34
CAPN3-220ENST00000569827 BOD1L2Q8IYS8 172 aa6.71□□□□□ -1.34
CAPN3-220ENST00000569827 TRAV9-1A0A075B6T8 112 aa6.7□□□□□ -1.34
CAPN3-220ENST00000569827 ERC2-IT1O76042 136 aa6.7□□□□□ -1.34
CAPN3-220ENST00000569827 SPINK1P00995 79 aa6.7□□□□□ -1.34
CAPN3-220ENST00000569827 Q8N377 158 aa6.7□□□□□ -1.34
CAPN3-220ENST00000569827 TRBV10-3A0A0K0K1G6 114 aa6.69□□□□□ -1.34
CAPN3-220ENST00000569827 ETDCA0A1B0GVM5 59 aa6.69□□□□□ -1.34
CAPN3-220ENST00000569827 KRTAP4-16G5E9R7 235 aaPredicted RBP6.69□□□□□ -1.34
CAPN3-220ENST00000569827 HBDP02042 147 aa6.68□□□□□ -1.34
CAPN3-220ENST00000569827 S100PP25815 95 aa6.68□□□□□ -1.34
CAPN3-220ENST00000569827 SPRR1AP35321 89 aa6.68□□□□□ -1.34
CAPN3-220ENST00000569827 XP32Q5T750 250 aa6.68□□□□□ -1.34
CAPN3-220ENST00000569827 MIR7-3HGQ8N6C7 128 aa6.68□□□□□ -1.34
CAPN3-220ENST00000569827 C18orf32Q8TCD1 76 aa6.68□□□□□ -1.34
CAPN3-220ENST00000569827 KRTAP19-2Q3LHN2 52 aa6.67□□□□□ -1.34
CAPN3-220ENST00000569827 LINC00483Q53H64 154 aa6.67□□□□□ -1.34
CAPN3-220ENST00000569827 MEIG1Q5JSS6 88 aa6.67□□□□□ -1.34
CAPN3-220ENST00000569827 KCNQ1DNQ9H478 68 aa6.67□□□□□ -1.34
CAPN3-220ENST00000569827 TMEM218A2RU14 115 aa6.66□□□□□ -1.34
CAPN3-220ENST00000569827 NDUFA12Q9UI09 145 aa6.66□□□□□ -1.34
CAPN3-220ENST00000569827 CHTOPQ9Y3Y2 248 aaKnown RBP6.66□□□□□ -1.34
CAPN3-220ENST00000569827 TMEM223A0PJW6 202 aa6.65□□□□□ -1.34
CAPN3-220ENST00000569827 B5MCH6 92 aa6.65□□□□□ -1.34
CAPN3-220ENST00000569827 ATP6V1G1O75348 118 aa6.65□□□□□ -1.34
CAPN3-220ENST00000569827 LINC00614P0C842 121 aa6.65□□□□□ -1.34
CAPN3-220ENST00000569827 MT1HP80294 61 aa6.65□□□□□ -1.34
CAPN3-220ENST00000569827 Q9BRP9 147 aa6.65□□□□□ -1.34
CAPN3-220ENST00000569827 SFTA2Q6UW10 78 aa6.64□□□□□ -1.35
CAPN3-220ENST00000569827 CLLU1Q5K131 121 aa6.63□□□□□ -1.35
CAPN3-220ENST00000569827 C9orf153Q5TBE3 101 aa6.63□□□□□ -1.35
CAPN3-220ENST00000569827 SEC11CQ9BY50 192 aa6.63□□□□□ -1.35
CAPN3-220ENST00000569827 SLC25A20O43772 301 aa6.62□□□□□ -1.35
CAPN3-220ENST00000569827 COX19Q49B96 90 aa6.62□□□□□ -1.35
CAPN3-220ENST00000569827 PCOTHQ58A44 107 aa6.62□□□□□ -1.35
CAPN3-220ENST00000569827 FAM19A2Q8N3H0 131 aa6.62□□□□□ -1.35
CAPN3-220ENST00000569827 TRAPPC1Q9Y5R8 145 aa6.62□□□□□ -1.35
CAPN3-220ENST00000569827 C9orf92A6NGG3 77 aa6.61□□□□□ -1.35
CAPN3-220ENST00000569827 RPS10P5Q9NQ39 176 aa6.61□□□□□ -1.35
CAPN3-220ENST00000569827 DDTP30046 118 aa6.6□□□□□ -1.35
CAPN3-220ENST00000569827 TSPEAR-AS2P59090 65 aa6.6□□□□□ -1.35
CAPN3-220ENST00000569827 RPS29P62273 56 aaKnown RBP6.6□□□□□ -1.35
CAPN3-220ENST00000569827 SSBP3-AS1Q7Z2R9 100 aa6.6□□□□□ -1.35
CAPN3-220ENST00000569827 FLGP20930 4061 aaPredicted RBP6.59□□□□□ -1.35
CAPN3-220ENST00000569827 IGLV8-61A0A075B6I0 122 aa6.59□□□□□ -1.35
CAPN3-220ENST00000569827 UQCC3Q6UW78 93 aa6.59□□□□□ -1.35
CAPN3-220ENST00000569827 HRCT1Q6UXD1 115 aa6.59□□□□□ -1.35
CAPN3-220ENST00000569827 Q6ZRX8 168 aa6.59□□□□□ -1.35
CAPN3-220ENST00000569827 ST20-AS1Q8NBB2 130 aa6.59□□□□□ -1.35
CAPN3-220ENST00000569827 H0Y8G0 127 aa6.58□□□□□ -1.36
CAPN3-220ENST00000569827 IFI27L1Q96BM0 104 aa6.58□□□□□ -1.36
CAPN3-220ENST00000569827 COMMD7Q86VX2 200 aa6.57□□□□□ -1.36
CAPN3-220ENST00000569827 TRAV12-1A0A0B4J245 112 aa6.56□□□□□ -1.36
CAPN3-220ENST00000569827 NPC2P61916 151 aa6.56□□□□□ -1.36
CAPN3-220ENST00000569827 HERV-K104P63124 156 aa6.56□□□□□ -1.36
CAPN3-220ENST00000569827 IFITM2Q01629 132 aa6.56□□□□□ -1.36
CAPN3-220ENST00000569827 MYMXA0A1B0GTQ4 84 aa6.55□□□□□ -1.36
CAPN3-220ENST00000569827 LORP23490 312 aaPredicted RBP6.55□□□□□ -1.36
CAPN3-220ENST00000569827 KRTAP10-6P60371 365 aaPredicted RBP6.55□□□□□ -1.36
CAPN3-220ENST00000569827 S100A12P80511 92 aa6.55□□□□□ -1.36
CAPN3-220ENST00000569827 EIF4EBP3O60516 100 aaPredicted RBP6.54□□□□□ -1.36
CAPN3-220ENST00000569827 RHEBQ15382 184 aa6.54□□□□□ -1.36
CAPN3-220ENST00000569827 MAP1LC3CQ9BXW4 147 aa6.54□□□□□ -1.36
CAPN3-220ENST00000569827 TRAV23DV6A0A075B6W5 121 aa6.53□□□□□ -1.36
CAPN3-220ENST00000569827 S100A7L2Q5SY68 101 aa6.53□□□□□ -1.36
CAPN3-220ENST00000569827 TRBV10-2A0A0K0K1G8 114 aa6.52□□□□□ -1.37
CAPN3-220ENST00000569827 C10orf91Q5T1B1 145 aa6.52□□□□□ -1.37
CAPN3-220ENST00000569827 SOSTDC1Q6X4U4 206 aa6.52□□□□□ -1.37
CAPN3-220ENST00000569827 SPANXB1Q9NS25 103 aaPredicted RBP6.52□□□□□ -1.37
CAPN3-220ENST00000569827 IGLV6-57P01721 117 aa6.51□□□□□ -1.37
CAPN3-220ENST00000569827 CFC1BP0CG36 223 aa6.51□□□□□ -1.37
CAPN3-220ENST00000569827 LOC107984156A0A0G2JMH3 177 aa6.5□□□□□ -1.37
CAPN3-220ENST00000569827 LINC00587B1AMM8 73 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms