RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	LINC00242	Q5T6M2	205 aa		6.7	□□□□□ -1.34
CLK3-222	ENST00000568232	LINC00337	Q8N6G1	96 aa		6.7	□□□□□ -1.34
CLK3-222	ENST00000568232	ST20	Q9HBF5	79 aa		6.7	□□□□□ -1.34
CLK3-222	ENST00000568232	UBE2D4	Q9Y2X8	147 aa		6.7	□□□□□ -1.34
CLK3-222	ENST00000568232	LINC01546	A6NGU7	62 aa		6.69	□□□□□ -1.34
CLK3-222	ENST00000568232		F8WDY8	70 aa		6.69	□□□□□ -1.34
CLK3-222	ENST00000568232	RPL28	P46779	137 aa	Known RBP	6.69	□□□□□ -1.34
CLK3-222	ENST00000568232	MT1H	P80294	61 aa		6.69	□□□□□ -1.34
CLK3-222	ENST00000568232		Q6ZUT4	128 aa		6.69	□□□□□ -1.34
CLK3-222	ENST00000568232	AMN1	Q8IY45	258 aa		6.69	□□□□□ -1.34
CLK3-222	ENST00000568232	FAM19A2	Q8N3H0	131 aa		6.69	□□□□□ -1.34
CLK3-222	ENST00000568232	C22orf24	Q9Y442	160 aa		6.69	□□□□□ -1.34
CLK3-222	ENST00000568232	SMKR1	H3BMG3	65 aa		6.68	□□□□□ -1.34
CLK3-222	ENST00000568232	POLR2K	P53803	58 aa	Known RBP	6.68	□□□□□ -1.34
CLK3-222	ENST00000568232	C20orf78	Q9BR46	151 aa		6.68	□□□□□ -1.34
CLK3-222	ENST00000568232	MIEN1	Q9BRT3	115 aa		6.68	□□□□□ -1.34
CLK3-222	ENST00000568232	IGHV3OR16-9	A0A0B4J2B5	98 aa		6.67	□□□□□ -1.34
CLK3-222	ENST00000568232	SYS1-DBNDD2	H3BUS1	97 aa		6.67	□□□□□ -1.34
CLK3-222	ENST00000568232	BCE1	O60756	84 aa		6.67	□□□□□ -1.34
CLK3-222	ENST00000568232	HBD	P02042	147 aa		6.67	□□□□□ -1.34
CLK3-222	ENST00000568232	KRTAP13-3	Q3SY46	172 aa		6.67	□□□□□ -1.34
CLK3-222	ENST00000568232	C2orf82	Q6UX34	121 aa		6.67	□□□□□ -1.34
CLK3-222	ENST00000568232	URB1-AS1	Q96HZ7	61 aa		6.67	□□□□□ -1.34
CLK3-222	ENST00000568232	C2orf88	Q9BSF0	95 aa		6.67	□□□□□ -1.34
CLK3-222	ENST00000568232	CSDC2	Q9Y534	153 aa	Known RBP	6.67	□□□□□ -1.34
CLK3-222	ENST00000568232	TRBV27	A0A0K0K1C4	114 aa		6.66	□□□□□ -1.34
CLK3-222	ENST00000568232	NDUFC2-KCTD14	E9PQ53	114 aa		6.66	□□□□□ -1.34
CLK3-222	ENST00000568232	TCAP	O15273	167 aa		6.66	□□□□□ -1.34
CLK3-222	ENST00000568232	TNFRSF6B	O95407	300 aa		6.66	□□□□□ -1.34
CLK3-222	ENST00000568232	IFI27	P40305	119 aa	Predicted RBP	6.66	□□□□□ -1.34
CLK3-222	ENST00000568232	KIAA0087	Q14695	138 aa		6.66	□□□□□ -1.34
CLK3-222	ENST00000568232	KRTAP19-2	Q3LHN2	52 aa		6.66	□□□□□ -1.34
CLK3-222	ENST00000568232		Q8N8P6	123 aa		6.66	□□□□□ -1.34
CLK3-222	ENST00000568232	UQCR10	Q9UDW1	63 aa		6.66	□□□□□ -1.34
CLK3-222	ENST00000568232		A0A1B0GV90	55 aa		6.65	□□□□□ -1.34
CLK3-222	ENST00000568232	ATP5L	O75964	103 aa		6.65	□□□□□ -1.34
CLK3-222	ENST00000568232	FCER1G	P30273	86 aa		6.65	□□□□□ -1.34
CLK3-222	ENST00000568232	SEC61B	P60468	96 aa	Known RBP	6.65	□□□□□ -1.34
CLK3-222	ENST00000568232	RPL32	P62910	135 aa	Known RBP	6.65	□□□□□ -1.34
CLK3-222	ENST00000568232	ORMDL2	Q53FV1	153 aa		6.65	□□□□□ -1.34
CLK3-222	ENST00000568232	NRAC	Q8N912	160 aa		6.65	□□□□□ -1.34
CLK3-222	ENST00000568232	PRO1933	Q9H354	126 aa		6.65	□□□□□ -1.34
CLK3-222	ENST00000568232	IGKV2D-26	A0A0A0MRZ7	120 aa		6.64	□□□□□ -1.35
CLK3-222	ENST00000568232	NPY	P01303	97 aa		6.64	□□□□□ -1.35
CLK3-222	ENST00000568232	CFC1B	P0CG36	223 aa		6.64	□□□□□ -1.35
CLK3-222	ENST00000568232	KRTAP10-6	P60371	365 aa	Predicted RBP	6.64	□□□□□ -1.35
CLK3-222	ENST00000568232	FAM229B	Q4G0N7	80 aa		6.64	□□□□□ -1.35
CLK3-222	ENST00000568232	SPATA45	Q537H7	98 aa		6.64	□□□□□ -1.35
CLK3-222	ENST00000568232	FAM104A	Q969W3	186 aa		6.64	□□□□□ -1.35
CLK3-222	ENST00000568232	PMCHL2	Q9BQD1	86 aa		6.64	□□□□□ -1.35
CLK3-222	ENST00000568232	PAM16	Q9Y3D7	125 aa		6.64	□□□□□ -1.35
CLK3-222	ENST00000568232	TRBV30	A0A0K0K1B3	111 aa		6.63	□□□□□ -1.35
CLK3-222	ENST00000568232	LOC389332	A0A1B0GUA5	103 aa		6.63	□□□□□ -1.35
CLK3-222	ENST00000568232		M0R143	59 aa		6.63	□□□□□ -1.35
CLK3-222	ENST00000568232	LINC01545	Q5VT33	79 aa		6.63	□□□□□ -1.35
CLK3-222	ENST00000568232	XAGE1A	Q9HD64	81 aa		6.63	□□□□□ -1.35
CLK3-222	ENST00000568232	RPL37AP8	A6NKH3	93 aa		6.62	□□□□□ -1.35
CLK3-222	ENST00000568232	SUMO2	P61956	95 aa	Known RBP	6.62	□□□□□ -1.35
CLK3-222	ENST00000568232	IFI27L1	Q96BM0	104 aa		6.62	□□□□□ -1.35
CLK3-222	ENST00000568232	C14orf144	Q96I85	54 aa		6.62	□□□□□ -1.35
CLK3-222	ENST00000568232		H0Y8G0	127 aa		6.61	□□□□□ -1.35
CLK3-222	ENST00000568232	VCY	O14598	125 aa		6.61	□□□□□ -1.35
CLK3-222	ENST00000568232	IGLC3	P0DOY3	106 aa		6.61	□□□□□ -1.35
CLK3-222	ENST00000568232	SMAGP	Q0VAQ4	97 aa		6.61	□□□□□ -1.35
CLK3-222	ENST00000568232	FP248	Q71RG6	208 aa	Predicted RBP	6.61	□□□□□ -1.35
CLK3-222	ENST00000568232	MRPL55	Q7Z7F7	128 aa	Known RBP	6.61	□□□□□ -1.35
CLK3-222	ENST00000568232	SMIM2	Q9BVW6	85 aa		6.61	□□□□□ -1.35
CLK3-222	ENST00000568232	RPL39	P62891	51 aa	Known RBP	6.6	□□□□□ -1.35
CLK3-222	ENST00000568232	KRTAP13-1	Q8IUC0	172 aa		6.6	□□□□□ -1.35
CLK3-222	ENST00000568232	C3orf22	Q8N5N4	141 aa		6.6	□□□□□ -1.35
CLK3-222	ENST00000568232	KIR2DL4	Q99706	377 aa		6.6	□□□□□ -1.35
CLK3-222	ENST00000568232	TIMM21	Q9BVV7	248 aa		6.6	□□□□□ -1.35
CLK3-222	ENST00000568232	LINC00167	Q96N53	147 aa		6.59	□□□□□ -1.35
CLK3-222	ENST00000568232		A0A096LNJ9	63 aa		6.58	□□□□□ -1.36
CLK3-222	ENST00000568232	TMEM238	C9JI98	176 aa		6.58	□□□□□ -1.36
CLK3-222	ENST00000568232	UBE2A	P49459	152 aa		6.58	□□□□□ -1.36
CLK3-222	ENST00000568232	SLC25A34	Q6PIV7	304 aa		6.58	□□□□□ -1.36
CLK3-222	ENST00000568232		Q6ZN92	141 aa		6.58	□□□□□ -1.36
CLK3-222	ENST00000568232	TP73-AS1	Q9UF72	201 aa		6.58	□□□□□ -1.36
CLK3-222	ENST00000568232	TRAV12-1	A0A0B4J245	112 aa		6.57	□□□□□ -1.36
CLK3-222	ENST00000568232	GAGE10	A6NGK3	116 aa		6.57	□□□□□ -1.36
CLK3-222	ENST00000568232	PLN	P26678	52 aa		6.57	□□□□□ -1.36
CLK3-222	ENST00000568232	PAPPA-AS1	Q5QFB9	102 aa		6.57	□□□□□ -1.36
CLK3-222	ENST00000568232	DLEU1	O43261	78 aa		6.56	□□□□□ -1.36
CLK3-222	ENST00000568232	ERAS	Q7Z444	233 aa		6.56	□□□□□ -1.36
CLK3-222	ENST00000568232	TOMM6	Q96B49	74 aa		6.56	□□□□□ -1.36
CLK3-222	ENST00000568232	TMEM141	Q96I45	108 aa		6.56	□□□□□ -1.36
CLK3-222	ENST00000568232	KRTAP3-1	Q9BYR8	98 aa		6.56	□□□□□ -1.36
CLK3-222	ENST00000568232	CYSLTR1	Q9Y271	337 aa		6.56	□□□□□ -1.36
CLK3-222	ENST00000568232	DPM2	O94777	84 aa		6.55	□□□□□ -1.36
CLK3-222	ENST00000568232	NPS	P0C0P6	89 aa		6.55	□□□□□ -1.36
CLK3-222	ENST00000568232	COX8A	P10176	69 aa		6.55	□□□□□ -1.36
CLK3-222	ENST00000568232	COL5A1-AS1	Q5SY13	56 aa		6.55	□□□□□ -1.36
CLK3-222	ENST00000568232	ATOH7	Q8N100	152 aa		6.55	□□□□□ -1.36
CLK3-222	ENST00000568232	SCGB3A1	Q96QR1	104 aa		6.55	□□□□□ -1.36
CLK3-222	ENST00000568232	IGKC	P01834	107 aa		6.54	□□□□□ -1.36
CLK3-222	ENST00000568232	SPAG11A	Q6PDA7	123 aa		6.54	□□□□□ -1.36
CLK3-222	ENST00000568232	SSPO	A2VEC9	5147 aa		6.54	□□□□□ -1.36
CLK3-222	ENST00000568232	PRLH	P81277	87 aa		6.53	□□□□□ -1.36
CLK3-222	ENST00000568232	MRPS36	P82909	103 aa	Known RBP	6.53	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms