RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 PKIGQ9Y2B9 76 aa8.64□□□□□ -1.03
CLK3-218ENST00000566926 RPL24P83731 157 aaKnown RBP8.63□□□□□ -1.03
CLK3-218ENST00000566926 LBHQ53QV2 105 aaPredicted RBP8.63□□□□□ -1.03
CLK3-218ENST00000566926 SDIM1Q6ZPB5 146 aa8.63□□□□□ -1.03
CLK3-218ENST00000566926 CIRBP-AS1Q8TBR5 109 aa8.63□□□□□ -1.03
CLK3-218ENST00000566926 SLPIP03973 132 aa8.62□□□□□ -1.03
CLK3-218ENST00000566926 INAFM2P0DMQ5 153 aa8.62□□□□□ -1.03
CLK3-218ENST00000566926 RNF151Q2KHN1 245 aa8.62□□□□□ -1.03
CLK3-218ENST00000566926 BVES-AS1Q5T3Y7 98 aa8.62□□□□□ -1.03
CLK3-218ENST00000566926 C2orf82Q6UX34 121 aa8.62□□□□□ -1.03
CLK3-218ENST00000566926 LINC00528Q8N1L1 170 aa8.62□□□□□ -1.03
CLK3-218ENST00000566926 A6NDN8 102 aa8.61□□□□□ -1.03
CLK3-218ENST00000566926 LINC00158P58513 81 aa8.61□□□□□ -1.03
CLK3-218ENST00000566926 SYCNQ0VAF6 134 aa8.61□□□□□ -1.03
CLK3-218ENST00000566926 ABCA13Q86UQ4 5058 aa8.6□□□□□ -1.03
CLK3-218ENST00000566926 SMIM13P0DJ93 91 aa8.6□□□□□ -1.03
CLK3-218ENST00000566926 HINT1P49773 126 aaPredicted RBP8.6□□□□□ -1.03
CLK3-218ENST00000566926 UNQ6190/PRO20217Q6UXQ8 127 aa8.6□□□□□ -1.03
CLK3-218ENST00000566926 DPH3Q96FX2 82 aa8.6□□□□□ -1.03
CLK3-218ENST00000566926 ADAMTSL4-AS1Q5T5F5 129 aa8.59□□□□□ -1.03
CLK3-218ENST00000566926 CARD19Q96LW7 228 aa8.59□□□□□ -1.03
CLK3-218ENST00000566926 SNHG12Q9BXW3 62 aa8.59□□□□□ -1.03
CLK3-218ENST00000566926 PFN2P35080 140 aa8.58□□□□□ -1.04
CLK3-218ENST00000566926 COL5A1-AS1Q5SY13 56 aa8.58□□□□□ -1.04
CLK3-218ENST00000566926 MIR7-3HGQ8N6C7 128 aa8.58□□□□□ -1.04
CLK3-218ENST00000566926 C6orf48Q9UBA6 75 aa8.58□□□□□ -1.04
CLK3-218ENST00000566926 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.58□□□□□ -1.04
CLK3-218ENST00000566926 VPS13BQ7Z7G8 4022 aa8.58□□□□□ -1.04
CLK3-218ENST00000566926 LOC107984156A0A0G2JMH3 177 aa8.57□□□□□ -1.04
CLK3-218ENST00000566926 BATFQ16520 125 aa8.57□□□□□ -1.04
CLK3-218ENST00000566926 C10orf25Q5T742 122 aa8.57□□□□□ -1.04
CLK3-218ENST00000566926 Q6ZRU5 148 aa8.57□□□□□ -1.04
CLK3-218ENST00000566926 MUSTN1Q8IVN3 82 aa8.57□□□□□ -1.04
CLK3-218ENST00000566926 ARL17AQ8IVW1 177 aa8.57□□□□□ -1.04
CLK3-218ENST00000566926 LINC00308Q8TCZ7 52 aa8.57□□□□□ -1.04
CLK3-218ENST00000566926 LINC00526Q96FQ7 95 aa8.57□□□□□ -1.04
CLK3-218ENST00000566926 SRRM2Q9UQ35 2752 aaKnown RBP8.56□□□□□ -1.04
CLK3-218ENST00000566926 NDUFC2-KCTD14E9PQ53 114 aa8.56□□□□□ -1.04
CLK3-218ENST00000566926 TLX1NBP0CAT3 122 aa8.56□□□□□ -1.04
CLK3-218ENST00000566926 FXYD2P54710 66 aa8.56□□□□□ -1.04
CLK3-218ENST00000566926 LINC00474Q9P2X8 69 aa8.56□□□□□ -1.04
CLK3-218ENST00000566926 FAT1Q14517 4588 aa8.56□□□□□ -1.04
CLK3-218ENST00000566926 A0A0U1RRA0 63 aa8.55□□□□□ -1.04
CLK3-218ENST00000566926 A0A1B0GWB2 263 aa8.55□□□□□ -1.04
CLK3-218ENST00000566926 SPACA4Q8TDM5 124 aa8.55□□□□□ -1.04
CLK3-218ENST00000566926 A0A0B4J2C4 111 aa8.54□□□□□ -1.04
CLK3-218ENST00000566926 PANO1I0J062 215 aa8.54□□□□□ -1.04
CLK3-218ENST00000566926 DAND5Q8N907 189 aa8.54□□□□□ -1.04
CLK3-218ENST00000566926 FLG2Q5D862 2391 aaPredicted RBP8.54□□□□□ -1.04
CLK3-218ENST00000566926 A0A087WYN8 130 aa8.53□□□□□ -1.04
CLK3-218ENST00000566926 A4D1N5 150 aa8.53□□□□□ -1.04
CLK3-218ENST00000566926 CHTF8P0CG12 524 aa8.53□□□□□ -1.04
CLK3-218ENST00000566926 C9orf116Q5BN46 136 aaPredicted RBP8.53□□□□□ -1.04
CLK3-218ENST00000566926 SND1-IT1Q9HBX3 110 aa8.53□□□□□ -1.04
CLK3-218ENST00000566926 NHP2Q9NX24 153 aaKnown RBP8.53□□□□□ -1.04
CLK3-218ENST00000566926 IGKV2-24A0A0C4DH68 120 aa8.52□□□□□ -1.05
CLK3-218ENST00000566926 NDUFC2O95298 119 aa8.52□□□□□ -1.05
CLK3-218ENST00000566926 RPL37AP61513 92 aaKnown RBP8.52□□□□□ -1.05
CLK3-218ENST00000566926 PLAC8Q9NZF1 115 aa8.52□□□□□ -1.05
CLK3-218ENST00000566926 LOC107984640A0A0U1RRK4 108 aa8.51□□□□□ -1.05
CLK3-218ENST00000566926 RAB37Q96AX2 223 aa8.51□□□□□ -1.05
CLK3-218ENST00000566926 A0A096LNI7 61 aa8.5□□□□□ -1.05
CLK3-218ENST00000566926 NPC2P61916 151 aa8.5□□□□□ -1.05
CLK3-218ENST00000566926 SOSTDC1Q6X4U4 206 aa8.5□□□□□ -1.05
CLK3-218ENST00000566926 C7orf33Q8WU49 177 aa8.5□□□□□ -1.05
CLK3-218ENST00000566926 PRO1854Q9UHT4 67 aa8.49□□□□□ -1.05
CLK3-218ENST00000566926 TRAV13-2A0A0B4J235 113 aa8.48□□□□□ -1.05
CLK3-218ENST00000566926 CFC1BP0CG36 223 aa8.48□□□□□ -1.05
CLK3-218ENST00000566926 CFC1P0CG37 223 aa8.48□□□□□ -1.05
CLK3-218ENST00000566926 KRTAP10-4P60372 401 aaPredicted RBP8.47□□□□□ -1.05
CLK3-218ENST00000566926 RPL18AQ02543 176 aaKnown RBP8.47□□□□□ -1.05
CLK3-218ENST00000566926 GAGE2BQ13066 116 aa8.47□□□□□ -1.05
CLK3-218ENST00000566926 Q6ZRP5 223 aa8.47□□□□□ -1.05
CLK3-218ENST00000566926 TRBV10-2A0A0K0K1G8 114 aa8.46□□□□□ -1.06
CLK3-218ENST00000566926 EIF4EBP3O60516 100 aaPredicted RBP8.46□□□□□ -1.06
CLK3-218ENST00000566926 PLA2G2DQ9UNK4 145 aa8.46□□□□□ -1.06
CLK3-218ENST00000566926 DMBT1Q9UGM3 2413 aaPredicted RBP8.45□□□□□ -1.06
CLK3-218ENST00000566926 K7ERJ3 54 aa8.45□□□□□ -1.06
CLK3-218ENST00000566926 GAGE2EQ4V326 116 aa8.45□□□□□ -1.06
CLK3-218ENST00000566926 GAGE2DQ9UEU5 116 aa8.45□□□□□ -1.06
CLK3-218ENST00000566926 CBY1Q9Y3M2 126 aa8.45□□□□□ -1.06
CLK3-218ENST00000566926 C9orf118A6NHY6 69 aa8.44□□□□□ -1.06
CLK3-218ENST00000566926 TAX1BP3O14907 124 aa8.44□□□□□ -1.06
CLK3-218ENST00000566926 LYRM7Q5U5X0 104 aa8.44□□□□□ -1.06
CLK3-218ENST00000566926 XAGE1AQ9HD64 81 aa8.44□□□□□ -1.06
CLK3-218ENST00000566926 IGKV2-28A0A075B6P5 120 aa8.42□□□□□ -1.06
CLK3-218ENST00000566926 J3QL48 77 aa8.42□□□□□ -1.06
CLK3-218ENST00000566926 IGKV2D-28P01615 120 aa8.42□□□□□ -1.06
CLK3-218ENST00000566926 TMEM126AQ9H061 195 aa8.42□□□□□ -1.06
CLK3-218ENST00000566926 KRTAP29-1A8MX34 341 aaPredicted RBP8.41□□□□□ -1.06
CLK3-218ENST00000566926 RPL13AP40429 203 aaKnown RBP8.41□□□□□ -1.06
CLK3-218ENST00000566926 Q1RN00 199 aa8.41□□□□□ -1.06
CLK3-218ENST00000566926 C9orf129Q5T035 196 aaKnown RBP8.41□□□□□ -1.06
CLK3-218ENST00000566926 IGLV5-37A0A075B6J1 123 aa8.4□□□□□ -1.06
CLK3-218ENST00000566926 OXTP01178 125 aa8.4□□□□□ -1.06
CLK3-218ENST00000566926 VPREB1P12018 145 aa8.4□□□□□ -1.06
CLK3-218ENST00000566926 LINC00337Q8N6G1 96 aa8.4□□□□□ -1.06
CLK3-218ENST00000566926 NKAPP1Q8N9T2 125 aa8.4□□□□□ -1.06
CLK3-218ENST00000566926 M0R378 163 aa8.39□□□□□ -1.07
CLK3-218ENST00000566926 TSPAN13O95857 204 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms